Critical thinking, Creativity, Commitment, Collaboration, Communication
Cardiac biology and heart disease
RNA biology (tRNA, miRNA, mRNA UTRs, and RNA switch)
Translation machinery (ribosome, translation factors, and RNA-binding proteins)
Mitochondrial biology
Translational control in health, disease and medicine
RNA-based therapeutic development
Our current research interests include:
Pathophysiological function and regulatory mechanism of RNA-binding proteins and translation factors in cardiac disorders and in fundamental biology;
The role of translation machinery and translational control in cardiac health and disease and therapeutic applications;
Translational control mechanisms in cytoplasm and mitochondria of mammalian cells.
Methodology and techniques include:
Methods for studying translational control: in vitro translation system using Hela extracts; polysome profiling coupled with RNA-Seq to examine global translational regulation; RiboTag-Seq using HA-tagged RPL22 transgenic mice to determine translatome in specific murine tissues; ribosome profiling (Ribo-Seq) to map ribosome footprints of transcriptome (e.g., mRNA and lncRNA).
Protein-RNA interaction assays, including crosslinking immunoprecipitation (CLIP)-Seq and RNA binding protein immunoprecipitation (RIP)-Seq.
Mouse models of heart failure (HF): Isoproterenol s.c. injection or minipump implantation; Angiotensin II minipump implantation; transverse aortic constriction; left anterior descending artery ligation; ischemia-reperfusion cardiac injury. Phenotypic changes are evaluated by H&E, WGA and trichrome staining. Cardiac functions are assessed by echocardiography.
Construction of CRISPR-Cas9-directed gene-specific knockout mouse models. Isolation of primary cardiac fibroblasts (CFs) and myocytes (CMs) from murine hearts for cell culture.
Biochemistry and molecular biology methods: protein expression and purification, protein interactome capture by mass spectrometry analysis, RNA-protein and RNA-drug interaction (EMSA, SPR, ITC), RNA affinity purification of protein interactome, Selective 2′ Hydroxyl Acylation analyzed by Primer Extension (SHAPE), ChIP, mutagenesis for structure-function study, pulse-chase labeling assay, and mitochondrial functional assays (seahorse, etc.).