査読付学術雑誌論文（＊が竹中が責任著者）
2025
・38 Nagahara E, Tsuchihashi A, ..., Matsumoto T, Takenaka M＊ (2025) Impact of climate warming on the foraging behavior of northernmost distributed primates. Scientific Reports 15, 27096.
・37 Laudee P, Malicky H, Takenaka M, Sawangarrom P, Suwannarat N (2025) A New Species of Triaenodes (Trichoptera: Leptoceridae), based on morphological and molecular data, from Kaeng Khoi Waterfall, Chumphon Province, southern Thailand. Zootaxa 5594, 387-394.
2024
36 Takenaka M＊, Hasebe Y, Yano K, Okamoto S, Tojo K, Seki M, Sekiguchi S, Jitsumasa T, Morohashi N, Handa Y, Sakaba T (2024) Environmental DNA metabarcoding on aquatic insects: comparing the primer sets of MtInsects-16S based on the mtDNA 16S and general marker based on the mtDNA COI region. Environmental DNA 6(4), e588.
35 Suzuki H, Takenaka M, Tojo K (2024) Variations in the phenological patterns of a caddisfly inhabiting the same mountain massifs: life history differences in different altitudinal zones. Ecology and Evolution 14(6), e11428.
34 Laudee P, Malicky H, Takenaka M, Suwannarat N, Kong C, Vongswombath C, Tojo K (2024) Three new species of the genera Ceraclea Stephens and Setodes Rambur (Trichoptera: Leptoceridae) from Laos and Cambodia. Zootaxa 5471(1), 134-140.
33 Yoshinari G, Inada K, Takenaka M, Tojo K, Negishi J (2024) Redescription of Utaperla orientalis (Plecoptera, Chroloperlidae) from Hokkaido: The first record of a Utaperla stonefly in Japan. Limnology, accepted: https://doi.org/10.1007/s10201-024-00752-x.
32 Suzuki H, Takenaka M, Tojo K (2024) Phylogeography of an insect inhabiting ‘Sky Islands’: the relationships among genetic structures and geographical characteristics, geohistorical characteristics, and cyclical climate changes. Biological Journal of the Linnean Society 141(4), 503–519.
31 Suzuki H, Takenaka M, Tojo K (2024) Evolutionary history of a cold-adapted limnephilid caddisfly: Effects of climate change and topography on genetic structure. Molecular Phylogenetics and Evolution 191, 107967.
2023
30 Laudee P, Malicky P, Kong C, Takenaka M, Tojo K (2023) New species of the genus Trichosetodes Ulmer, 1915 (Trichoptera: Leptoceridae) from Ratanakiri province, Cambodia, based on morphological and molecular data. Zookeys 1182, 153–164.
29 Takenaka M, Yano K, Tojo K (2023) Phylogeography of the true freshwater crab, Geothelphusa dehaani: detected dual dispersal routes via land and sea. Zoology 160, 126118.
28 Yoshida T, Takenaka M, Tojo K (2023) Molecular phylogeography of Japanese long-toed water beetles, Elmomorphus (Coleoptera: Dryopoidea: Dryopidae): first record of Elmomorphus amamiensis from Okinoerabu-jima Island. Japanese Journal of Entomology 26(3), 165–174.
27 Mikami K, Takenaka M, Nozaki T, Bae YJ, Tojo K (2023) Phylogeography of alpine and subalpine adapted Pseudostenophylax caddisflies (Limnephilidae: Trichoptera): a strong relationship with mountain formation. Biological Journal of the Linnean Society 139(3), 257–274.
26 吉田匠・野田聖・東城幸治・竹中將起＊ (2023) 甑島列島に生息するカゲロウ目昆虫相について. 昆蟲（ニューシリーズ） 26(2), 107–114.
25 Takenaka M, Kogawara H, Bae YJ, Tojo K (2023) Genetic differentiation within species exhibiting widespread gene flow; phylogeography of the downstream inhabiting species Ephemera orientalis (Insecta: Ephemeroptera). Biological Journal of the Linnean Society 138(4), 351–364.
24 Takenaka M＊, Yano K, Suzuki T, Tojo K (2023) Development of novel PCR primer sets for DNA metabarcoding of aquatic insects, and the discovery of some cryptic species. Limnology 24, 121–136.
2022
23 Takenaka M＊, Hayashi K, Yamada G, Ogura T, Ito M, Milner AM, Tojo K (2022) Behavior of snow monkeys hunting fish to survive winter. Scientific Reports 12, 20324.
22 Okamoto S, Takenaka M, Tojo K (2022) Seasonal modifications of longitudinal distribution patterns within a stream: Interspecific interactions in the niche overlap zones of two Ephemera mayflies. Ecology and Evolution 12(4), e8766.
2021
21 Milner AM, Wood SA, Docherty C, Biessy L, Takenaka M, Tojo K (2021) Winter diet of Japanese macaques from Chubu Sangaku National Park, Japan incorporates freshwater biota. Scientific Reports 11, 23091.
20 Takenaka M, Shibata S, Ito T, Shimura N, Tojo K (2021) Phylogeography of the northernmost distributed Anisocentropus caddisflies and their comparative genetic structures based on habitat preferences. Ecology and Evolution 11(9), 4957–4971.
19 Ohnishi O, Takenaka M, Okano R, Yoshitomi H, Tojo K (2021) Wide-scale gene flow, even in Insects that have lost their flight ability: presence of dispersion due to a unique parasitic ecological strategy of piggybacking hosts. Zoological Science 38(2), 122–139.
2020
18 Suzuki T, Hirao AS, Takenaka M, Yano K, Tojo K (2020) Development of microsatellite markers for a giant water bug, Appasus japonicus, distributed in East Asia. Genes & Genetic Systems 95(6), 323–329.
17 Yano K, Takenaka M, Mitamura T, Tojo K (2020) Identifying a “pseudogene” for the mitochondrial DNA COI region of the corixid aquatic insect, Hesperocorixa distanti (Heteroptera, Corixidae). Limnology 21, 319–325.
2019
16 Yano K, Takenaka M, Tojo K (2019) Genealogical Position of Japanese Populations of the Globally Distributed Mayfly Cloeon dipterum and Related Species (Ephemeroptera, Baetidae): A Molecular Phylogeographic Analysis. Zoological Science 36(6), 479–489.
15 Takenaka M, Tokiwa T, Tojo K (2019) Concordance between molecular biogeography of Dipteromimus tipuliformis and geological history in the local fine scale (Ephemeroptera, Dipteromimidae). Molecular Phylogenetics and Evolution 139, 106547.
14 Takenaka M, Sekiné K, Tojo K (2019) The first establishment of “hand-pairing” breeding method for the most ancestral wing acquired Insect group. Zoological Science 36(2), 136–140.
13 Takenaka M, Shibata S, Shimura N, Ito T, Tojo K (2019) Update on Distribution Area Information of Three Species of Anisocentropus Caddisflies Inhabiting the Japanese Islands (Trichoptera: Calamoceratidae). New Entomologist 67, 13–20.
12 Takenaka M, Tojo K (2019) Ancient origin of a dipteromimid mayfly family endemic to the Japanese Islands and its genetic differentiation across tectonic faults. Biological Journal of the Linnean Society 126(3), 555–573.
2017
11 Tojo K, Takenaka M, Togashi S, Sekiné K (2017) A Polymitarcyid Mayfly, Ephoron shigae Recorded in the Chikuma-Shinano River System in Niigata Prefecture, and Its Genetic Structure. New Entomologist 66, 1–7.
10 竹中將起・趙在翼・東城幸治 (2017) 琉球列島・渡嘉敷島におけるタイワンモンカゲロウの初記録 (採集記録). New Entomologist 66, 30–32.
2016
9 東城幸治・竹中將起 (2016) 平成27年9月関東・東北豪雨による鬼怒川・大洪水後のアカツキシロカゲロウ・ミツトゲメシロカゲロウへの影響 (採集記録). New Entomologist 65, 119–121.
8 東城幸治・竹中將起 (2016) 茨城県南部地域でのタガメ観察 (観察記録). New Entomologist 65, 122–123.
2015
7 Tamura M, Takenaka M, Tojo K (2015) New Record of the Caddisfly Genus Anisocentropus (Trichoptera: Calamoceratidae) on Yaku-shima Island. New Entomologist 64, 55–59.
6 竹中將起・東城幸治 (2015) 槍ヶ岳・槍沢最源頭部におけるオンダケトビケラPseudostenophylax ondakensisの記録 （観察記録）. New Entomologist 64, 60–62.
5 竹中將起・小河原寛明・東城幸治 (2015) ガガンボカゲロウ類の分布域について: 日本列島広域を対象とした網羅的解析. New Entomologist 64, 13–18.
4 竹中將起・斎藤梨絵・鈴木智也・大西央士郎・富樫繁春・岸本亨・東城幸治 (2015) 佐渡島におけるノギカワゲラの初記録 （短報）. New Entomologist 64, 19–23.
2014
3 竹中將起・東城幸治 (2014) 源流域棲ガガンボカゲロウ類における特殊な交尾行動の観察記録. New Entomologist 63, 47–52.
2 東城幸治・趙在翼・竹中將起・三上賢司・早川美波 (2014) 南アルプス仙丈岳・聖岳の高山帯でのミネトワダカワゲラの観察記録 （観察記録）. New Entomologist 63, 67–68.
2013
1 Takenaka M, Shibata S, Suzuki T, Tojo K (2013) Distribution Record of Anisocentropus Caddisfly (Trichoptera: Calamoceratidae) in the Tsushima Islands. New Entomologist 62, 45–49.
査読付国際会議論文
2. Takenaka M, Sekiné K, Yano K, Tojo K (2019) Evaluation of the effectiveness of a “hand-pairing” Cross-Breeding Experiment in Ephemeroptera. Zoosymposia 16, 210–217.
1. Takenaka M, Tojo K (2016) A Study into the distribution of the family Dipteromimidae, which is endemic to the Japanese Islands. Biology of Inland Waters 3, 93–97.
著書
5 竹中將起(2025) 総論：流水棲昆虫の魅力 (特 集・魅力あふれる流水棲昆虫). 昆虫と自然 60, 1-2
4 竹中將起・渡邊通人・東城幸治（2024）高山棲タカネヒナバッタの系統進化−幻の富士山の固有亜種フジコバネヒナバッタ−（特集 高山域の昆虫類：多様性と系統・進化）. 昆虫と自然 59, 27-31.
3 竹中將起 (2024) 第4章 流程に沿った河川景観の移りかわりと生物群集の成立. In. 平林公男・東城幸治 (編) 河川生態系の基礎と生物生産, 共立出版, pp. 34–48.
2 竹中將起・千頭康彦 (2021) 昆虫における性的形質の多様性と進化（特集 遺伝子から紐解く, 昆虫の性的形質の多様性）. 昆虫と自然 56, 1–2.
1 Tojo K, Sekiné K, Suzuki T, Saito R, Takenaka M (2017) The species and genetic diversities of insects in Japan, with special reference to the aquatic insects. In. Motokawa and Kajihara (編) Species Diversity of Animals in Japan. Springer, 229–247.
総説論文
1 Tojo K, Sekiné K, Takenaka M, Isaka Y, Komaki S, Suzuki T, Schoville SD (2017) Species diversity of insects in Japan: Their origins and diversification processes. Entomological Science 20(1), 357–381.
その他
昆虫DNA研究会ニュースレター
環境DNA学会ニューレター
日本進化学会ニュース
生物科学
広報むろと
などに執筆