Software

Protected Software

1. P. Coupé, J.V Manjon, B. Mansencal. petBrain: AI-based A/T/N status estimation . IDDN.FR.001.290015.000.S.P.2025.000.31230

2. P. Coupé, J.V Manjon, S.M. Ortega. DeepCERES: Fast and accurate cerebellar lobules segmentation. IDDN.FR.001.290017.000.S.P.2025.000.31230

3. P. Coupé, J.V Manjon, M. Ruiz Pérez. DeepTHALAMUS: Fast and accurate thalamic nuclei segmentation. IDDN.FR.001.290016.000.S.P.2025.000.31230

4. P. Coupé, J.V Manjon, B. Mansencal. DiagnosticTree: differential diagnostic of neurological disoders  IDDN.FR.001.140033.000.S.C.2025.000.31230, 2025

5. F. Moranda, P. Coupé, J.V Manjon, B. Mansencal. volBrain platform  IDDN.FR.001.150017.000.S.P.2025.000.31230, 2025

6. P. Coupé, J.V Manjon, H-D. Nguyen, B. Mansencal, M. Clement. BrainDiseasisDiagnosis: Differential Diagnosis using Age Estimation IDDN.FR.001.210017.000.S.C.2024.000.31230, 2024

7. P. Coupé, J.V Manjon, H-D. Nguyen, B. Mansencal, M. Clement. BrainStructureAges: Age Estimation of Brain Structures. IDDN.FR.001.210016.000.S.C.2024.000.31230, 2024

8. P. Coupé, J.V Manjon, H-D. Nguyen, B. Mansencal, M. Clement. AssemblyNet-AD-FTD: Differential Diagnosis of Dementia. IDDN.FR.001.210015.000.S.C.2024.000.31230, 2024

9. P. Coupé, J.V Manjon, B. Mansencal. AssemblyNet-DB: Lifespan Database.  IDDN.FR.001.200013.000.S.P.2022.000.31230, 2022

10. P. Coupé, J.V Manjon, J Z Romero, B. Mansencal. vol2brain. IDDN.FR.001.070031.000.S.C.2022.000.31230, 2022

11. P. Coupé, J.V Manjon, H-D. Nguyen, B. Mansencal, M. Clement. AssemblyNet-AD: Automatic Diagnosis of Dementia. IDDN.FR.001.190026.000.S.C.2022.000.31230, 2022

12. P. Coupé, J.V Manjon, R.A Kamraoui, B. Mansencal. DeepLesionBrain: Brain lesion segmentation.  IDDN.FR.001.190024.000.S.C.2022.000.31230, 2022

13. J.V Manjon, P. Coupé. Deep ICE: Deep brain extraction software. FR.001.360009.000.S.P.2021.000.31230, 2021

14. P. Coupé, B. Mansencal, J.V Manjon. AssemblyNet: Full brain segmentation. FR.001.360008.000.S.C.2021.000.31230, 2021

15. J.V Manjon, P. Coupé. pBrain: Segmentation for Parkison’s disease. FR.001.360010.000.S.P.2021.000.31230, 2021

16. B. de Senneville, P. Coupé, J.V Manjon. RegQCNet: automatic quality control for brain MRI. FR.001.360011.000.S.P.2021.000.31230, 2021

17. J.V Manjon, P. Coupé. volBrain v1.1: MRI processing. IDDN.FR.001.050027.000.S.C.2021.000.31230, 2021. 

18. P. Coupé, J.V Manjon, T. Toudias. LesionBrain: Brain lesion segmentation. IDDN.FR.001.050026.000.S.C.2021.000.31230, 2021.

19.  J.V Manjon, P. Coupé, J.E Romero. HIPS: Hippocampus subfields segmentation. IDDN.FR.001.050029.000.S.C.2021.000.31230, 2021.

20. J.V Manjon, P. Coupé, J. E. Romero, R. Giraud, V-T. Ta. CERES: Cerebellum lobules segmentation. IDDN.FR.001.470006.000.S.C.2017.000.21000, 2017. 

21. P. Coupé, J.V Manjon. dtiBrain : DTI processing. IDDN.FR.001.310013.000.S.C.2016.000.21000, 2016.

22. J.V Manjon, P. Coupé. volBrain v1.0: MRI processing.  IDDN.FR.001.470008.000.S.P.2015.000.21000, 2015.

23. P. Coupé, P. Hellier, C. Barillot. INRIABrainshift. IDDN.FR.001.110024.000.S.P.2008.000.21000, 2008.

24. P. Coupé, P. Yger, S. Prima, P. Hellier, C Kervrann, C. Barillot. MONADE: Multimodal and Optimized Non local meAns DEnoising. IDDN.FR.001.070033.000.S.P.2007.000.21000, 2007.

25. P. Coupé, P. Hellier, C. Barillot. TULIPE : Three-dimensional ULtrasound reconstruction Incorporating ProbE trajectory. IDDN.FR.001.120034.000.A.2006.000.21000, 2006.

Software

1. P. Coupé, J.V Manjon, CANDLE Software. 2012.

2. P. Coupé, J.V. Manjon, MRI denoising Package, 2013. 

3. P. Coupé, J.V. Manjon, DWI denoising Package, 2014.