Software

• Electrographic Seizure Analyzer

  • Software, code, and user manual for offline electrographic seizure analysis can be found in Zeidler et al., 2018 Extended Data 1.

and through github: https://github.com/KM-Lab/Electrographic-Seizure-Analyzer

RRID:SCR_016344

• Spectrum & Coherence Analysis

  • Code for spectral and coherence analysis in Christenson Wick et al, eLIFE, 2019

is available through github at

github: https://github.com/KM-Lab/SpectrumAndCoherence

and https://github.com/eLifeProduction/SpectrumAndCoherence

• MiniPC

  • Code for place cell identification and analysis from miniscope recordings a la Zeidler et al, JNeurosci, 2020

is also available through github: https://github.com/KM-Lab/MiniPC

• Relevant matlab code for flagging seizures which are likely to be large behavioral seizures (see Zeidler et al., 2018 for more information) can be found below:

fdata = fft(data);

fdata(1:floor(20/fs))=0;

fdata(floor(200/fs):end)=0;

envelope_data = abs(ifft(fdata));

[c,d]=butter(2,.1/500,’low’);

smooth_envelope_Data = filtfilt(c,d,envelope_data);

• On-demand Recorder and Analyzer Software and accompanying User Guide

can be found in the supplemental material of Armstrong C, Krook-Magnuson E, Oijala M, Soltesz I.

"Closed-loop optogenetic intervention in mice."

Nature Protocol. 2013 Aug;8(8):1475-93. doi: 10.1038/nprot.2013.080. Epub 2013 Jul 11.

Direct link to supplemental: https://www.nature.com/articles/nprot.2013.080#supplementary-information