A central paradox in evolutionary biology is the unexpected dynamics of genomic elements that are typically considered unchangeable. Chromosomal mutations, including fusions and translocations, are often harmful, yet chromosome architecture varies dramatically across species and frequently contributes to the evolution of complex traits and speciation. Similarly, genes essential for survival and reproduction are expected to be highly conserved. However, many of these core genes, especially those involved in reproduction, show signatures of rapid evolution or even lineage-specific turnover.
My research program is based on the hypothesis that this rampant evolution is driven by internal genetic conflicts—a continuous "arms race" between selfish genetic elements, such as meiotic drivers and transposons, and their host genomes.
“The fiercest battles are often fought within.”
In nature, conflicts are easier to spot when they occur between species. These external genetic conflicts have been found to promote the rapid evolution of behaviors and immunity. Yet some of the most profound battles occur silently within the genome. Selfish genetic elements break the rules of inheritance, disrupt development, and reshape genomes inside out. Unlike external conflicts, these internal genetic conflicts are harder to detect but have lasting impacts on gene function and chromosome structures.
In our lab, we explore these hidden genetic conflicts, not only to reveal how host genomes evolve defenses against selfish genetic elements but to understand how these conflicts drive the rapid evolution of essential genes, rewire regulatory networks, and reshape chromosomes. From the silence within, we aim to uncover the selection forces that fuel diversity and innovation in life.
We will integrate genetic, genomic, and cellular methods to reveal how internal genetic conflicts shape some of the most fundamental biological processes and reveal their effects on diseases.
Meiotic Drive and Non-Mendelian Segregation
“What’s fair ain’t necessarily right.” –Toni Morrison
In the elegant symmetry of Mendelian genetics, each allele is promised an equal chance at inheritance. But biology doesn’t always play fair. Meiotic drive subverts this balance, allowing selfish genetic elements to cheat the rules and bias their transmission to the next generation. For example, some drivers kill the gametes that don’t carry them, spreading through populations despite harming fertility. By violating Mendel’s law of equal segregation, they ignite internal genetic conflicts that can reshape genomes, disrupt reproductive systems, and drive evolutionary innovation. In our lab, we study these molecular cheaters—not just to understand how they bend the rules, but to uncover how host genomes fight back and their impact on genome and cellular evolution.
Unexpected Rapid Evolution of Essential Genes
"The wound is the place where the Light enters you." –Rumi
How can genes so vital change so quickly? This paradox lies at the heart of our curiosity. We propose that the answer is rooted in genetic conflict. Many rapidly evolving essential genes aren’t just performing routine cellular tasks—they are engaged in an ongoing battle against selfish genetic elements, such as meiotic drivers and transposons, or even external pathogens like bacteria and viruses. In this evolutionary arms race, rapid change is a survival strategy.
Just as a wound invites healing and transformation, the pressure from these genetic conflicts forces essential genes to adapt and evolve. These adaptations may rewire regulatory networks, reshape chromatin dynamics, or give rise to entirely new genes. In our lab, we aim to uncover the molecular scars and innovations left behind by these conflicts—to understand how they shape genome architecture, influence fertility, and drive the evolution of fundamental biological processes.
Currently, we focus on a group of rapidly evolving essential genes, sperm nuclear proteins (or protamines), which replace histones to pack DNA in sperm nuclei.
Chromosomes that Break the Rules
"Treasure your exceptions." –William Bateson
While most cells in an organism typically share the same set of chromosomes, there are notable exceptions. A familiar example is the sex chromosomes: males typically carry one X and one Y chromosome, while females carry two X chromosomes. Beyond this, some species harbor extra chromosomes known as B chromosomes or possess chromosomes limited to specific tissues or stages of development, such as germline-restricted chromosomes. These chromosomes often defy the expectations of Mendel’s laws, which predict equal segregation and inheritance from both parents. These "genomic outlaws" often evolve selfish behaviors to manipulate cell division and ensure their own transmission.
By investigating these atypical chromosomes and their unusual selfish behaviors, we aim to understand how chromosomes evolve under non-Mendelian inheritance and how organisms preserve genomic integrity while managing such exceptions. This work will not only reveal fundamental principles of chromosome biology but will also shed insight into the origins and therapies of chromosomal abnormalities in cancer cells.
Dr. Sue Hammoud @ University of Michigan, USA
Dr. Kevin HC Wei @ University of British Columbia, Canada
Dr. Ryan Bracewell @ Indiana University of Bloomington, USA
Dr. Mahul Chakraborty @ Taxes A&M University, USA
Many projects in the lab are curiosity-driven and often emerge from unexpected questions. I’m willing to support motivated and independent trainees in pursuing their own ideas and developing projects aligned with their interests.
Interested in joining us? Contact Ching-Ho to discuss further project ideas.
See my talk for the DeLill Nassar Award from the Genetics Society of America:
We would like to thank the following funders for their support