英文論文(査読付き)
Submitted manuscripts:
Fujita H, Yoshida S, Suzuki S, Toju H (submitted) Basins of attraction of microbiome structure and soil ecosystem functions. https://doi.org/10.1101/2022.08.23.505048
Noguchi M, Toju H (submitted) Mycorrhizal and endophytic fungi structure contrasting but interdependent assembly processes. https://biorxiv.org/cgi/content/short/2024.02.17.580831v1
Abrego N et al. (submitted) Airborne DNA metabarcoding reveals that fungi follow predictable spatial and seasonal dynamics at the global scale.
Ovaskainen O et al. (submitted) A global, standardized dataset of airborne fungal spores.
In preparation:
Fujita et al., Exploring candidate species driving successional changes in microbiome dynamics.
Hayashi et al., Colonization conditions and microbiome alternative states.
Kageyama et al., Dynamics of soybean-associated biomes in soil ecosystems.
2024
Fujita H, Yoshida S, Suzuki S, Toju H (2024) Soil prokaryotic and fungal biome structures associated with crop disease status across the Japan Archipelago. mSphere [Link]
Toju H, Suzuki SS, Baba YG. (2024) Dynamics of interaction networks and species’ contributions to community-scale flexibility. PNAS Nexus 3:page047 [Link]
Hayashi, Fujita H, Toju H (2024) Deterministic and stochastic processes generating alternative states of microbiomes. ISME Communications 4: ycae007 [Link]
2023
Nakamura N, Toju H, Kitajima K (2023) Leaf, root and rhizosphere microbiomes of an invasive plant, Ardisia crenata, differ between its native and exotic ranges. Frontiers in Microbiology 14:1302167 [Link]
Fujita H, Ushio M, Suzuki K, Abe MS, Yamamichi Y, Yusuke Okazaki, Canarini A, Hayashi I, Fukushima K, Fukuda S, Kiers ET, Toju H (2023) Metagenomic analysis of ecological niche overlap and community collapse in microbiome dynamics. Frontiers in Microbiology 14:1261137 [Link]
Suzuki SS, Baba YG, Toju H (2023) Dynamics of species-rich predator–prey networks and seasonal alternations of core species. Nature Ecology & Evolution 7:1432-1443 [Link] [Online-only full text]
Fujita H, Ushio M, Suzuki K, Abe MS, Yamamichi Y, Yusuke Okazaki, Canarini A, Hayashi I, Fukushima K, Fukuda S, Kiers ET, Toju H (2023) Facilitative interaction networks in experimental microbial community dynamics. Frontiers in Microbiology 14:1153952. [Link]
Fujita H, Ushio M, Suzuki K, Abe MS, Yamamichi Y, Iwayama K, Canarini A, Hayashi I, Fukushima K, Fukuda S, Kiers ET, Toju H (2023) Alternative stable states, nonlinear behavior, and predictability of microbiome dynamics. Microbiome 11:63. [Link]
Yajima D, Fujita H, Hayashi I, Shima G, Suzuki K, Toju H (2023) Core species and interactions prominent in fish-associated microbiome dynamics. Microbiome. 11:53. [Link]
2022
Kageyama T, Toju H (2022) Effects of source sample amount on biodiversity surveys of bacteria, fungi, and nematodes in soil ecosystems. Frontiers in Ecology and Evolution 10:959945. https://doi.org/10.3389/fevo.2022.959945
2021
Hori, Y., Fujita, H., Himura, K., Narisawa, K. and Toju, H. (2021), Synergistic and Offset Effects of Fungal Species Combinations on Plant Performance. Frontiers in Microbiology 12:713180. https://doi.org/10.3389/fmicb.2021.713180
Kadowaki K, Yamamoto S, Sato H, Tanabe AS, Toju H (2021) Aboveground herbivores drive stronger plant species-specific feedback than belowground fungi to regulate tree community assembly. Oecologia 195:773-784 [Link]
2020
Suetsugu K, Taketomi S, Tanabe AS, Haraguchi T, Tayasu I, Toju H (2020) Isotopic and molecular data support mixotrophy in Ophioglossum at the sporophytic stage. New Phytologist 228:415-419 [Link]
2019
Sato H, Toju H (2019) Timing of evolutionary innovation: scenarios of evolutionary diversification in a species-rich fungal clade, Boletales. New Phytologist 222: 1670–1672. [Link] [PDF]
2018
Hiruma K, Kobae Y, Toju H (2018) Beneficial associations between Brassicaceae plants and fungal endophytes under nutrient-limiting conditions: evolutionary origins and host–symbiont molecular mechanisms. Current Opinion in Plant Biology 44:145-154. [Link]
Amma S, Toju H, Wachrinrat C, Sato H, Tanabe AS, Artchawakom T, Kanzaki M (2018) Composition and diversity of soil fungi in Dipterocarpaceae-dominated seasonal tropical forests in Thailand. Microbes and Environments 33:135-143.
Toju H, Vannette RL, Gauthier MPL, Dhami MK, Fukami T (2018) Priority effects can persist across floral generations in nectar microbial metacommunities. Oikos 127:345-352 [Link]
2017
Peay KG, von Sperber C, Cardarelli E, Toju H, Francis CA, Chadwick OA, Vitousek PM (2017) Convergence and contrast in the community structure of Bacteria, Fungi and Archaea along a tropical elevation-climate gradient. FEMS Microbiology Ecology 93:fix045. [Link]
Toju H, Yamamichi M, Guimarães PR Jr, Olesen JM, Mougi A, Yoshida T, Thompson JN (2017) Species-rich networks and eco-evolutionary synthesis at the metacommunity level. Nature Ecology & Evolution 1:0024. [Link]
Kouduka M, Tanabe AS, Yamamoto S, Yanagawa K, Nakamura Y, Akiba F, Tomaru H, Toju H, Suzuki Y. (2017) Eukaryotic diversity in late Pleistocene marine sediments around a shallow methane hydrate deposit in the Japan Sea. Geobiology 15: 715-727.
Sato H, Tanabe AS, Toju H. (2017) Host shifts enhance diversification of ectomycorrhizal fungi: diversification rate analysis of the ectomycorrhizal fungal genera Strobilomyces and Afroboletus with a 80-gene phylogeny. New Phytologist 214: 443-454. [Link].
2016
Toju H, Tanabe AS, Ishii HS (2016) Ericaceous plant–fungus network in a harsh alpine–subalpine environment. Molecular Ecology 25:3242–3257. [Link]
Toju H, Yamamoto S, Tanabe AS, Hayakawa T, Ishii HS (2016) Network modules and hubs in plant–root fungal biomes. Journal of the Royal Society Interface 13:20151097. [Link] [Archived.PDF]
Izuno A, Tanabe AS, Toju H, Yamasaki M, Indrioko S, Isagi Y (2016) Structure of phyllosphere fungal communities in a tropical dipterocarp plantation: a massively parallel next-generation sequencing analysis. Mycoscience 57:171-180. [Link]
2015
Sato H, Tanabe AS, Toju H. (2015) Contrasting diversity and host association of ectomycorrhizal basidiomycetes versus root-associated ascomycetes in a dipterocarp rainforest. PLOS ONE 10:e0125550. [Link]
Toju H (2015) High-throughput DNA barcoding for ecological network studies. Population Ecology 57:37-51. [Invited review in Special Feature] [Link] [Archived.PDF]
2014
Toju H, Guimarães PR Jr, Olesen JM, and Thompson JN (2014) Assembly of complex plant–fungus networks. Nature Communications 5:5273. [Link] [PDF]
Hata H, Tanabe AS, Yamamoto S, Toju H, Kohda M and Hori M (2014) Diet disparity among sympatric herbivorous cichlids in the same ecomorphs in Lake Tanganyika: amplicon pyrosequences on algal farms and stomach contents. BMC Biology 12:90. [Link] [PDF]
Yamamoto S, Sato H, Tanabe AS, Hidaka A, Kadowaki, K, and Toju H. (2014) Spatial segregation and aggregation of ectomycorrhizal and root-endophytic fungi in the seedlings of two Quercus species. PLoS ONE 9:e96363. [Link] [PDF]
Toju H, Sato H, and Tanabe AS. (2014) Diversity and spatial structure of belowground plant–fungal symbiosis in a mixed subtropical forest of ectomycorrhizal and arbuscular mycorrhizal plants. PLoS ONE 9: e86566. [Link] [PDF]
Kadowaki K, Sato H, Yamamoto S, Tanabe AS, Hidaka A and Toju H. (2014) Detection of the horizontal spatial structure of soil fungal communities in a natural forest. Population Ecology 56:301-310. [Link] [PDF]
2013
Toju H, Yamamoto S, Sato H, and Tanabe AS. (2013) Sharing of diverse mycorrhizal and root-endophytic fungi among plant species in an oak-dominated cool–temperate forest. PLoS ONE 8: e78248. [Link] [PDF]
Tanabe AS and Toju H. (2013) Two new computational methods for universal DNA barcoding: A benchmark using barcode sequences of bacteria, archaea, animals, fungi, and land plants. PLoS ONE 8: e76910. [Link] [PDF]
Toju H, Sato H, Yamamoto S, Kadowaki K, Tanabe AS, Yazawa S, Nishimura O, and Agata K. (2013) How are plant and fungal communities linked to each other in below-ground ecosystems? A massively-parallel pyrosequencing analysis of the association specificity of root-associated fungi and their host plants. Ecology and Evolution 3: 3112-3124. [Link] [PDF].
Toju H, Yamamoto S, Sato H, Tanabe AS, Gilbert GS, and Kadowaki K. (2013) Community composition of root-associated fungi in a Quercus-dominated temperate forest: “co-dominance” of mycorrhizal and root-endophytic fungi. Ecology and Evolution 3: 1281-1293. [Link][PDF]
Toju H,Tanabe AS, Notsu Y, Sota T, and Fukatsu T. (2013) Diversification of endosymbiosis: replacements, co-speciation and promiscuity of bacteriocyte symbionts in weevils. The ISME Journal 7: 1378-1390. [Link]
2012
Toju H, Tanabe AS,Yamamoto S, and Sato H. High-coverage ITS primers for the DNA-based identification of ascomycetes and basidiomycetes in environmental samples. (2012) PLoS ONE 7: e40863. [Link] [PDF]
2011
Iseki N, Sasaki A, and Toju H. (2011) Arms race between weevil rostrum length and camellia pericarp thickness: Geographical cline and theory. Journal of Theoretical Biology 285: 1-9. [Link]
Toju H, Ueno S, Taniguchi F, and Sota T. (2011) Metapopulation structure of a seed-predatory weevil and its host plant in arms race coevolution. Evolution 65: 1707-1722. [Link]
Toju H, Abe H, Ueno S, Miyazawa Y, Taniguchi F, Sota T, and Yahara T. (2011) Climatic gradients of arms race coevolution. The American Naturalist 177: 562-573. [Link]
Toju H. (2011) Weevils and camellias in a Darwin’s race: model system for the study of eco-evolutionary interactions between species. Ecological Research 26: 239-251. [Miyadi Award Review] [Link].
Toju H and Fukatsu T. (2011) Diversity and infection prevalence of endosymbionts in natural populations of the chestnut weevil: relevance of local climate and host plants. Molecular Ecology 20: 853-868. [Link]
2010
Toju H, Hosokawa T, Koga R, Nikoh, N, Meng X-Y, Kimura N, and Fukatsu T. (2010) “Candidatus Curculioniphilus buchneri”, a novel clade of bacterial endocellular symbionts from weevils of the genus Curculio. Applied and Environmental Microbiology 76: 275-282. [Link].
2009
Toju H (2009) Natural selection drives the fine-scale divergence of a coevolutionary arms race involving a long-mouthed weevil and its obligate host plant. BMC Evolutionary Biology 9: 273. [PDF]
Toju H and Sota T. (2009) Do arms races punctuate evolutionary stasis? Unified insights from phylogeny, phylogeography and microevolutionary processes. Molecular Ecology 18: 3940-3954. [Link]
2008
Toju H (2008) Fine-scale local adaptation of weevil mouthpart length and camellia pericarp thickness: altitudinal gradient of a putative arms race. Evolution 62: 1086–1102. [Link]
2007
Toju H (2007) Interpopulation variation in predator foraging behaviour promotes the evolutionary divergence of prey. Journal of Evolutionary Biology 20: 1544-1553. [Link]
2006
Toju H and Sota T. (2006) Phylogeography and the geographic cline in the armament of a seed-predatory weevil: effects of historical events vs.natural selection from the host plant. Molecular Ecology 15: 4161-4173. [Link]
Toju H and Sota T. (2006) Adaptive divergence of scaling relationships mediates the arms race between a weevil and its host plant. Biology Letters 2: 539-542. [PDF]
Toju H and Sota T. (2006) Imbalance of predator and prey armament: geographic clines in phenotypic interface and natural selection. The American Naturalist 167: 105-117. [Link]
日本語雑誌
東樹宏和・曽田貞滋. (2006) ツバキとゾウムシの軍拡競走:自然選択の地理的勾配と適応的分化. 日本生態学会誌 56:46-52.
佐々木顕・東樹宏和・井磧直行. (2007) ヤブツバキとシギゾウムシの軍拡競走. 日本生態学会誌 57:174-182.
東樹宏和 (2008) ツバキとゾウムシの進化のレース. 自然保護. 503:40-42.
東樹宏和 (2008) 「象の鼻」をもつ虫はどうして進化したの? ~ゾウムシとツバキの進化のレース~. 理科の探検 RikaTan. 2:18-21.
東樹宏和 (2011) ツバキシギゾウムシ. 昆虫と自然 46:16-19.
東樹宏和 (2011)「共進化する世界」でつながる生命. 生物科学. 63:2-7.
東樹宏和 (2013)「軍拡競走」で進化するゾウムシの長い口. ミルシル. 6:22-25.
東樹宏和 (2017) 地下の微生物叢と農地生態系. アグリバイオ. 1(10):9-12.
東樹宏和 (2017) 微生物が織りなす複雑ネットワーク. 日本微生物生態学会誌. 32:51-57.
東樹宏和 (2017) ネットワーク理論をもとに共生微生物叢を制御する. 植物の生長調節 52:70-77.
東樹宏和 (2018) 植物共生微生物の利用に向けた分野融合型研究戦略. 作物研究. 63:39-41
東樹宏和 (2021) 細菌学とマイクロバイオーム研究 生物種間の関係性ネットワークと微生物叢設計. 日本細菌学雑誌 76(1) 47-47.
神井 弘之, 橋本 禅, 加藤 亮, 吉川 夏樹, 大澤 剛士, 杉原 創, 東樹宏和 (2021) 生態系サービス概念による農業・農村政策のリフレーミング —小特集 政策のグリーン化に向けた農業農村整備の新たな展開. 農業土木学会誌. 89(11) 827-832.
加藤 亮, 國井大輔, 橋本禅, 吉川夏樹, 東樹宏和, 大澤 剛士, 杉原 創, 神井 弘之 (2022) 生態系サービス評価に向けた環境データ集積と統合化に関する研究. 農業農村工学会誌. 90(9):695-700.
著書
東樹宏和. (2008) ツバキとゾウムシの共進化: 厚い果皮と長い口吻の軍拡競走. In 種生物学会編 「共進化の生態学」. 文一総合出版社. [招待執筆]
東樹宏和・曽田貞滋. (2009) 共進化の地理的モザイクと生物群集. In 大串隆之・近藤倫生・吉田丈人編「シリーズ群集生態学2 進化生物学からせまる」. 京都大学学術出版会. [招待執筆]
東樹宏和. (2012) 「共進化」,「植物と昆虫の共進化」. In 巌佐 庸・遠藤一佳・大島泰郎・河田雅圭・倉谷 滋・斎藤成也・塚谷裕一・長谷川眞理子・疋田 努・深津武馬・三中信宏・矢原徹一 編.「進化のすべて(日本進化学会創立10周年記念出版物)」 共立出版. [招待執筆]
酒井聡樹・高田壮則・東樹宏和(2012)「生き物の進化ゲーム ー進化生態学最前線:生物の不思議を解くー 第改訂版」.共立出版.
東樹宏和. (2013) 「軍拡競走」・「適応地形」・「適応放散」.In 上田恵介編. 「行動生物学辞典」. 東京化学同人.
東樹宏和. (2016) 「DNA情報で生態系を読み解く: 環境DNA・網羅的群集調査・生態ネットワーク」. 共立出版.
東樹宏和.(2020) 「ゾウムシの「槍」とツバキの「盾」の共進化」. In 金子修治 , 鈴木紀之, 安田弘法 編「博士の愛した地味な昆虫」. 岩波書店.
東樹宏和.(2020) 「微生物生態系の分析から予測・制御・設計へ」. In 福田真嗣企画 「実験医学 2020年11月号 腸内細菌叢生態学」. 羊土社.