Resources

PCR & Sequencing

• SANGER

• 454 Pyrosequencing

• Illumina

BASH scripting

https://ryanstutorials.net/

https://onceupon.github.io/Bash-Oneliner/

http://tille.garrels.be/training/tldp/

Python coding

http://www.practicepython.org/why-practice-python

Python for Bioinformatics - https://youtu.be/uWWoRa8thN0

G,C content program practice - https://youtu.be/Tl_b-qcBXR4

Biology Background

Bacteria - Prokaryotes

Eukaryotes

Class Activities

HHMI Phylogenies

HHMI Microbial Ecology - Winogradsky Column

HHMI Virtual Lab - Identification of Bacteria

BLAST unknown sequence ID activity

QIIME

Introduction to QIIME tutorial

R Data Analysis

http://colisci.univie.ac.at/uploads/media/Basic_analysis_in_R.pdf

https://f1000research.com/articles/5-1492/v2

https://bioconductor.org/packages/devel/bioc/vignettes/microbiome/inst/doc/vignette.html

http://joey711.github.io/phyloseq-demo/phyloseq-demo.html