Embedded Files
Getting started in the lab
Getting started in the lab
Guenther Lab Handbook 8_5_20Lab handbook
SCC_usage_notesSCC usage notes
GuentherLab on GitHubLab GitHub
SPLAB Research Project ManagementResearch project management
SPLAB Standardized Project OrganizationProject organization
Relevant articles and videos to get you started with a few techniques we use in the lab, specifically functional MRI, diffusion-wighted imaging (DWI), and electroencephalogram (EEG).
Helpful "how-to..."
Helpful "how-to..."
- Create a database in Excel to keep track of papers you're reading
- Do a PCA analysis
Information about recruiting participants, including lists of potential subjects (coming soon)
Information about how to access Soo-Eun Chang's server at the University of Michigan, 'Mercury' [UNDER CONSTRUCTION]
Information about how to record audio, use Audapter (auditory feedback perturbation software), and process acoustic signals
Information about the Perturbatron (somatosensory feedback perturbation hardware)
MRI safety training manual from MGH.
Image processing streams
Image processing streams
Pipeline developed by Alfonso Nieto-Castañón to process and analyze task-based functional MRI data.
Pipeline currently in development by Jordan Manes and Jason Tourville (previously, Matthias Heyne) to process DWI data.
Open-source software developed by Alfonso Nieto-Castañón for the computation, display, and analysis of resting-state fMRI data (can also be applied to task-based data).
Information about the processing and application of T1 structural image volumes
Cortico-cortical functional and structural connectivity for the entire cerebral cortex.
A common task in the lab is the generation of figures that illustrate effects (e.g., BOLD contrast, connectivity, correlations, etc.) overlaid on an image of the cortical surface or on a series of slices. The lab has some general tools for doing this.
Archive of fMRI Task Paradigm code from completed projects.
Lab presentations
Lab presentations
See here for information about past lab talks and associated slides. A few key presentations are highlighted below.
Presentation_RS01_bgh.pptxRepetition suppression (Alfonso Nieto-Castañón)
Presentation_ICA_HCP.pptxHuman Connectome Project (HCP) independent component analysis (ICA)
Presentation_Eklund_comments_alfnie.pptxCluster analysis (Alfonso Nieto-Castañón)
LGI_explore_JT_upload.pptxLocal gyrification index (LGI; Jason Tourville)
File/data organization notes
File/data organization notes
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