HyperStack Macros

Concatenate Two HyperStack time-frames (T-wise)

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Description:

This macro concatenates two hyperstacks along the T-dimension (i.e. time frames).

Both hyperstacks must have the same no. of channels, slices and, preferably, the same LUT.

Close all other images before running this macro. Select first hyperstack and run the macro

Limitation:

The macro, currently, does not work with hyperstacks having more than 4 channels.

Running Average on HyperStack time-frames

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Description:

This macro does running average on a Hyperstack time frames.

User needs to define the running average value inside the macro. Default value is set to 6.

Limitations:

1. The macro only runs in FIJI, since it utilizes FIJI's in-built "Re-order Hyperstack..." command. Copy Hyperstack_rearranger to plugins folder in ImageJ, if you want to use the "Running Average" macro in ImageJ.

2. The macro, currently, does not work with hyperstacks having more than 4 channels.

Measure Hyperstack

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Description:

This macro runs "Measure" on a hyperstack in a user-selected (c,t,z) order.

Unchecking "Channels" or "Slices" or "Frames" will select the current channel or the current slice or the current frame, respectively.

The image below shows an example dialog box, which pops up when the macro is run on a Hyperstack (c=4, z=3, t=5)