Resource

Research-Related Tools

Datasets/Tools

Genomics: NCBI, Ensembl, UCSC Genome Browser, Genomicus, OmicsDI

Gene expression: GTEx, Tabula Muris, Medaka Omics Data Portal, SalmoBase, Xenbase

Datamonkey

JASPAR, transcription factor.

Biotools, JABAWS

g:profiler, ShinyGO: Gene ontology

iDEP: Runs RNAseq without coding

RCSB PDB, protein information

Papers/Grants

NMBU writitng center channel, Ten simple rules for structuring papers.

Start from scratch or bullet points. Written scratch is much better than a never-starting masterpiece in your mind.

Biorender, Phylopic, ColorHexa

Open Grants, Acronymify


Educational

MIT CompBio

CrisprPEDIA

How to train yourself as a science-minded person

Science brings humans an evidence-based perspective to improve our lives and understand nature better. Scientific research training will bring you insight and a mindset about how to think scientifically. After your graduation, you do not necessarily have to be a scientific researcher. You may become a teacher, a policymaker, or a technician in a private company, or work for wildlife conversation, or a professional administrator to support researchers, or a journalist, or perhaps an artist. However, whatever you will become, sending a science-minded person into human society is one of the greatest missions of the science community to make our society better, I believe. Based on this belief, I hope you seriously engage in your research project and try to learn as much as possible regardless of your future career. You don't have to push yourself too much or compare yourself to somebody else, but please just love your project, be sincere and careful to conduct proper research as well as enjoy learning new skill sets.

Scientific research is a series of setbacks and failures. Commonly, you may not observe expected results, or the planned algorithm does not work for your datasets. In the peer-review process of paper submission or dissertation defense, other researchers criticize your research from various viewpoints to improve and polish your research. What we can do is just to be sincere, be patient, learn a lot, and think in a broad perspective. After completing your research, you will add one page to the long-lasting history of science.


The process of scientific study is as follows:

(1) Learn existing studies, theories and observations

(2) Find an interesting research question

(3) Make a feasible and appropriate research plan to answer the question

(4) Conduct the research

(5) Present the research and discuss with other researchers to improve your research

(6) Organize your research as a thesis/paper

(7) Publish the paper in a peer-reviewed scientific journal

(8) Explain the significance of your finding to general public