The data ahyblackducks.inp are for adult male and female American black ducks banded during 1989-98 (10 years) and recovered over the same 10 years
Run the conversion script blackduck.R with the MARK-formatted data set to convert this data to a RMark processed data object under the Tag Recovery (Seber) parameterization
Run models combining sex , time, and constant parameters for recovery and survival and perform model averaging.
Produce model averaged survival estimates and plot the estimate over time for males and females.
Export the models to the MARK GUI (see script from Tuesday class). Basic steps
Run a series of models in RMark as usual
BEFORE running the cleanup() command do the following
Run the export.MARK command on the processed data file (e.g., bd) and results object ("results" ), for example >export.MARK(bd, project.name="MARKBrownie", model = results, replace = T, chat=1,title = "Brownie", ind.covariates = "all")
While the R session is still open, open the MARK GUI