Publications

1: Sadat A, Tiwari S, Sunidhi S, Chaphalkar A, Kochar M, Ali M, Zaidi Z, Sharma A, Verma K, Narayana Rao KB, Tripathi M, Ghosh A, Gautam D, Atul, Ray A, Mapa K, Chakraborty K. Conserved and divergent chaperoning effects of Hsp60/10 chaperonins on protein folding landscapes. Proc Natl Acad Sci U S A. 2022 May 3;119(18):e2118465119. doi: 10.1073/pnas.2118465119. Epub 2022 Apr 29. PMID: 35486698; PMCID: PMC9170145.

2: Verma K, Verma M, Chaphalkar A, Chakraborty K. Recent advances in understanding the role of proteostasis. Fac Rev. 2021 Sep 15;10:72. doi: 10.12703/r/10-72. PMID: 34632458; PMCID: PMC8483240.

3: Sadat A, Tiwari S, Verma K, Ray A, Ali M, Upadhyay V, Singh A, Chaphalkar A, Ghosh A, Chakraborty R, Chakraborty K, Mapa K. GROEL/ES Buffers Entropic Traps in Folding Pathway during Evolution of a Model Substrate. J Mol Biol. 2020 Sep 18;432(20):5649-5664. doi: 10.1016/j.jmb.2020.08.015. Epub 2020 Aug 22. PMID: 32835659.

4: Verma K, Saxena K, Donaka R, Chaphalkar A, Rai MK, Shukla A, Zaidi Z, Dandage R, Shanmugam D, Chakraborty K. Distinct metabolic states of a cell guide alternate fates of mutational buffering through altered proteostasis. Nat Commun. 2020 Jun 10;11(1):2926. doi: 10.1038/s41467-020-16804-6. PMID: 32522991; PMCID: PMC7286901.

5: Ghosh A, Gangadharan A, Verma M, Das S, Matai L, Dash DP, Dash D, Mapa K, Chakraborty K. Cellular responses to proteostasis perturbations reveal non-optimal feedback in chaperone networks. Cell Mol Life Sci. 2019 Apr;76(8):1605-1621. doi: 10.1007/s00018-019-03013-8. Epub 2019 Jan 25. PMID:30683983.

6: Dandage R, Pandey R, Jayaraj G, Rai M, Berger D, Chakraborty K. Differential strengths of molecular determinants guide environment specific mutational fates. PLoS Genet. 2018 May 29;14(5):e1007419. doi: 10.1371/journal.pgen.1007419. PMID: 29813059; PMCID: PMC5993328.

7: Maity S, Rajkumar A, Matai L, Bhat A, Ghosh A, Agam G, Kaur S, Bhatt NR, Mukhopadhyay A, Sengupta S, Chakraborty K. Oxidative Homeostasis Regulates the Response to Reductive Endoplasmic Reticulum Stress through Translation Control. Cell Rep. 2016 Jul 19;16(3):851-65. doi: 10.1016/j.celrep.2016.06.025. Epub 2016 Jun 30. PMID: 27373166.

8: Kaur B , Bhat A , Chakraborty R , Adlakha K , Sengupta S , Roy S , Chakraborty K . Proteomic profile of 4-PBA treated human neuronal cells during ER stress. Mol Omics. 2018 Feb 1;14(1):53-63. doi: 10.1039/c7mo00114b. Epub 2018 Jan 19. PMID: 29570205.

9: Matai L, Sarkar GC, Chamoli M, Malik Y, Kumar SS, Rautela U, Jana NR, Chakraborty K, Mukhopadhyay A. Dietary restriction improves proteostasis and increases life span through endoplasmic reticulum hormesis. Proc Natl Acad Sci U S A. 2019 Aug 27;116(35):17383-17392. doi: 10.1073/pnas.1900055116. Epub 2019 Aug 14. PMID: 31413197; PMCID: PMC6717303.

10: Bhat A, Chakraborty R, Adlakha K, Agam G, Chakraborty K, Sengupta S. Ncl1-mediated metabolic rewiring critical during metabolic stress. Life Sci Alliance. 2019 Aug 15;2(4):e201900360. doi: 10.26508/lsa.201900360. PMID: 31416893; PMCID: PMC6696984.

11: Bose D, Nahar S, Rai MK, Ray A, Chakraborty K, Maiti S. Selective inhibition of miR-21 by phage display screened peptide. Nucleic Acids Res. 2015 Apr 30;43(8):4342-52. doi: 10.1093/nar/gkv185. Epub 2015 Mar 30. PMID: 25824952; PMCID: PMC4417150.

12: Dandage R, Bandyopadhyay A, Jayaraj GG, Saxena K, Dalal V, Das A, Chakraborty K. Classification of chemical chaperones based on their effect on protein folding landscapes. ACS Chem Biol. 2015 Mar 20;10(3):813-20. doi: 10.1021/cb500798y. Epub 2014 Dec 23. PMID: 25493352.

13: Das Roy R, Bhardwaj M, Bhatnagar V, Chakraborty K, Dash D. How do eubacterial organisms manage aggregation-prone proteome? F1000Res. 2014 Jun 27;3:137. doi: 10.12688/f1000research.4307.1. PMID: 25339987; PMCID: PMC4193397.

14: Maity S, Basak T, Bhat A, Bhasin N, Ghosh A, Chakraborty K, Sengupta S. Cross-compartment proteostasis regulation during redox imbalance induced ER stress. Proteomics. 2014 Aug;14(15):1724-36. doi: 10.1002/pmic.201300449. Epub 2014 Jun 17. PMID: 24838640.

15: Makhija L, Krishnan V, Rehman R, Chakraborty S, Maity S, Mabalirajan U, Chakraborty K, Ghosh B, Agrawal A. Chemical chaperones mitigate experimental asthma by attenuating endoplasmic reticulum stress. Am J Respir Cell Mol Biol. 2014 May;50(5):923-31. doi: 10.1165/rcmb.2013-0320OC. PMID: 24299608.

16: Bandyopadhyay A, Saxena K, Kasturia N, Dalal V, Bhatt N, Rajkumar A, Maity S, Sengupta S, Chakraborty K. Chemical chaperones assist intracellular folding to buffer mutational variations. Nat Chem Biol. 2012 Jan 15;8(3):238-45. doi: 10.1038/nchembio.768. PMID: 22246401; PMCID: PMC3527004.

17: Maity S, Ghosh A, Chakraborty K. Integrating an ER Stress Reporter for Monitoring Genome-Wide UPR-ER in Budding Yeast. Methods Mol Biol. 2022;2378:189-201. doi: 10.1007/978-1-0716-1732-8_12. PMID: 34985701.