Bizzotto, E., Fraulini, S., Zampieri, G., Orellana, E., Treu, L., Campanaro, S. MICROPHERRET: MICRObial PHEnotypic tRait ClassifieR using Machine lEarning Techniques (2024) Environmental Microbiome, 19 (1), art. no. 58, . Santin, A., Collura, F., Singh, G., Morlino, M.S., Bizzotto, E., Bellan, A., Gupte, A.P., Favaro, L., Campanaro, S., Treu, L., Morosinotto, T. Deciphering the genetic landscape of enhanced poly-3-hydroxybutyrate production in Synechocystis sp. B12 (2024) Biotechnology for Biofuels and Bioproducts, 17 (1), art. no. 101. Satta, A., Ghiotto, G., Santinello, D., Giangeri, G., Bergantino, E., Modesti, M., Raga, R., Treu, L., Campanaro, S.(*cl), Zampieri, G. Synergistic functional activity of a landfill microbial consortium in a microplastic-enriched environment (2024) Science of the Total Environment, 947, art. no. 174696. da Silva Duarte, V., Treu, L., Campanaro, S.(*ca), Fioravante Guerra, A., Giacomini, A., Mas, A., Corich, V., Lemos Junior, W.J.F. Investigating biological mechanisms of colour changes in sustainable food systems: The role of Starmerella bacillaris in white wine colouration using a combination of genomic and biostatistics strategies (2024) Food Research International, 193, art. no. 114862. DOI: 10.1016/j.foodres.2024.114862 Postacchini, P., Grimalt-Alemany, A., Ghofrani-Isfahani, P., Treu, L., Campanaro, S., Menin, L., Patuzzi, F., Baratieri, M., Angelidaki, I. Carbon monoxide inhibition on acidogenic glucose fermentation and aceticlastic methanogenesis (2024) Bioresource Technology, 407, art. no. 131076. DOI: 10.1016/j.biortech.2024.131076 Xirostylidou, A., Gaspari, M., Kontogiannopoulos, K.N., Ghiotto, G., Treu, L., Campanaro, S., Zouboulis, A.I., Kougias, P.G. Biomethanation on demand: Continuous and intermittent hydrogen supply on biological CO2 methanation (2024) Chemical Engineering Journal, 495, art. no. 153677, . DOI: 10.1016/j.cej.2024.153677 Santin, A., Spatola Rossi, T., Morlino, M.S., Gupte, A.P., Favaro, L., Morosinotto, T., Treu, L., Campanaro, S. Autotrophic poly-3-hydroxybutyrate accumulation in Cupriavidus necator for sustainable bioplastic production triggered by nutrient starvation (2024) Bioresource Technology, 406, art. no. 131068, . DOI: 10.1016/j.biortech.2024.131068 Bizzotto, E., Zampieri, G., Treu, L., Filannino, P., Di Cagno, R., Campanaro, S. Classification of bioactive peptides: A systematic benchmark of models and encodings (2024) Computational and Structural Biotechnology Journal, 23, pp. 2442-2452. https://www.scopus.com/inward/record.uri?eid=2-s2.0-85194922187&doi=10.1016%2fj.csbj.2024.05.040&partnerID=40&md5=1e7c2ea0534a9a2acd075baca7de59d9DOI: 10.1016/j.csbj.2024.05.040 Centurion, V.B., Rossi, A., Orellana, E., Ghiotto, G., Kakuk, B., Morlino, M.S., Basile, A., Zampieri, G., Treu, L., Campanaro, S. A unified compendium of prokaryotic and viral genomes from over 300 anaerobic digestion microbiome (2024) Environmental Microbiome, 19 (1), art. no. 1.https://www.scopus.com/inward/record.uri?eid=2-s2.0-85181230262&doi=10.1186%2fs40793-023-00545-2&partnerID=40&md5=a4524c9c6c3f4b64522e3790c89383b1DOI: 10.1186/s40793-023-00545-2 Ghiotto, G., Detman-Ignatowska, A., Chojnacka, A., Orellana, E., de Bernardini, N., Fraulini, S., Treu, L., Sikora, A., Campanaro, S. Decipher syntrophies within C2-C4 organic acids-degrading anaerobic microbiomes: A multi-omic exploration (2024) Chemical Engineering Journal, 489, art. no. 151390, . https://www.scopus.com/inward/record.uri?eid=2-s2.0-85191002335&doi=10.1016%2fj.cej.2024.151390&partnerID=40&md5=d02d259894c43fe6fc8d40ae464d95ecDOI: 10.1016/j.cej.2024.151390 Giangeri, G., Tsapekos, P., Gaspari, M., Ghofrani-Isfahani, P., Treu, L., Kougias, P., Campanaro, S.(*cl-ca), Angelidaki, I. A bioaugmentation strategy to recover methane production under sulfate-stressed conditions: Highlights on targeted sulfate-reducing bacteria and DIET-related species (2024) Applied Energy, 362, art. no. 122940.https://www.scopus.com/inward/record.uri?eid=2-s2.0-85187208638&doi=10.1016%2fj.apenergy.2024.122940&partnerID=40&md5=91ab906a39833ad75ac69e1e96b9460bDOI: 10.1016/j.apenergy.2024.122940 Serna-García, R., Silvia Morlino, M., Bucci, L., Savio, F., Favaro, L., Morosinotto, T., Seco, A., Bouzas, A., Campanaro, S.(*), Treu, L. Biological carbon capture from biogas streams: Insights into Cupriavidus necator autotrophic growth and transcriptional profile (2024) Bioresource Technology, 399, art. no. 130556.https://www.scopus.com/inward/record.uri?eid=2-s2.0-85187231266&doi=10.1016%2fj.biortech.2024.130556&partnerID=40&md5=11497245342ede4cb628b30ff9514522DOI: 10.1016/j.biortech.2024.130556 Agostini, S., Bucci, L., Doni, D., Costantini, P., Gupte, A., Müller, B., Sibilla, F., Basaglia, M., Casella, S., Kougias, P.G., Campanaro, S.(*ca), Favaro, L., Treu, L. Bioaugmentation strategies based on bacterial and methanogenic cultures to relieve stress in anaerobic digestion of protein-rich substrates (2024) Renewable Energy, 225, art. no. 120270.https://www.scopus.com/inward/record.uri?eid=2-s2.0-85187202585&doi=10.1016%2fj.renene.2024.120270&partnerID=40&md5=384d01401877de9807710eba71da2734DOI: 10.1016/j.renene.2024.120270 Ghiotto, G., De Bernardini, N., Giangeri, G., Tsapekos, P., Gaspari, M., Kougias, P.G., Campanaro, S.(*ca), Angelidaki, I., Treu, L. From microbial heterogeneity to evolutionary insights: A strain-resolved metagenomic study of H2S-induced changes in anaerobic biofilms (2024) Chemical Engineering Journal, 485, art. no. 149824. https://www.scopus.com/inward/record.uri?eid=2-s2.0-85185708058&doi=10.1016%2fj.cej.2024.149824&partnerID=40&md5=6896ae95ce6603383a936ab0ac705befDOI: 10.1016/j.cej.2024.149824 Bucci, L., Ghiotto, G., Zampieri, G., Raga, R., Favaro, L., Treu, L., Campanaro, S. Adaptation of Anaerobic Digestion Microbial Communities to High Ammonium Levels: Insights from Strain-Resolved Metagenomics (2024) Environmental Science and Technology, 58 (1), pp. 580-590.https://www.scopus.com/inward/record.uri?eid=2-s2.0-85181046779&doi=10.1021%2facs.est.3c07737&partnerID=40&md5=8b91c4a9f3e385d26ad97598c3767c81DOI: 10.1021/acs.est.3c07737 Gaspari, M., Ghiotto, G., Centurion, V.B., Kotsopoulos, T., Santinello, D., Campanaro, S.(*ca), Treu, L., Kougias, P.G. Decoding Microbial Responses to Ammonia Shock Loads in Biogas Reactors through Metagenomics and Metatranscriptomics (2024) Environmental Science and Technology, 58 (1), pp. 591-602.https://www.scopus.com/inward/record.uri?eid=2-s2.0-85180936053&doi=10.1021%2facs.est.3c07840&partnerID=40&md5=953f43546edba59e7520628735d017cbDOI: 10.1021/acs.est.3c07840 Satta, A., Zampieri, G., Loprete, G., Campanaro, S.(*ca), Treu, L., Bergantino, E. Metabolic and enzymatic engineering strategies for polyethylene terephthalate degradation and valorization (2024) Reviews in Environmental Science and Biotechnology.https://www.scopus.com/inward/record.uri?eid=2-s2.0-85192885817&doi=10.1007%2fs11157-024-09688-1&partnerID=40&md5=f2442d6675d7da1234086581c51922b7DOI: 10.1007/s11157-024-09688-1 Centurion, V.B., Bizzotto, E., Tonini, S., Filannino, P., Di Cagno, R., Zampieri, G., Campanaro, S. FEEDS, the Food wastE biopEptiDe claSsifier: From microbial genomes and substrates to biopeptides function (2024) Current Research in Biotechnology, 7, art. no. 100186. https://www.scopus.com/inward/record.uri?eid=2-s2.0-85184604071&doi=10.1016%2fj.crbiot.2024.100186&partnerID=40&md5=8130e2cdc8b0ef45305efc698fef6ffbDOI: 10.1016/j.crbiot.2024.100186 Ghiotto, G., Zampieri, G., Campanaro, S.(ca*), Treu, L. Strain-resolved metagenomics approaches applied to biogas upgrading (2024) Environmental Research, 240, art. no. 117414.https://www.scopus.com/inward/record.uri?eid=2-s2.0-85175058051&doi=10.1016%2fj.envres.2023.117414&partnerID=40&md5=295b2aa19bd7a634d6ec6d4e76b3fdd8DOI: 10.1016/j.envres.2023.117414
2023
Morlino, M.S., Serna García, R., Savio, F., Zampieri, G., Morosinotto, T., Treu, L., Campanaro, S. Cupriavidus necator as a platform for polyhydroxyalkanoate production: An overview of strains, metabolism, and modeling approaches (2023) Biotechnology Advances, 69, art. no. 108264. https://www.scopus.com/inward/record.uri?eid=2-s2.0-85172917334&doi=10.1016%2fj.biotechadv.2023.108264&partnerID=40&md5=5fecd76bf3f0d2a6bc3701d2ce458768DOI: 10.1016/j.biotechadv.2023.108264 Cripwell, R.A., My, R., Treu, L., Campanaro, S., Favaro, L., van Zyl, W.H., Viljoen-Bloom, M. Additional glucoamylase genes increase ethanol productivity on rice and potato waste streams by a recombinant amylolytic yeast (2023) Bioresource Technology, 388, art. no. 129787. https://www.scopus.com/inward/record.uri?eid=2-s2.0-85172400400&doi=10.1016%2fj.biortech.2023.129787&partnerID=40&md5=8d6c5fa459d031796fe443ab6e8a104eDOI: 10.1016/j.biortech.2023.129787 Giangeri, G., Tsapekos, P., Gaspari, M., Ghofrani-Isfahani, P., Lin, M.K.T.H., Treu, L., Kougias, P., Campanaro, S.(*ca-cl), Angelidaki, I.Magnetite Alters the Metabolic Interaction between Methanogens and Sulfate-Reducing Bacteria(2023) Environmental Science and Technology, 57 (43), pp. 16399-16413. DOI: 10.1021/acs.est.3c05948 Basile, A., Zampieri, G., Kovalovszki, A., Karkaria, B., Treu, L., Patil, K.R., Campanaro, S. Modelling of microbial interactions in anaerobic digestion: from black to glass box (2023) Current opinion in microbiology, 75, p. 102363. https://www.scopus.com/inward/record.uri?eid=2-s2.0-85171600402&doi=10.1016%2fj.mib.2023.102363&partnerID=40&md5=e5f0b04135149f4e4f6a2a0783bdad8dDOI: 10.1016/j.mib.2023.102363 Gaspari, M., Treu, L., Centurion, V.B., Kotsopoulos, T.Α., Campanaro, S.(*cl), Kougias, P.G. Impacts of long chain fatty acids injection on biogas reactors performance stability and microbial community structure and function (2023) Journal of Cleaner Production, 418, art. no. 138048. https://www.scopus.com/inward/record.uri?eid=2-s2.0-85165533160&doi=10.1016%2fj.jclepro.2023.138048&partnerID=40&md5=f84aba633241e89f16f8fad42bae50d2DOI: 10.1016/j.jclepro.2023.138048 Ji, M., Giangeri, G., Yu, F., Sessa, F., Liu, C., Sang, W., Canu, P., Li, F., Treu, L., Campanaro, S. An integrated metagenomic model to uncover the cooperation between microbes and magnetic biochar during microplastics degradation in paddy soil (2023) Journal of Hazardous Materials, 458, art. no. 131950. https://www.scopus.com/inward/record.uri?eid=2-s2.0-85164284223&doi=10.1016%2fj.jhazmat.2023.131950&partnerID=40&md5=3b128dfc73a3ae97df87a1949185373aDOI: 10.1016/j.jhazmat.2023.131950 Agostini, S., Moriconi, F., Zampirolli, M., Padoan, D., Treu, L., Campanaro, S.(*cl), Favaro, L. Monitoring the Microbiomes of Agricultural and Food Waste Treating Biogas Plants over a One-Year Period (2023) Applied Sciences (Switzerland), 13 (17), art. no. 9959, . https://www.scopus.com/inward/record.uri?eid=2-s2.0-85170404968&doi=10.3390%2fapp13179959&partnerID=40&md5=019114e158faaa5ce65eddead48336d6DOI: 10.3390/app13179959 Ji, M., Xiao, L., Usman, M., Liu, C., Sang, W., Treu, L., Campanaro, S., Luo, G., Zhang, Y. Different microplastics in anaerobic paddy soils: Altering methane emissions by influencing organic matter composition and microbial metabolic pathways (2023) Chemical Engineering Journal, 469, art. no. 144003. https://www.scopus.com/inward/record.uri?eid=2-s2.0-85161612675&doi=10.1016%2fj.cej.2023.144003&partnerID=40&md5=521c0f5e1dc5b38a571635f24740dbd7DOI: 10.1016/j.cej.2023.144003 Ji, M., Giangieri, G., Usman, M., Liu, C., Bosaro, M., Sessa, F., Canu, P., Treu, L., Campanaro, S. An integrated Metagenomic-Pangenomic strategy revealed native microbes and magnetic biochar cooperation in plasticizer degradation (2023) Chemical Engineering Journal, 468, art. no. 143589. https://www.scopus.com/inward/record.uri?eid=2-s2.0-85159596346&doi=10.1016%2fj.cej.2023.143589&partnerID=40&md5=9905ff00c480d60d10bc24c99ecf19beDOI: 10.1016/j.cej.2023.143589 Greses, S., De Bernardini, N., Treu, L., Campanaro, S.(*cl), González-Fernández, C. Genome-centric metagenomics revealed the effect of pH on the microbiome involved in short-chain fatty acids and ethanol production (2023) Bioresource Technology, 377, art. no. 128920, . https://www.scopus.com/inward/record.uri?eid=2-s2.0-85151003624&doi=10.1016%2fj.biortech.2023.128920&partnerID=40&md5=97264e9f7ac4edac37558301b6721941DOI: 10.1016/j.biortech.2023.128920 Serna-García, R., Tsapekos, P., Treu, L., Bouzas, A., Seco, A., Campanaro, S., Angelidaki, I. Unraveling prevalence of homoacetogenesis and methanogenesis pathways due to inhibitors addition (2023) Bioresource Technology, 376, art. no. 128922. https://www.scopus.com/inward/record.uri?eid=2-s2.0-85150821807&doi=10.1016%2fj.biortech.2023.128922&partnerID=40&md5=65dedf02d3bc7ac2af03fd38c2087a07DOI: 10.1016/j.biortech.2023.128922 Zampieri, G., Campanaro, S.(*ca), Angione, C., Treu, L. Metatranscriptomics-guided genome-scale metabolic modeling of microbial communities(2023) Cell Reports Methods, 3 (1), art. no. 100383.https://www.scopus.com/inward/record.uri?eid=2-s2.0-85149803867&doi=10.1016%2fj.crmeth.2022.100383&partnerID=40&md5=2d41543260badc97249c7c453fc13fe9DOI: 10.1016/j.crmeth.2022.100383 Basile, A., Heinken, A., Hertel, J., Smarr, L., Li, W., Treu, L., Valle, G., Campanaro, S.(*), Thiele, I. Longitudinal flux balance analyses of a patient with episodic colonic inflammation reveals microbiome metabolic dynamics (2023) Gut Microbes, 15 (1), art. no. 2226921. https://www.scopus.com/inward/record.uri?eid=2-s2.0-85164542714&doi=10.1080%2f19490976.2023.2226921&partnerID=40&md5=c2378461a49ca280a68cf7bd84a311bdDOI: 10.1080/19490976.2023.2226921 Favaro, L., Campanaro, S.(*cl), Fugaban, J.I.I., Treu, L., Jung, E.S., d’Ovidio, L., de Oliveira, D.P., Liong, M.-T., Ivanova, I.V., Todorov, S.D. Genomic, metabolomic, and functional characterisation of beneficial properties of Pediococcus pentosaceus ST58, isolated from human oral cavity (2023) Beneficial Microbes, 14 (1), pp. 57-72. https://www.scopus.com/inward/record.uri?eid=2-s2.0-85150311477&doi=10.3920%2fBM2022.0067&partnerID=40&md5=d931b4df9844aa83017c2c4717e469dbDOI: 10.3920/BM2022.0067
2022
Centurion, V.B., Campanaro, S.(*ca), Basile, A., Treu, L., Oliveira, V.M.Microbiome structure in biofilms from a volcanic island in Maritime Antarctica investigated by genome-centric metagenomics and metatranscriptomics(2022) Microbiological Research, 265, art. no. 127197, . https://www.scopus.com/inward/record.uri?eid=2-s2.0-85138470508&doi=10.1016%2fj.micres.2022.127197&partnerID=40&md5=4afb42138c18391ae3ee5e2acecae0c8DOI: 10.1016/j.micres.2022.127197 Rossi, A., Morlino, M.S., Gaspari, M., Basile, A., Kougias, P., Treu, L., Campanaro, S.Analysis of the anaerobic digestion metagenome under environmental stresses stimulating prophage induction(2022) Microbiome, 10 (1), art. no. 125, . https://www.scopus.com/inward/record.uri?eid=2-s2.0-85135981339&doi=10.1186%2fs40168-022-01316-w&partnerID=40&md5=1da3375c26dfba9ab27d188946c08588DOI: 10.1186/s40168-022-01316-w De Bernardini, N., Basile, A., Zampieri, G., Kovalovszki, A., De Diego Diaz, B., Offer, E., Wongfaed, N., Angelidaki, I., Kougias, P.G., Campanaro, S.(*ca), Treu, L.Integrating metagenomic binning with flux balance analysis to unravel syntrophies in anaerobic CO2 methanation(2022) Microbiome, 10 (1), art. no. 117. https://www.scopus.com/inward/record.uri?eid=2-s2.0-85135221156&doi=10.1186%2fs40168-022-01311-1&partnerID=40&md5=6fbbdf85461fd5eee08d3e58b749afbbDOI: 10.1186/s40168-022-01311-1 Giangeri, G., Morlino, M.S., De Bernardini, N., Ji, M., Bosaro, M., Pirillo, V., Antoniali, P., Molla, G., Raga, R., Treu, L., Campanaro, S.Preliminary investigation of microorganisms potentially involved in microplastics degradation using an integrated metagenomic and biochemical approach(2022) Science of the Total Environment, 843, art. no. 157017, . https://www.scopus.com/inward/record.uri?eid=2-s2.0-85133429107&doi=10.1016%2fj.scitotenv.2022.157017&partnerID=40&md5=1be71ba4d23bf937a162aa32292d6117DOI: 10.1016/j.scitotenv.2022.157017 Ebrahimian, F., De Bernardini, N., Tsapekos, P., Treu, L., Zhu, X., Campanaro, S., Karimi, K., Angelidaki, I.Effect of pressure on biomethanation process and spatial stratification of microbial communities in trickle bed reactors under decreasing gas retention time(2022) Bioresource Technology, 361, art. no. 127701, . https://www.scopus.com/inward/record.uri?eid=2-s2.0-85135303457&doi=10.1016%2fj.biortech.2022.127701&partnerID=40&md5=0a70b5b58b5a720ca556a104dc91fc6eDOI: 10.1016/j.biortech.2022.127701 Tlais, A.Z.A., Junior, W.J.F.L., Filannino, P., Campanaro, S., Gobbetti, M., Cagno, R.D.How Microbiome Composition Correlates with Biochemical Changes during Sauerkraut Fermentation: a Focus on Neglected Bacterial Players and Functionalities(2022) Microbiology Spectrum, 10 (4), . https://www.scopus.com/inward/record.uri?eid=2-s2.0-85137046842&doi=10.1128%2fspectrum.00168-22&partnerID=40&md5=9c0d78085a8550c6c96d3af7fb6959b4DOI: 10.1128/spectrum.00168-22 Palù, M., Peprah, M., Tsapekos, P., Kougias, P., Campanaro, S.(*ca), Angelidaki, I., Treu, L.In-situ biogas upgrading assisted by bioaugmentation with hydrogenotrophic methanogens during mesophilic and thermophilic co-digestion(2022) Bioresource Technology, 348, art. no. 126754, . https://www.scopus.com/inward/record.uri?eid=2-s2.0-85123873475&doi=10.1016%2fj.biortech.2022.126754&partnerID=40&md5=c4e10f211316efd02df992f2196352a8DOI: 10.1016/j.biortech.2022.126754 Ji, M., Wang, X., Usman, M., Liu, F., Dan, Y., Zhou, L., Campanaro, S., Luo, G., Sang, W.Effects of different feedstocks-based biochar on soil remediation: A review(2022) Environmental Pollution, 294, art. no. 118655, . https://www.scopus.com/inward/record.uri?eid=2-s2.0-85120900747&doi=10.1016%2fj.envpol.2021.118655&partnerID=40&md5=b3dee34fcf81a4c11c5a8b42b8d00cf9DOI: 10.1016/j.envpol.2021.118655 Gronchi, N., De Bernardini, N., Cripwell, R.A., Treu, L., Campanaro, S., Basaglia, M., Foulquié-Moreno, M.R., Thevelein, J.M., Van Zyl, W.H., Favaro, L., Casella, S.Natural Saccharomyces cerevisiae Strain Reveals Peculiar Genomic Traits for Starch-to-Bioethanol Production: the Design of an Amylolytic Consolidated Bioprocessing Yeast(2022) Frontiers in Microbiology, 12, art. no. 768562, . https://www.scopus.com/inward/record.uri?eid=2-s2.0-85124218118&doi=10.3389%2ffmicb.2021.768562&partnerID=40&md5=5252ddf33effced9b13569f4b81231eeDOI: 10.3389/fmicb.2021.768562 Palù, M., Basile, A., Zampieri, G., Treu, L., Rossi, A., Morlino, M.S., Campanaro, S.KEMET – A python tool for KEGG Module evaluation and microbial genome annotation expansion(2022) Computational and Structural Biotechnology Journal, 20, pp. 1481-1486. https://www.scopus.com/inward/record.uri?eid=2-s2.0-85127183379&doi=10.1016%2fj.csbj.2022.03.015&partnerID=40&md5=97bb97ad77793093285873c087d05165DOI: 10.1016/j.csbj.2022.03.015
2021
Detman, A., Bucha, M., Treu, L., Chojnacka, A., Pleśniak, Ł., Salamon, A., Łupikasza, E., Gromadka, R., Gawor, J., Gromadka, A., Drzewicki, W., Jakubiak, M., Janiga, M., Matyasik, I., Błaszczyk, M.K., Jędrysek, M.O., Campanaro, S.(*ca), Sikora, A.Evaluation of acidogenesis products’ effect on biogas production performed with metagenomics and isotopic approaches(2021) Biotechnology for Biofuels, 14 (1), art. no. 125DOI: 10.1186/s13068-021-01968-0 Iglesias-Iglesias, R., Portela-Grandío, A., Treu, L., Campanaro, S., Kennes, C., Veiga, M.C.Co-digestion of cheese whey with sewage sludge for caproic acid production: Role of microbiome and polyhydroxyalkanoates potential production(2021) Bioresource Technology, 337, art. no. 125388DOI: 10.1016/j.biortech.2021.125388 Tsapekos, P., Treu, L., Campanaro, S.(*ca), Centurion, V.B., Zhu, X., Peprah, M., Zhang, Z., Kougias, P.G., Angelidaki, I.Pilot-scale biomethanation in a trickle bed reactor: Process performance and microbiome functional reconstruction(2021) Energy Conversion and Management, 244, art. no. 114491DOI: 10.1016/j.enconman.2021.114491 Yan, M., Zhu, X., Treu, L., Ravenni, G., Campanaro, S., Goonesekera, E.M., Ferrigno, R., Jacobsen, C.S., Zervas, A., Angelidaki, I., Fotidis, I.A.Comprehensive evaluation of different strategies to recover methanogenic performance in ammonia-stressed reactors(2021) Bioresource Technology, 336, art. no. 125329DOI: 10.1016/j.biortech.2021.125329 Basile, A., De Pascale, F., Bianca, F., Rossi, A., Frizzarin, M., De Bernardini, N., Bosaro, M., Baldisseri, A., Antoniali, P., Lopreiato, R., Treu, L., Campanaro, S.Large-scale sequencing and comparative analysis of oenological Saccharomyces cerevisiae strains supported by nanopore refinement of key genomes(2021) Food Microbiology, 97, art. no. 103753DOI: 10.1016/j.fm.2021.103753 Gaspari, M., Treu, L., Zhu, X., Palù, M., Angelidaki, I., Campanaro, S.(*ca), Kougias, P.G.Microbial dynamics in biogas digesters treating lipid-rich substrates via genome-centric metagenomics(2021) Science of the Total Environment, 778, art. no. 146296DOI: 10.1016/j.scitotenv.2021.146296 Luo, G., Shi, Z., Campanaro, S.(*cf), Usman, M., Treu, L., Basile, A., Angelidaki, I., Zhang, S.Genome-centric metatranscriptomics analysis reveals the role of hydrochar in anaerobic digestion of waste activated sludge(2021) Environmental Science and Technology, 55 (12), pp. 8351-8361. https://www.scopus.com/inward/record.uri?eid=2-s2.0-85108119853&doi=10.1021%2facs.est.1c01995&partnerID=40&md5=bd1f4e2c7def482101bcd64a915d6708DOI: 10.1021/acs.est.1c01995 Duan, N., Kougias, P.G., Campanaro, S., Treu, L., Angelidaki, I.Evolution of the microbial community structure in biogas reactors inoculated with seeds from different origin(2021) Science of the Total Environment, 773, art. no. 144981DOI: 10.1016/j.scitotenv.2021.144981 Louhasakul, Y., Treu, L., Kougias, P.G., Campanaro, S., Cheirsilp, B., Angelidaki, I.Valorization of palm oil mill wastewater for integrated production of microbial oil and biogas in a biorefinery approach(2021) Journal of Cleaner Production, 296, art. no. 126606DOI: 10.1016/j.jclepro.2021.126606 Erijman, L., Campanaro, S., Etchebehere, C., Varesche, M.B.A.Editorial: Meta-omic Approaches to the Complex Anaerobic Communities in Wastewater Treatment Plants and Digesters(2021) Frontiers in Microbiology, 12, art. no. 664716, . https://www.scopus.com/inward/record.uri?eid=2-s2.0-85106178759&doi=10.3389%2ffmicb.2021.664716&partnerID=40&md5=9e1e451881f5c291b82eec386a3e4890DOI: 10.3389/fmicb.2021.664716 Nikoloudaki, O., Lemos Junior, W.J.F., Campanaro, S., Di Cagno, R., Gobbetti, M.Role prediction of Gram-negative species in the resistome of raw cow's milk(2021) International Journal of Food Microbiology, 340, art. no. 109045 DOI: 10.1016/j.ijfoodmicro.2021.109045 Nikoloudaki, O., Lemos Junior, W.J.F., Borruso, L., Campanaro, S., De Angelis, M., Vogel, R.F., Di Cagno, R., Gobbetti, M.How multiple farming conditions correlate with the composition of the raw cow's milk lactic microbiome(2021) Environmental MicrobiologyDOI: 10.1111/1462-2920.15407 Lemos Junior, W.J.F., Treu, L., Nadai, C., da Silva Duarte, V., Campanaro, S., Fabrega-Prats, M., Giacomini, A., Corich, V.Genomic insights into the glutathione metabolism of the wine yeast Starmerella bacillaris(2021) Oeno One, 55 (1), pp. 105-117. DOI: 10.20870/OENO-ONE.2021.55.1.4374
2020
Yan, M., Treu, L., Campanaro, S.(*ca), Tian, H., Zhu, X., Khoshnevisan, B., Tsapekos, P., Angelidaki, I., Fotidis, I.A.Effect of ammonia on anaerobic digestion of municipal solid waste: Inhibitory performance, bioaugmentation and microbiome functional reconstruction(2020) Chemical Engineering Journal, 401, art. no. 126159DOI: 10.1016/j.cej.2020.126159 da Silva Duarte, V., Treu, L., Sartori, C., Dias, R.S., da Silva Paes, I., Vieira, M.S., Santana, G.R., Marcondes, M.I., Giacomini, A., Corich, V., Campanaro, S.(*ca), da Silva, C.C., de Paula, S.O.Milk microbial composition of Brazilian dairy cows entering the dry period and genomic comparison between Staphylococcus aureus strains susceptible to the bacteriophage vB_SauM-UFV_DC4(2020) Scientific Reports, 10 (1), art. no. 5520, . DOI: 10.1038/s41598-020-62499-6 Campanaro, S., Raga, R., Squartini, A.Intermittent aeration of landfill simulation bioreactors: Effects on emissions and microbial community(2020) Waste Management, 117, pp. 146-156. DOI: 10.1016/j.wasman.2020.08.010 Basile, A., Campanaro, S.(*ca), Kovalovszki, A., Zampieri, G., Rossi, A., Angelidaki, I., Valle, G., Treu, L.Revealing metabolic mechanisms of interaction in the anaerobic digestion microbiome by flux balance analysis(2020) Metabolic Engineering, 62, pp. 138-149. DOI: 10.1016/j.ymben.2020.08.013 Yan, M., Treu, L., Zhu, X., Tian, H., Basile, A., Fotidis, I.A., Campanaro, S.(*cl), Angelidaki, I.Insights into Ammonia Adaptation and Methanogenic Precursor Oxidation by Genome-Centric Analysis(2020) Environmental Science and Technology, 54 (19), pp. 12568-12582. DOI: 10.1021/acs.est.0c01945 Gris, B., Treu, L., Zampieri, R.M., Caldara, F., Romualdi, C., Campanaro, S., La Rocca, N.Microbiota of the therapeutic Euganean thermal muds with a focus on the main cyanobacteria species(2020) Microorganisms, 8 (10), art. no. 1590, pp. 1-23. DOI: 10.3390/microorganisms8101590 Rossi, A., Treu, L., Toppo, S., Zschach, H., Campanaro, S., Dutilh, B.E.Evolutionary study of the crAssphage virus at gene level(2020) Viruses, 12 (9), art. no. 1035, . DOI: 10.3390/v12091035 Gatto, V., Binati, R.L., Lemos Junior, W.J.F., Basile, A., Treu, L., de Almeida, O.G.G., Innocente, G., Campanaro, S., Torriani, S.New insights into the variability of lactic acid production in Lachancea thermotolerans at the phenotypic and genomic level(2020) Microbiological Research, 238, art. no. 126525, . DOI: 10.1016/j.micres.2020.126525 Kougias, P.G., Tsapekos, P., Treu, L., Kostoula, M., Campanaro, S., Lyberatos, G., Angelidaki, I.Biological CO<inf>2</inf> fixation in up-flow reactors via exogenous H<inf>2</inf> addition(2020) Journal of Biotechnology, 319, pp. 1-7. DOI: 10.1016/j.jbiotec.2020.05.012 Fasolo, A., Treu, L., Treu, L., Stevanato, P., Concheri, G., Campanaro, S., Squartini, A., Squartini, A.The hidden layers of microbial community structure: Extracting the concealed diversity dimensions from our sequencing data(2020) FEMS Microbiology Letters, 367 (11), art. no. fnaa086, . DOI: 10.1093/femsle/fnaa086 Crosato, G., Nadai, C., Carlot, M., Carlot, M., Garavaglia, J., Garavaglia, J., Ziegler, D.R., Rossi, R.C., De Castilhos, J., Campanaro, S., Treu, L., Giacomini, A., Giacomini, A., Corich, V., Corich, V.The impact of CUP1 gene copy-number and XVI-VIII/XV-XVI translocations on copper and sulfite tolerance in vineyard Saccharomyces cerevisiae strain populations(2020) FEMS Yeast Research, 20 (4), art. no. foaa028, . DOI: 10.1093/femsyr/foaa028 Campanaro, S., Treu, L., Rodriguez-R, L.M., Kovalovszki, A., Ziels, R.M., Maus, I., Zhu, X., Kougias, P.G., Basile, A., Luo, G., Schlüter, A., Konstantinidis, K.T., Angelidaki, I.New insights from the biogas microbiome by comprehensive genome-resolved metagenomics of nearly 1600 species originating from multiple anaerobic digesters(2020) Biotechnology for Biofuels, 13 (1), art. no. 25, . Cited 17 times.DOI: 10.1186/s13068-020-01679-y Zhu, X., Campanaro, S., Treu, L., Seshadri, R., Ivanova, N., Kougias, P.G., Kyrpides, N., Angelidaki, I.Metabolic dependencies govern microbial syntrophies during methanogenesis in an anaerobic digestion ecosystem(2020) Microbiome, 8 (1), art. no. 22, . Cited 8 times.DOI: 10.1186/s40168-019-0780-9
2019
da Silva Duarte, V., Giaretta, S., Campanaro, S., Treu, L., Armani, A., Tarrah, A., Oliveira de Paula, S., Giacomini, A., Corich, V.A Cryptic Non-Inducible Prophage Confers Phage-Immunity on the Streptococcus thermophilus M17PTZA496(2019) Viruses, 11 (1), . Cited 4 times.DOI: 10.3390/v11010007PUBMED ID: 30583530 Okamura, Y., Treu, L., Campanaro, S., Yamashita, S., Nakai, S., Takahashi, H., Watanabe, K., Angelidaki, I., Aki, T., Matsumura, Y., Nakashimada, Y.Complete genome sequence of Nitratireductor sp. strain OM-1: A lipid-producing bacterium with potential use in wastewater treatment(2019) Biotechnology Reports, 24, art. no. e00366, . DOI: 10.1016/j.btre.2019.e00366 Favaro, L., Cagnin, L., Corte, L., Roscini, L., De Pascale, F., Treu, L., Campanaro, S., Basaglia, M., van Zyl, W.H., Casella, S., Cardinali, G.Metabolomic Alterations Do Not Induce Metabolic Burden in the Industrial Yeast M2n[pBKD2-Pccbgl1]-C1 Engineered by Multiple δ-Integration of a Fungal β-Glucosidase Gene(2019) Frontiers in Bioengineering and Biotechnology, 7, art. no. 376, . Cited 1 time.DOI: 10.3389/fbioe.2019.00376 Iglesias-Iglesias, R., Campanaro, S., Treu, L., Kennes, C., Veiga, M.C.Valorization of sewage sludge for volatile fatty acids production and role of microbiome on acidogenic fermentation(2019) Bioresource Technology, 291, art. no. 121817, . Cited 7 times.DOI: 10.1016/j.biortech.2019.121817PUBMED ID: 31374412 Zhu, X., Campanaro, S., Treu, L., Kougias, P.G., Angelidaki, I.Novel ecological insights and functional roles during anaerobic digestion of saccharides unveiled by genome-centric metagenomics(2019) Water Research, 151, pp. 271-279. Cited 10 times.DOI: 10.1016/j.watres.2018.12.041PUBMED ID: 30612083 Porté, H., Kougias, P.G., Alfaro, N., Treu, L., Campanaro, S., Angelidaki, I.Process performance and microbial community structure in thermophilic trickling biofilter reactors for biogas upgrading(2019) Science of the Total Environment, 655, pp. 529-538. Cited 11 times.DOI: 10.1016/j.scitotenv.2018.11.289PUBMED ID: 30476832 Treu, L., Tsapekos, P., Peprah, M., Campanaro, S., Giacomini, A., Corich, V., Kougias, P.G., Angelidaki, I.Microbial profiling during anaerobic digestion of cheese whey in reactors operated at different conditions(2019) Bioresource Technology, 275, pp. 375-385. Cited 8 times.DOI: 10.1016/j.biortech.2018.12.084PUBMED ID: 30599281 Rafieenia, R., Pivato, A., Campanaro, S., Treu, L., Schievano, A., Lavagnolo, M.C.Study of microbial dynamics during optimization of hydrogen production from food waste by using LCFA-rich agent(2019) Bioresource Technology Reports, 5, pp. 157-163. DOI: 10.1016/j.biteb.2019.01.011 Lemos Junior, W.J.F., Fioravante Guerra, A., da Silva Duarte, V., Treu, L., Tarrah, A., Campanaro, S., Luchese, R.H., Giacomini, A., Corich, V.Draft genome sequence data of Lactobacillus paracasei strain DTA83 isolated from infant stools(2019) Data in Brief, 22, pp. 1064-1067. Cited 2 times.DOI: 10.1016/j.dib.2019.01.041 Fontana, A., Falasconi, I., Molinari, P., Treu, L., Basile, A., Vezzi, A., Campanaro, S.(*cl), Morelli, L.Genomic comparison of lactobacillus helveticusstrains highlights probiotic potential(2019) Frontiers in Microbiology, 10 (JUN), art. no. 1380, . Cited 4 times.DOI: 10.3389/fmicb.2019.01380
2018
Saleem, M., Lavagnolo, M.C., Campanaro, S., Squartini, A.Dynamic membrane bioreactor (DMBR) for the treatment of landfill leachate; bioreactor's performance and metagenomic insights into microbial community evolution(2018) Environmental Pollution, 243, pp. 326-335. Cited 7 times.DOI: 10.1016/j.envpol.2018.08.090PUBMED ID: 30195162 Campanaro, S.(*), Treu, L., Kougias, P.G., Zhu, X., Angelidaki, I.Taxonomy of anaerobic digestion microbiome reveals biases associated with the applied high throughput sequencing strategies(2018) Scientific Reports, 8 (1), art. no. 1926, . Cited 11 times.DOI: 10.1038/s41598-018-20414-0PUBMED ID: 29386622 Da Silva Duarte, V., Dias, R.S., Kropinski, A.M., Campanaro, S., Treu, L., Siqueira, C., Vieira, M.S., Da Silva Paes, I., Santana, G.R., Martins, F., Crispim, J.S., Da Silva Xavier, A., Ferro, C.G., Vidigal, P.M.P., Da Silva, C.C., De Paula, S.O.Genomic analysis and immune response in a murine mastitis model of vB-EcoM-UFV13, a potential biocontrol agent for use in dairy cows(2018) Scientific Reports, 8 (1), art. no. 6845, . Cited 5 times.DOI: 10.1038/s41598-018-24896-wPUBMED ID: 29717158 Fontana, A., Kougias, P.G., Treu, L., Kovalovszki, A., Valle, G., Cappa, F., Morelli, L., Angelidaki, I., Campanaro, S.(*)Microbial activity response to hydrogen injection in thermophilic anaerobic digesters revealed by genome-centric metatranscriptomics(2018) Microbiome, 6 (1), art. no. 194, . Cited 3 times.DOI: 10.1186/s40168-018-0583-4PUBMED ID: 30368244 Campanaro, S.(*), Treu, L., Kougias, P.G., Luo, G., Angelidaki, I.Metagenomic binning reveals the functional roles of core abundant microorganisms in twelve full-scale biogas plants(2018) Water Research, 140, pp. 123-134. Cited 33 times.DOI: 10.1016/j.watres.2018.04.043PUBMED ID: 29704757 Kougias, P.G., Campanaro, S.(*cf), Treu, L., Tsapekos, P., Armani, A., Angelidaki, I.Spatial distribution and diverse metabolic functions of lignocellulose-degrading uncultured bacteria as revealed by genomecentric metagenomics(2018) Applied and Environmental Microbiology, 84 (18), art. no. e01244-18, . Cited 4 times.DOI: 10.1128/AEM.01244-18PUBMED ID: 30006398 Treu, L., Kougias, P.G., de Diego-Díaz, B., Campanaro, S., Bassani, I., Fernández-Rodríguez, J., Angelidaki, I.Two-year microbial adaptation during hydrogen-mediated biogas upgrading process in a serial reactor configuration(2018) Bioresource Technology, 264, pp. 140-147. Cited 15 times.DOI: 10.1016/j.biortech.2018.05.070PUBMED ID: 29800774 Giaretta, S., Treu, L., Vendramin, V., Duarte, V.S., Tarrah, A., Campanaro, S., Corich, V., Giacomini, A.Comparative transcriptomic analysis of Streptococcus thermophilus TH1436 and TH1477 showing different capability in the use of galactose(2018) Frontiers in Microbiology, 9 (AUG), art. no. 1765, . Cited 6 times.DOI: 10.3389/fmicb.2018.01765 Ciciliot, S., Albiero, M., Campanaro, S., Poncina, N., Tedesco, S., Scattolini, V., Costa, F.D., Cignarella, A., Vettore, M., Di Gangi, I.M., Bogialli, S., Avogaro, A., Fadini, G.P.Interplay between gut microbiota and p66Shc affects obesity-associated insulin resistance(2018) FASEB Journal, 32 (7), pp. 4004-4015. Cited 4 times.DOI: 10.1096/fj.201701409RPUBMED ID: 29466053 Treu, L., Campanaro, S., Kougias, P.G., Sartori, C., Bassani, I., Angelidaki, I.Hydrogen-fueled microbial pathways in biogas upgrading systems revealed by genome-centric metagenomics(2018) Frontiers in Microbiology, 9 (MAY), art. no. 1079, . Cited 13 times.DOI: 10.3389/fmicb.2018.01079 Fontana, A., Campanaro, S., Treu, L., Kougias, P.G., Cappa, F., Morelli, L., Angelidaki, I.Performance and genome-centric metagenomics of thermophilic single and two-stage anaerobic digesters treating cheese wastes(2018) Water Research, 134, pp. 181-191. Cited 13 times.DOI: 10.1016/j.watres.2018.02.001PUBMED ID: 29427960 Angelidaki, I., Treu, L., Tsapekos, P., Luo, G., Campanaro, S., Wenzel, H., Kougias, P.G.Biogas upgrading and utilization: Current status and perspectives(2018) Biotechnology Advances, 36 (2), pp. 452-466. Cited 173 times.DOI: 10.1016/j.biotechadv.2018.01.011PUBMED ID: 29360505 Duarte, V.S., Giaretta, S., Treu, L., Campanaro, S., Vidigal, P.M.P., Tarrah, A., Giacomini, A., Corich, V.Draft genome sequences of three virulent Streptococcus thermophilus bacteriophages isolated from the dairy environment in the Veneto region of Italy(2018) Genome Announcements, 6 (10), art. no. e00045-18, . Cited 3 times.DOI: 10.1128/genomeA.00045-18 Ruiz-Sánchez, J., Campanaro, S., Guivernau, M., Fernández, B., Prenafeta-Boldú, F.X.Effect of ammonia on the active microbiome and metagenome from stable full-scale digesters(2018) Bioresource Technology, 250, pp. 513-522. Cited 12 times.DOI: 10.1016/j.biortech.2017.11.068PUBMED ID: 29197774 Zhu, X., Treu, L., Kougias, P.G., Campanaro, S., Angelidaki, I.Converting mesophilic upflow sludge blanket (UASB) reactors to thermophilic by applying axenic methanogenic culture bioaugmentation(2018) Chemical Engineering Journal, 332, pp. 508-516. Cited 11 times.DOI: 10.1016/j.cej.2017.09.113 Lemos Junior, W.J.F., Duarte, V.S., Treu, L., Campanaro, S.(*ca), Nadai, C., Giacomini, A., Corich, V.Whole genome comparison of two Starmerella bacillaris strains with other wine yeasts uncovers genes involved in modulating important winemaking traits(2018) FEMS Yeast Research, 18 (7), art. no. foy069, . Cited 2 times.DOI: 10.1093/femsyr/foy069PUBMED ID: 29961804 de Diego-Diaz, B., Treu, L., Campanaro, S., Duarte, V.S., Saviane, A., Cappellozza, S., Squartini, A.Genome sequence of Enterococcus mundtii EM01, isolated from Bombyx mori midgut and responsible for flacherie disease in silkworms reared on an artificial diet(2018) Genome Announcements, 6 (3), art. no. e01495-17, . DOI: 10.1128/genomeA.01495-17 de Diego-Diaz, B., Treu, L., Campanaro, S., da Silva Duarte, V., Basaglia, M., Favaro, L., Casella, S., Squartini, A.Genome sequence of Rhizobium sullae HCNT1 isolated from Hedysarum coronarium nodules and featuring peculiar denitrification phenotypes(2018) Genome Announcements, 6 (4), art. no. e01518-17, . Cited 1 time.DOI: 10.1128/genomeA.01518-17
2017
Zhu, X., Treu, L., Kougias, P.G., Campanaro, S., Angelidaki, I.Characterization of the planktonic microbiome in upflow anaerobic sludge blanket reactors during adaptation of mesophilic methanogenic granules to thermophilic operational conditions(2017) Anaerobe, 46, pp. 69-77. Cited 9 times.DOI: 10.1016/j.anaerobe.2016.12.015PUBMED ID: 28057558 Kougias, P.G., Campanaro, S.(*cf), Treu, L., Zhu, X., Angelidaki, I.A novel archaeal species belonging to Methanoculleus genus identified via de-novo assembly and metagenomic binning process in biogas reactors(2017) Anaerobe, 46, pp. 23-32. Cited 20 times.DOI: 10.1016/j.anaerobe.2017.02.009PUBMED ID: 28219787 Lemos Junior, W.J.F., Treu, L., Duarte, V.d.S., Carlot, M., Nadai, C., Campanaro, S., Giacomini, A., Corich, V.Whole-genome sequence of Starmerella bacillaris PAS13, a nonconventional enological yeast with antifungal activity(2017) Genome Announcements, 5 (32), art. no. e00788, . Cited 7 times.DOI: 10.1128/genomeA.00788-17 Duarte, V.S., Treu, L., Campanaro, S., Dias, R.S., Silva, C.C., Giacomini, A., Corich, V., de Paula, S.O.The complete genome sequence of Trueperella pyogenes UFV1 reveals a processing system involved in the quorumsensing signal response(2017) Genome Announcements, 5 (29), art. no. e00639-17, . Cited 1 time.DOI: 10.1128/genomeA.00639-17 Vendramin, V., Treu, L., Campanaro, S., Lombardi, A., Corich, V., Giacomini, A.Genome comparison and physiological characterization of eight Streptococcus thermophilus strains isolated from Italian dairy products(2017) Food Microbiology, 63, pp. 47-57. Cited 11 times.DOI: 10.1016/j.fm.2016.11.002PUBMED ID: 28040181 Campanaro, S.(*ca), Treu, L., Cattani, M., Kougias, P.G., Vendramin, V., Schiavon, S., Tagliapietra, F., Giacomini, A., Corich, V.In vitro fermentation of key dietary compounds with rumen fluid: A genome-centric perspective(2017) Science of the Total Environment, 584-585, pp. 683-691. Cited 9 times.DOI: 10.1016/j.scitotenv.2017.01.096PUBMED ID: 28131445 Zhu, X., Kougias, P.G., Treu, L., Campanaro, S., Angelidaki, I.Microbial community changes in methanogenic granules during the transition from mesophilic to thermophilic conditions(2017) Applied Microbiology and Biotechnology, 101 (3), pp. 1313-1322. Cited 22 times.DOI: 10.1007/s00253-016-8028-0PUBMED ID: 27942906 Kougias, P.G., Treu, L., Benavente, D.P., Boe, K., Campanaro, S., Angelidaki, I.Ex-situ biogas upgrading and enhancement in different reactor systems(2017) Bioresource Technology, 225, pp. 429-437. Cited 67 times.DOI: 10.1016/j.biortech.2016.11.124PUBMED ID: 27931939 Tsapekos, P., Kougias, P.G., Treu, L., Campanaro, S., Angelidaki, I.Process performance and comparative metagenomic analysis during co-digestion of manure and lignocellulosic biomass for biogas production(2017) Applied Energy, 185, pp. 126-135. Cited 69 times.DOI: 10.1016/j.apenergy.2016.10.081 Bassani, I., Kougias, P.G., Treu, L., Porté, H., Campanaro, S., Angelidaki, I.Optimization of hydrogen dispersion in thermophilic up-flow reactors for ex situ biogas upgrading(2017) Bioresource Technology, 234, pp. 310-319. Cited 25 times.DOI: 10.1016/j.biortech.2017.03.055PUBMED ID: 28340435 Jing, Y., Campanaro, S.(*cf), Kougias, P., Treu, L., Angelidaki, I., Zhang, S., Luo, G.Anaerobic granular sludge for simultaneous biomethanation of synthetic wastewater and CO with focus on the identification of CO-converting microorganisms(2017) Water Research, 126, pp. 19-28. Cited 16 times.DOI: 10.1016/j.watres.2017.09.018PUBMED ID: 28917117 Lemos Junior, W.L.F., Treu, L., da Silva Duarte, V., Campanaro, S., Nadai, C., Giacomini, A., Corich, V.Draft genome sequence of the yeast Starmerella bacillaris (syn., Candida zemplinina) FRI751 isolated from fermenting must of dried Raboso grapes(2017) Genome Announcements, 5 (17), art. no. e00224-17, . Cited 7 times.DOI: 10.1128/genomeA.00224-17 Tsapekos, P., Kougias, P.G., Vasileiou, S.A., Treu, L., Campanaro, S., Lyberatos, G., Angelidaki, I.Bioaugmentation with hydrolytic microbes to improve the anaerobic biodegradability of lignocellulosic agricultural residues(2017) Bioresource Technology, 234, pp. 350-359. Cited 33 times.DOI: 10.1016/j.biortech.2017.03.043PUBMED ID: 28340440
2016
Treu, L., Kougias, P.G., Campanaro, S., Bassani, I., Angelidaki, I.Deeper insight into the structure of the anaerobic digestion microbial community; The biogas microbiome database is expanded with 157 new genomes(2016) Bioresource Technology, 216, pp. 260-266. Cited 54 times.DOI: 10.1016/j.biortech.2016.05.081PUBMED ID: 27243603 Taha, Siddiqui, K.S., Campanaro, S., Najnin, T., Deshpande, N., Williams, T.J., Aldrich-Wright, J., Wilkins, M., Curmi, P.M., Cavicchioli, R.Single TRAM domain RNA-binding proteins in Archaea: functional insight from Ctr3 from the Antarctic methanogen Methanococcoides burtonii(2016) Environmental microbiology, 18 (9), pp. 2810-2824. Cited 9 times.DOI: 10.1111/1462-2920.13229PUBMED ID: 26769275 Rosselli, R., Romoli, O., Vitulo, N., Vezzi, A., Campanaro, S., De Pascale, F., Schiavon, R., Tiarca, M., Poletto, F., Concheri, G., Valle, G., Squartini, A.Direct 16S rRNA-seq from bacterial communities: A PCR-independent approach to simultaneously assess microbial diversity and functional activity potential of each taxon(2016) Scientific Reports, 6, art. no. 32165, . Cited 32 times.DOI: 10.1038/srep32165PUBMED ID: 27577787 Kougias, P.G., Treu, L., Campanaro, S.(*cf), Zhu, X., Angelidaki, I.Dynamic functional characterization and phylogenetic changes due to Long Chain Fatty Acids pulses in biogas reactors(2016) Scientific Reports, 6, art. no. 28810, . Cited 30 times.DOI: 10.1038/srep28810PUBMED ID: 27353502 Treu, L., Campanaro, S.(*ca), Kougias, P.G., Zhu, X., Angelidaki, I.Untangling the Effect of Fatty Acid Addition at Species Level Revealed Different Transcriptional Responses of the Biogas Microbial Community Members(2016) Environmental Science and Technology, 50 (11), pp. 6079-6090. Cited 34 times.DOI: 10.1021/acs.est.6b00296PUBMED ID: 27154312 Campanaro, S.(*), Treu, L., Kougias, P.G., De Francisci, D., Valle, G., Angelidaki, I.Metagenomic analysis and functional characterization of the biogas microbiome using high throughput shotgun sequencing and a novel binning strategy(2016) Biotechnology for Biofuels, 9 (1), art. no. 26, . Cited 102 times.DOI: 10.1186/s13068-016-0441-1 Nadai, C., Treu, L., Campanaro, S., Giacomini, A., Corich, V.Different mechanisms of resistance modulate sulfite tolerance in wine yeasts(2016) Applied Microbiology and Biotechnology, 100 (2), pp. 797-813. Cited 20 times.DOI: 10.1007/s00253-015-7169-xPUBMED ID: 26615396 Salvetti, E., Campanaro, S.(*cf), Campedelli, I., Fracchetti, F., Gobbi, A., Tornielli, G.B., Torriani, S., Felis, G.E.Whole-metagenome-sequencing-based community profiles of Vitis vinifera L. cv. Corvina berries withered in two post-harvest conditions(2016) Frontiers in Microbiology, 7 (JUN), art. no. 937, . Cited 13 times.https://www.scopus.com/inward/record.uri?eid=2-s2.0-84979997948&doi=10.3389%2ffmicb.2016.00937&partnerID=40&md5=259dd27fbf7c767de16538af888f1057DOI: 10.3389/fmicb.2016.00937
2015
Nadai, C., Campanaro, S., Giacomini, A., Corich, V.Selection and validation of reference genes for quantitative real-time PCR studies during Saccharomyces cerevisiae alcoholic fermentation in the presence of sulfite(2015) International Journal of Food Microbiology, 215, pp. 49-56. Cited 12 times.DOI: 10.1016/j.ijfoodmicro.2015.08.012PUBMED ID: 26325600 De Francisci, D., Kougias, P.G., Treu, L., Campanaro, S., Angelidaki, I.Microbial diversity and dynamicity of biogas reactors due to radical changes of feedstock composition(2015) Bioresource Technology, 176, pp. 56-64. Cited 63 times.DOI: 10.1016/j.biortech.2014.10.126PUBMED ID: 25460984
2014
Sardu, A., Treu, L., Campanaro, S.(*ca)Transcriptome structure variability in Saccharomyces cerevisiae strains determined with a newly developed assembly software(2014) BMC Genomics, 15 (1), art. no. 1045, . Cited 6 times.DOI: 10.1186/1471-2164-15-1045PUBMED ID: 25441755 Kougias, P.G., De Francisci, D., Treu, L., Campanaro, S., Angelidaki, I.Microbial analysis in biogas reactors suffering by foaming incidents(2014) Bioresource Technology, 167, pp. 24-32. Cited 28 times.DOI: 10.1016/j.biortech.2014.05.080PUBMED ID: 24968108 Vendramin, V., Treu, L., Bovo, B., Campanaro, S., Corich, V., Giacomini, A.Whole-genome sequence of Streptococcus macedonicus strain 33MO, isolated from the curd of Morlacco cheese in the Veneto region (Italy)(2014) Genome Announcements, 2 (4), art. no. e00746-14, . Cited 8 times.DOI: 10.1128/genomeA.00746-14 Treu, L., Vendramin, V., Bovo, B., Campanaro, S., Corich, V., Giacomini, A.Whole-genome sequences of Streptococcus thermophilus strains TH1435 and TH1436, isolated from raw goat milk(2014) Genome Announcements, 2 (1), art. no. e01129-13, . Cited 19 times.DOI: 10.1128/genomeA.e01129-13 Treu, L., Vendramin, V., Bovo, B., Giacomini, A., Corich, V., Campanaro, S.(*)Genome sequence of Lactobacillus fabifermentans strain T30PCM01, isolated from fermenting grape marc(2014) Genome Announcements, 2 (1), art. no. e00060-14, . Cited 5 times.DOI: 10.1128/genomeA.e00060-14 Treu, L., Vendramin, V., Bovo, B., Campanaro, S., Corich, V., Giacomini, A.Genome sequences of four Italian Streptococcus thermophilus strains of dairy origin(2014) Genome Announcements, 2 (2), art. no. e00126-14, . Cited 14 times.DOI: 10.1128/genomeA.00126-14 Treu, L., Vendramin, V., Bovo, B., Campanaro, S., Corich, V., Giacomini, A.Genome sequences of Streptococcus thermophilus strains MTH17CL396 and M17PTZA496 from fontina, an Italian PDO cheese(2014) Genome Announcements, 2 (1), art. no. e00067-14, . Cited 17 times.DOI: 10.1128/genomeA.e00067-14 Campanaro, S.(*), Treu, L., Vendramin, V., Bovo, B., Giacomini, A., Corich, V.Metagenomic analysis of the microbial community in fermented grape marc reveals that Lactobacillus fabifermentans is one of the dominant species: Insights into its genome structure(2014) Applied Microbiology and Biotechnology, 98 (13), pp. 6015-6037. Cited 27 times.DOI: 10.1007/s00253-014-5795-3 Treu, L., Toniolo, C., Nadai, C., Sardu, A., Giacomini, A., Corich, V., Campanaro, S.(*ca)The impact of genomic variability on gene expression in environmental Saccharomyces cerevisiae strains(2014) Environmental Microbiology, 16 (5), pp. 1378-1397. Cited 35 times.DOI: 10.1111/1462-2920.12327PUBMED ID: 24238297 Treu, L., Campanaro, S.(*cf), Nadai, C., Toniolo, C., Nardi, T., Giacomini, A., Valle, G., Blondin, B., Corich, V.Oxidative stress response and nitrogen utilization are strongly variable in Saccharomyces cerevisiae wine strains with different fermentation performances(2014) Applied Microbiology and Biotechnology, 98 (9), pp. 4119-4135. Cited 22 times.DOI: 10.1007/s00253-014-5679-6PUBMED ID: 24695828
2012
Campanaro, S.(*ca), Pascale, F.D., Telatin, A., Schiavon, R., Bartlett, D.H., Valle, G.The transcriptional landscape of the deep-sea bacterium Photobacterium profundum in both a toxR mutant and its parental strain(2012) BMC Genomics, 13 (1), art. no. 567, . Cited 13 times.DOI: 10.1186/1471-2164-13-567PUBMED ID: 23107454
2011
Belgrano, A., Rakicevic, L., Mittempergher, L., Campanaro, S., Martinelli, V.C., Mouly, V., Valle, G., Kojic, S., Faulkner, G.Multi-tasking role of the mechanosensing protein Ankrd2 in the signaling network of striated muscle(2011) PLoS ONE, 6 (10), art. no. e25519, . Cited 25 times.DOI: 10.1371/journal.pone.0025519PUBMED ID: 22016770 Campanaro, S.(*), Williams, T.J., Burg, D.W., De Francisci, D., Treu, L., Lauro, F.M., Cavicchioli, R.Temperature-dependent global gene expression in the Antarctic archaeon Methanococcoides burtonii(2011) Environmental Microbiology, 13 (8), pp. 2018-2038. Cited 43 times.DOI: 10.1111/j.1462-2920.2010.02367.xPUBMED ID: 21059163 De Francisci, D., Campanaro, S., Kornfeld, G., Siddiqui, K.S., Williams, T.J., Ertan, H., Treu, L., Pilak, O., Lauro, F.M., Harrop, S.J., Curmi, P.M.G., Cavicchioli, R.The RNA polymerase subunits E/F from the Antarctic archaeon Methanococcoides burtonii bind to specific species of mRNA(2011) Environmental Microbiology, 13 (8), pp. 2039-2055. Cited 3 times.DOI: 10.1111/j.1462-2920.2010.02385.xPUBMED ID: 21108724 Zulato, E., Favaretto, F., Veronese, C., Campanaro, S., Marshall, J.D., Romano, S., Cabrelle, A., Collin, G.B., Zavan, B., Belloni, A.S., Rampazzo, E., Naggert, J.K., Abatangelo, G., Sicolo, N., Maffei, P., Milan, G., Vettor, R.ALMS1-deficient fibroblasts over-express extra-cellular matrix components, display cell cycle delay and are resistant to apoptosis(2011) PLoS ONE, 6 (4), art. no. e19081, . Cited 36 times.DOI: 10.1371/journal.pone.0019081PUBMED ID: 21541333
2009
Feltrin, E., Campanaro, S., Diehl, A.D., Ehler, E., Faulkner, G., Fordham, J., Gardin, C., Harris, M., Hill, D., Knoell, R., Laveder, P., Mittempergher, L., Nori, A., Reggiani, C., Sorrentino, V., Volpe, P., Zara, I., Valle, G., Deegan Née Clark, J.Muscle research and gene ontology: New standards for improved data integration(2009) BMC Medical Genomics, 2, art. no. 6, . Cited 16 times.DOI: 10.1186/1755-8794-2-6
2008
Campanaro, S.(*ca), Treu, L., Valle, G.Protein evolution in deep sea bacteria: An analysis of amino acids substitution rates(2008) BMC Evolutionary Biology, 8 (1), art. no. 313, . Cited 27 times.DOI: 10.1186/1471-2148-8-313PUBMED ID: 19014525
2007
Campanaro, S.(*), Picelli, S., Torregrossa, R., Colluto, L., Ceol, M., Del Prete, D., D'Angelo, A., Valle, G., Anglani, F.Genes involved in TGFβ1-driven epithelial-mesenchymal transition of renal epithelial cells are topologically related in the human interactome map(2007) BMC Genomics, 8, art. no. 383, . Cited 16 times.DOI: 10.1186/1471-2164-8-383PUBMED ID: 17953753 Vitulo, N., Vezzi, A., Romualdi, C., Campanaro, S., Valle, G.A global gene evolution analysis on Vibrionaceae family using phylogenetic profile(2007) BMC Bioinformatics, 8 (SUPPL. 1), art. no. S23, . Cited 8 times.DOI: 10.1186/1471-2105-8-S1-S23PUBMED ID: 17430568 Simonato, F., Campanaro, S.(*cf), Lauro, F.M., Vezzi, A., D'Angelo, M., Vitulo, N., Valle, G., Bartlett, D.H.Piezophilic adaptation: a genomic point of view(2006) Journal of Biotechnology, 126 (1), pp. 11-25. Cited 99 times.DOI: 10.1016/j.jbiotec.2006.03.038PUBMED ID: 16780980
2006
Forner, F., Foster, L.J., Campanaro, S., Valle, G., Mann, M.Quantitative proteomic comparison of rat mitochondria from muscle, heart, and liver(2006) Molecular and Cellular Proteomics, 5 (4), pp. 608-619. Cited 231 times.DOI: 10.1074/mcp.M500298-MCP200PUBMED ID: 16415296
2005
Campanaro, S.(*), Vezzi, A., Vitulo, N., Lauro, F.M., D'Angelo, M., Simonato, F., Cestaro, A., Malacrida, G., Bertoloni, G., Valle, G., Bartlett, D.H.Laterally transferred elements and high pressure adaptation in Photobacterium profundum strains(2005) BMC Genomics, 6, art. no. 122, 15 p. Cited 65 times.DOI: 10.1186/1471-2164-6-122PUBMED ID: 16162277 Bean, C., Salamon, M., Raffaello, A., Campanaro, S., Pallavicini, A., Lanfranchi, G., Yaniv, M.The Ankrd2, Cdkn1c and calcyclin genes are under the control of MyoD during myogenic differentiation(2005) Journal of Molecular Biology, 349 (2), pp. 349-366. Cited 24 times.DOI: 10.1016/j.jmb.2005.03.063PUBMED ID: 15890200 Vezzi, A., Campanaro, S., D'Angelo, M., Simonato, F., Vitulo, N., Lauro, F.M., Cestaro, A., Malacrida, G., Simionati, B., Cannata, N., Romualdi, C., Bartlett, D.H., Valle, G.Life at depth: Photobacterium profundum genome sequence and expression analysis(2005) Science, 307 (5714), pp. 1459-1461. Cited 197 times.DOI: 10.1126/science.1103341PUBMED ID: 15746425
2003
Campanaro, S.(*), De Pittà, C., Celegato, B., Millino, C., Romualdi, C., Pacchioni, B., Trevisan, S., Bellin, M., Cagnin, S., Tombolan, L., Fanin, M., Pegoraro, E., Te Kronnie, G., Pescatori, M., Valle, G., Basso, G., Ricci, E., Angelini, C., Lanfranchi, G.Application of a cDNA micoarray for the analysis of muscular dystrophies and childhood leukemias(2003) Minerva Biotecnologica, 15 (4), pp. 235-244. Romualdi, C., Campanaro, S.(*), Campagna, D., Celegato, B., Cannata, N., Toppo, S., Valle, G., Lanfranchi, G.Pattern recognition in gene expression profiling using DNA array: A comparative study of different statistical methods applied to cancer classification(2003) Human Molecular Genetics, 12 (8), pp. 823-836. Cited 49 times.DOI: 10.1093/hmg/ddg093PUBMED ID: 12668606
2002
Campanaro, S.(*), Romualdi, C., Fanin, M., Celegato, B., Pacchioni, B., Trevisan, S., Laveder, P., De Pittà, C., Pegoraro, E., Hayashi, Y.K., Valle, G., Angelini, C., Lanfranchi, G.Gene expression profiling in dysferlinopathies using a dedicated muscle microarray(2002) Human Molecular Genetics, 11 (26), pp. 3283-3298. Cited 65 times.DOI: 10.1093/hmg/11.26.3283PUBMED ID: 12471055 Campanaro, S.(*), Romualdi, C., De Pittà, C., Fanin, M., Celegato, B., Pacchioni, B., Trevisan, S., Laveder, P., Toppo, S., Cagnin, S., Valle, G., Angelini, C., Lanfranchi, G.Gene expression profiling in skeletal muscle using a dedicated microarray(2002) Minerva Biotecnologica, 14 (3-4), pp. 273-279. Giaever, G., Chu, A.M., Ni, L., Connelly, C., Riles, L., Véronneau, S., Dow, S., Lucau-Danila, A., Anderson, K., André, B., Arkin, A.P., Astromoff, A., El Bakkoury, M., Bangham, R., Benito, R., Brachat, S., Campanaro, S., Curtiss, M., Davis, K., Deutschbauer, A., Entian, K.-D., Flaherty, P., Foury, F., Garfinkel, D.J., Gerstein, M., Gotte, D., Güldener, U., Hegemann, J.H., Hempel, S., Herman, Z., Jaramillo, D.F., Kelly, D.E., Kelly, S.L., Kötter, P., LaBonte, D., Lamb, D.C., Lan, N., Liang, H., Liao, H., Liu, L., Luo, C., Lussier, M., Mao, R., Menard, P., Ooi, S.L., Revuelta, J.L., Roberts, C.J., Rose, M., Ross-Macdonald, P., Scherens, B., Schimmack, G., Shafer, B., Shoemaker, D.D., Sookhai-Mahadeo, S., Storms, R.K., Strathern, J.N., Valle, G., Voet, M., Volckaert, G., Wang, C.-Y., Ward, T.R., Wilhelmy, J., Winzeler, E.A., Yang, Y., Yen, G., Youngman, E., Yu, K., Bussey, H., Boeke, J.D., Snyder, M., Philippsen, P., Davis, R.W., Johnston, M.Functional profiling of the Saccharomyces cerevisiae genome(2002) Nature, 418 (6896), pp. 387-391. Cited 2788 times.DOI: 10.1038/nature00935PUBMED ID: 12140549
2000
Capozzo, C., Sartorello, F., Dal Pero, F., D'Angelo, M., Vezzi, A., Campanaro, S., Valle, G.Gene disruption and basic phenotypic analysis of nine novel yeast genes from chromosome XIV(2000) Yeast, 16 (12), pp. 1089-1097. Cited 10 times.DOI: 10.1002/1097-0061(20000915)16:12<1089::AID-YEA600>3.0.CO;2-GPUBMED ID: 10953080