Inter. Conferences
2024
Perez-Caballero, Maria, Sergio Morell-Ortega, Marina Ruiz Perez, Pierrick Coupe, and Jose V. Manjon. Unsupervised Deep Learning Method for Bias Correction. In Medical Imaging with Deep Learning. 2024.
2023
Nguyen, Huy-Dung, Michaël Clément, Boris Mansencal, and Pierrick Coupé. 3D Transformer based on deformable patch location for differential diagnosis between Alzheimer’s disease and Frontotemporal dementia. In International Workshop on Machine Learning in Medical Imaging, pp. 53-63. Cham: Springer Nature Switzerland, 2023.
Di Giovanni, Daniel A., Pierrick Coupe, Danilo Bzdok, and D. Louis Collins. Image Entropy and Numeric Representation for MRI Semantic Segmentation. In Medical Imaging with Deep Learning, short paper track. 2023.
2022
H.-D. Nguyen, M. Clément, B. Mansencal, P. Coupé. Interpretable differential diagnosis for Alzheimer’s disease and Frontotemporal dementia. MICCAI 2022, page 55-65, 2022
2021
R. A. Kamraoui, V.-T. Ta, N. Papadakis, F. Compaire, J. V. Manjon, P Coupé. POPCORN: Progressive Pseudo-Labeling with Consistency Regularization and Neighboring. MICCAI 2021, Sep 2021, Strasbourg, pp.373-382, 2021
H.-D. Nguyen, M. Clément, B. Mansencal, P. Coupé. Deep Grading based on Collective Artificial Intelligence for AD Diagnosis and Prognosis. Workshop on Interpretability of Machine Intelligence in Medical Image Computing at MICCAI 2021, 2021
2020
K. Hett, H. Johnson, P. Coupé, J. Paulsen, J. Long, I. Oguz. Tensor-based grading: a novel patch-based grading approach for the analysis of deformation fields in Huntington's disease. ISBI'20, pp. 1091-1095. IEEE, 2020
J. V. Manjon, J. E. Romero, R. Vivo-Hernando, G. Rubio, F. Aparici, M. Iglesia-Vaya, T. Tourdias, P. Coupé. Blind MRI Brain lesion inpainting using Deep Learning. SASHIMI workshop at MICCAI2020, pp. 41-49. Springer, Cham, 2020
2019
P. Coupé, B. Mansencal, M. Clément, R. Giraud, B. Denis de Senneville, V.-T Ta, V. Lepetit, J. V. Manjon. AssemblyNet: A Novel Deep Decision-Making Process for Whole Brain MRI Segmentation. MICCAI'19, pp. 466-474. Springer, Cham, 2019.
V. M. Ramirez, F. Forbes, P. Coupé, M. Dojat. No structural differences are revealed by VBM in 'de novo' Parkinsonian patients. OHBM, 268-272, 2019.
N Elsaid, P. Coupé, Y.-C. Wu. Diffusion magnetic resonance imaging in the human hippocampal subfields using super-resolution HYDI. ISMRM19, 2019
N Elsaid, P. Coupé, A. Saykin, Y.-C. Wu. Structural connectivity mapping in the human hippocampal subfields using super-resolution HYDI . Alzheimer's & Dementia 15: P113-P113, 2019
2018
K. Hett, V-T. Ta, J. V. Manjon, P. Coupé. Graph of brain structures grading for early detection of Alzheimer's disease. International Conference On Medical Image Computing & Computer Assisted Intervention (MICCAI), pp. 429-436. Springer, Cham, 2018.
K. Hett, V-T. Ta, J. V. Manjon, P. Coupé. Graph of hippocampal subfields grading for Alzheimer's disease prediction. Machine Learning in Medical Imaging (MLMI), pp. 259-266. Springer, Cham, 2018. Oral presentation
P. Coupé, T. Tourdias, P. Linck, J. E. Romero, J. V. Manjon. LesionBrain: An Online Tool for White Matter Lesion Segmentation. International Workshop on Patch-based Techniques in Medical Imaging (Patch-MI). Springer International Publishing, pp. 95-103. Springer, Cham, 2018.
J. V. Manjon and P. Coupé. MRI Denoising using Deep Learning. International Workshop on Patch-based Techniques in Medical Imaging (Patch-MI). Springer International Publishing, pp. 12-19. Springer, Cham, 2018.
G Adan, T Solomon, L Turtle, J Saini, S Sinha, J Manjon, P Coupé, T Marson, S Keller. Quantitative MRI of the Brain in Patients with Neurocysticercosis and Epilepsy. Vol. 59, p:S131-S131, Epilepsia.
2017
A. Morin, J. Samper-Gonzales, A. Bertrand, E. Cavedo, S. Lista, D. Dormont, A. Mendes, P. Coupé, J. Ahdidan, M. Levy, A. Michon, D. Samri, M. Teichmann, H. Hampel, B. Dubois, S. Epelbaum, O. Colliot. Accuracy of MRI classification algorithms in a tertiary memory center clinical routine cohort. Alzheimer's & Dementia: The Journal of the Alzheimer's Association, 2017, vol. 13, no 7, p. 772-774.
I. Koubiyr, M. Deloire, J. Charre-Morin, A. Saubusse, P. Coupé, C. Dulau, T. Tourdias, P. Besson, J-P. Ranjeva, J. Pelletier, B. Audoin, B. Brochet, A. Ruet. Microstructural alterations precede subcortical deep grey matter volume loss in patients with clinically isolated syndrome. ECTRIMS Online Library. Oct 26, 2017; 200215.
I. Koubiyr, M. Deloire, J. Charre-Morin, A. Saubusse, P. Coupé, C. Dulau, T. Tourdias, P. Besson, J-P. Ranjeva, J. Pelletier, B. Audoin, B. Brochet, A. Ruet. Relationships between reorganization of functional brain network topology and cognition in clinically isolated syndrome: A 1 year Resting-state fMRI longitudinal study. ECTRIMS Online Library. Oct 26, 2017; 200169.
K. Hett, V.-T. Ta, J. V. Manjón, P. Coupé. Adaptive Fusion of Texture-Based Grading: Application to Alzheimer’s Disease Detection. International Workshop on Patch-based Techniques in Medical Imaging. Springer International Publishing, 2017.
J. V. Manjon and P. Coupé. Hippocampus Subfield Segmentation Using a Patch-Based Boosted Ensemble of Autocontext Neural Networks. International Workshop on Patch-based Techniques in Medical Imaging. Springer International Publishing, 2017.
G. Sanroma, V. Andrea, O. M Benkarim, J. V. Manjón, P. Coupé, O. Camara, G. Piella, M. A González Ballester. Early Prediction of Alzheimer’s Disease with Non-local Patch-Based Longitudinal Descriptors. International Workshop on Patch-based Techniques in Medical Imaging. Springer International Publishing, 2017.
2016
K. Hett, V.-T. Ta, R. Giraud, M. Mondino, J. V. Manjón, P. Coupé. Patch-based DTI grading: Application to Alzheimer's disease classification. International Workshop on Patch-based Techniques in Medical Imaging. Springer International Publishing, 2016. p. 76-83.
P. Coupé. C.-A. Deledalle, C. Dossal, M. Allard. Sparse-Based Morphometry: Principle and Application to Alzheimer’s Disease. International Workshop on Patch-based Techniques in Medical Imaging. Springer International Publishing, 2016. p. 43-50.
J. E. Romero, P. Coupé, J. V. Manjon. High resolution hippocampus subfield segmentation using multispectral multiatlas patch-based label fusion. International Workshop on Patch-based Techniques in Medical Imaging. Springer International Publishing, 2016. p. 117-124.
J. E. Romero, P. Coupé, J. V. Manjon. Non-local MRI Library-based Super-resolution: Application to Hippocampus Subfield Segmentation. International Workshop on Patch-based Techniques in Medical Imaging. Springer International Publishing, 2016. p. 68-75.
J. V. Manjón, P. Coupe, P. Raniga, Y. Xia, J. Fripp, O. Salvado. HIST: HyperIntensity Segmentation Tool. International Workshop on Patch-based Techniques in Medical Imaging. Springer International Publishing, 2016. p. 92-99.
S. Huhtaniska, I. Korkala, T. Heikka, J. Tohka, J. Manjon, P. Coupe, J. Remes, J. Moilanen, V. Kiviniemi, L. Björnholm, M. Isohanni, J. Veijola, G. Murray, E. Jääskeläinen, J. Miettunen. Lifetime antipsychotic use and brain structures in schizophrenia and other psychoses–43-year study of the Northern Finland Birth Cohort 1966. European Psychiatry, vol 33, S102-S103, 2016.
2015
V. Planche, A. Ruet, P. Coupe, D. Hamel, M. Deloire, F. Munsch, A. Saubusse, J. Charre-Morin, N. Moscufo, D. Meier, C.R. Guttmann, V. Dousset, B. Brochet, T. Tourdias. Hippocampal microstructural damage and memory impairment in clinically isolated syndrome. In Multiple Sclerosis Journal, vol. 21, pp. 363-363., 2015.
A. Moroso, A. Ruet, D. Hamel, F. Munsch, M. Deloire, P. Coupé, J.-C. Ouallet, V. Planche, N. Moscufo, D. Meier, T. Tourdias, C. Guttmann, V. Dousset, B. Brochet. Cerebellar sub-structures in cognitive impairment: volumetric and microstructural analyses at different stages of multiple sclerosis, In Multiple Sclerosis Journal, vol. 21, pp. 365-365, 2015.
J. V. Manjon, P. Coupé. volBrain: An online MRI brain volumetry system, Organization for Human Brain Mapping’15, 2015.
E. Næss-Schmidt, A. Tietze, I. Mikkelsen, M. Petersen, J.Blicher, P. Coupe, J. V. Manjón, S. Eskildsen. Patch-based segmentation from MP2RAGE images: comparison to conventional techniques. Patch-Based Techniques in Medical Imaging, page: 180-187, LNCS Volume 9467, 2015.
A Zandifar, V Fonov, P Coupé, J.C. Pruessner, D.L. Collins. A quantitative comparison between two manual hippocampal segmentation protocols, Alzheimer's & Dementia: The Journal of the Alzheimer's Association 11 (7):797, 2015.
2014
A Zandifar, V Fonov, P Coupé, J.C. Pruessner, D.L. Collins. A unified assessment of fully automated hippocampus segmentation methods, Alzheimer's & Dementia: The Journal of the Alzheimer's Association 10 (4):86, 2014.
M. Komlagan, V.-T. Ta, X. Pan, J.-P. Domenger, D. L. Collins, P. Coupé. Anatomically Constrained Weak Classifier Fusion for Early Detection of Alzheimer’s Disease, Machine Learning in Medical Imaging, pages 141-148, 2014.
S. F. Eskildsen, P. Coupé, V. Fonov, D. L. Collins. Detecting Alzheimer’s disease by morphological MRI using hippocampal grading and cortical thickness. CADDementia challenge on computer-aided diagnosis of dementia based on structural MRI, MICCAI’14, accepted, 2014.
V.-T. Ta, R. Giraud, D. L. Collins, P. Coupé. Optimized PatchMatch for Near Real Time and Accurate Label Fusion. MICCAI’14, pages 105-112, 2014. Oral presentation
P. Coupé, O Periot, J. V. Manjón, B. Hiba, M. Allard. Impact of DWI denoising on Tack-Density Imaging. Organization for Human Brain Mapping’14, 2014.
J. V. Manjón, P. Coupé, A. Buades. Non-local PCA-based MRI denoising. Organization for Human Brain Mapping’14, 2014.
S. St-Jean, P. Coupé, M. Descoteaux. Non Local Spatial and Angular Matching : a new denoising technique for diffusion MRI. International Symposium on Magnetic Resonance in Medicine (ISMRM'14), 2014.
2013
E. Garyfallidis, M. Paquette, S. St-Jean, P. Coupé, M. Descoteaux. Deconvolution enhanced Generalized Q-Sampling 2 and DSI deconvolution. ISBI'13, HARDI Reconstruction Challenge, page 18, 2013.
N. Guizard, K. Nakamura, P. Coupé, D. L. Arnold, D. L. Collins. Non-local MS MRI lesion inpainting method for image processing. endMS conference, Saint-Sauveur, Canada, 2013
M. Paquette, E. Garyfallidis, S. St-Jean, P. Coupé, M. Descoteaux. Particle Swarm Optimization in Multi-Tensor Imaging. ISBI'13, HARDI Reconstruction Challenge, page 16, 2013.
E. Garyfallidis, S. St-Jean, M. Paquette, P. Coupé, M. Descoteaux. Constrained spherical deconvolution on signal and ODF values. ISBI'13, HARDI Reconstruction Challenge, page 17, 2013. Winner of HARDI and DTI categories.
2012
S. F. Eskildsen, P. Coupé, D. Garcia-Lorenzo, V. Fonov, J. C. Pruessner, D. L. Collins, ADNI. Improving prediction of Alzheimer’s disease using patterns of cortical thinning and homogenizing images according to disease stage. MICCAI 2012 Workshop on Novel Imaging Biomarkers for Alzheimer's Disease and Related Disorders, pages 79-90, 2012. Oral presentation
P. Coupé, S. F. Eskildsen, J.V. Manjon, V. Fonov, J. C. Pruessner, M. Allard, D. L. Collins, ADNI. SNIPE: A New Method to Identify Imaging Biomarker for Early Detection of Alzheimer’s Disease. MICCAI 2012 Workshop on Novel Imaging Biomarkers for Alzheimer's Disease and Related Disorders, pages 41-51, 2012. Oral presentation
B. Aubert-Broche, V. Fonov, D. Garcia-Lorenzo, A Mouiha, N. Guizard, P. Coupe, S. F. Eskildsen, D. L. Collins. A new framework for analyzing structural volume changes of longitudinal brain MRI data. Spatio-temporal Image Analysis for Longitudinal and Time-Series Image Data, LNCS, Volume 7570, pp 50-62, 2012.
N. Guizard, V. S. Fonov, B. Aubert-Broche, P. Coupé, D. Garcia-Lorenzo, S. F. Eskildsen, D. L. Collins. Robust individual template pipeline for longitudinal MR images. MICCAI 2012 Atrophy measurement biomarkers using structural MRI for Alzheimer’s disease: a challenge to assess measurement reliability and bias, 2012.
V. Fonov, P. Coupé, S. F. Eskildsen, J.V. Manjon, D. L. Collins. Multi-atlas labeling with population-specific template and non-local patch-based label fusion. MICCAI 2012 Grand Challenge and Workshop on Multi-Atlas Labeling, pages 63-66, 2012 .
P. Coupé, J. V. Manjon, V. Fonov, S. F. Eskildsen, D. L. Collins and ADNI. Patch-Based Morphometry: Application to Alzheimer’s Disease. Alzheimer's Association International Conference, 2012.
S. F. Eskildsen, V. Fonov, P. Coupé, D. L. Collins and ADNI. Visualizing Stages of Cortical Atrophy in Progressive MCI From the ADNI Cohort. Alzheimer's Association International Conference, 2012.
V. S. Fonov, P. Coupé, M. Styner, D. L. Collins. Automatic lateral ventricle segmentation in infant population with high risk of autism. Organization for Human Brain Mapping, 2012.
S. F. Eskildsen, J. V. Manjon, P. Coupé, V. Fonov, D. L. Collins. Superresolution improves MRI cortical segmentation with FACE. Organization for Human Brain Mapping, 2012.
J. V. Manjón, P. Coupé, L. Concha, A. Buades, D. L. Collins, M. Robles. DWI denoising using overcomplete Local PCA Decomposition. ISMRM 2012, Melbourne, 2012.
2011
P. Coupé, S. F. Eskildsen, J. V. Manjon, V. Fonov, D. L. Collins and ADNI. Simultaneous Segmentation and Grading of Hippocampus for Patient Classification with Alzheimer’s Disease. MICCAI 2011, pages 149-157, vol 6893, 2011.
S. F. Eskildsen, P. Coupé, K. K. Leung, V. Fonov, N Guizard, S. Wassef, L. R. Østergaard, D. L. Collins and the ADNI. BEaST: Brain extraction using multiresolution nonlocal segmentation. MICCAI Workshop on Multi-Atlas Labeling and Statistical Fusion, pages 97–108, 2011. Oral presentation
S. Hu, P. Coupé, J. Pruessner, D. L. Collins. Validation of appearance-model based segmentation with patch-based refinement on medial temporal lobe structures. MICCAI Workshop on Multi-Atlas Labeling and Statistical Fusion, pages 28–37, 2011. Oral presentation
P. Coupé, V. Fonov, S. F. Eskildsen, J. V. Manjon, D. Arnold, D. L. Collins. Influence of the Training Library Composition on a Patch-based label fusion method: Application to Hippocampus Segmentation on ADNI dataset. Alzheimer’s and Dementia, Volume 7, Issue 4, Supplement 1, July 2011, Page S24, 2011.
V. Fonov, P. Coupé, S. F. Eskildsen, D. L. Collins. Atrophy specific MRI brain template for Alzheimer’s disease and Mild Cognitive Impairment. Alzheimer’s and Dementia, Volume 7, Issue 4, Supplement 1, July 2011, Page S58, 2011.
S.F. Eskildsen, V. Fonov, P. Coupé, L.R. Østergaard, D. L. Collins. Prediction of MCI converters in the ADNI cohort using patterns of cortical thinning. Alzheimer’s and Dementia, Volume 7, Issue 4, Supplement 1, July 2011, Page S211, 2011.
S.F. Eskildsen, V. Fonov, P. Coupé, L.R. Østergaard, D. L. Collins. Prediction of Alzheimer’s disease in subjects with mild cognitive impairment using structural patterns of cortical thinning. 15th Nordic - Baltic Conference on Biomedical Engineering and Medical Physics, Volume 34, pages 156–159, 2011. 2st place of the Young Investigators Award
S.F. Eskildsen, P. Coupé, V. Fonov, L.R. Østergaard, D. L. Collins. Effect of non-local means denoising on cortical segmentation accuracy with FACE. Organization for Human Brain Mapping 2011 Annual Meeting, 2011.
J. V. Manjón, P. Coupé, A. Buades, D. L. Collins, M. Robles. MRI denoising based on Sparseness and Self-Similarity. Organization for Human Brain Mapping’11, 2011.
N. Guizard, P. Coupé, V. Fonov, D. Arnold, D. L. Collins. Robust fusion of Jacobian maps for Deformation-Based Morphometry. Organization for Human Brain Mapping’11, 2011.
C. Haegelen, N. Guizard, P. Coupé, P. Jannin, X. Morandi, D. L. Collins. Validation of basal ganglia segmentation on a 3T MRI template. Organization for Human Brain Mapping’11, 2011.
2010
P. Coupé, J. V. Manjón, V. Fonov, J. Pruessner, M. Robles, D. L. Collins. Nonlocal Patch-based label fusion for Hippocampus Segmentation. MICCAI’10, pages 129–136, vol 3, 2010.
N. Guizard, P. Coupé, N. Stifani, S. Stifani, D. L. Collins. Robust 3D Reconstruction and Mean-Shift Clustering of Motoneurons from Serial Histological Images. MIAR’10, pages 191–199, 2010. MIAR Best Paper Award
P. Coupé, P. Hellier, X. Morandi, C. Barillot. Intraoperative ultrasonography for the correction of brainshift based on the matching of hyperechogenic structures. IEEE ISBI’10, pages 1405–1408, 2010. Oral presentation
P. Coupé, V. Fonov, J. V. Manjon, D. L. Collins. Template Construction using a Patch-based Robust Estimator. Organization for Human Brain Mapping’10, 2010.
C. Clouchoux, P. Coupé, J.V. Manjón, N. Guizard, M. Bouyssi-Kobar, M. Lefebvre, A. du Plessis, A.C. Evans, C. Limperopoulos. A novel approach for high-resolution image reconstruction for in-vivo fetal brain MRI. Organization for Human Brain Mapping’10, 2010.
C. Gaser, P. Coupé. Impact of Non-local Means filtering on Brain Tissue Segmentation. Organization for Human Brain Mapping’10, 2010.
2009
P. Coupé, J. V. Manjon, E. Gedamu, D. Arnold, M. Robles, D. L. Collins. An Object-based Method for Rician Noise Estimation in MR Images. MICCAI’09, pages 601–608, 2009.
P. Coupé, J. V. Manjon, M. Robles, D. L. Collins. Adaptive Multiresolution Denoising Filter for 3D MR Images. NeuroImage, Volume 47, Supplement 1, Organization for Human Brain Mapping’09, July 2009, Page S50.
J. V. Manjon, P. Coupé, L Marti-Bonmati, D. L. Collins, M. Robles. Spatially Adaptive Non-local MRI Denoising. NeuroImage, Volume 47, Supplement 1, Organization for Human Brain Mapping’09, July 2009, Page S72.
P. Coupé, J. V. Manjon, E. Gedamu, D. Arnold, M. Robles, D. L. Collins. Object-based Rician Noise Estimation for MR Images. NeuroImage, Volume 47, Supplement 1, Organization for Human Brain Mapping’09, July 2009, Page S81.
2008
N. Wiest-Daesslé, S. Prima, P. Coupé, S.P. Morrissey, C. Barillot. Rician noise removal by non-Local Means filtering for low signal-to-noise ratio MRI: applications to DT-MRI. In MICCAI’08, pages 171–179, 2008.
P. Coupé, P. Hellier, C. Kervrann, C. Barillot. Bayesian Non Local Means-based speckle filtering. In IEEE ISBI’08, pages 1291–1294. 2008. Oral presentation
P. Hellier, P. Coupé, P. Meyer, X. Morandi, L. Collins. Acoustic shadows detection, application to accurate reconstruction of 3D intraoperative ultrasound. In IEEE ISBI’08. pages 1569–1572, 2008.
2007
P. Coupé, P. Hellier, X. Morandi, C. Barillot. A probabilistic objective function for 3D rigid registration of intraoperative US and preoperative MR brain images. In IEEE ISBI’07, pages 1320–1323, 2007. Oral presentation
N. Wiest-Daesslé, S. Prima, P. Coupé, S.P. Morrissey, C. Barillot. Non-local means variants for denoising of diffusion-weighted and diffusion tensor MRI. In MICCAI’07, Volume 4792, pages 344–351, 2007.
C. Kervrann, J. Boulanger, P. Coupé. Bayesian non-local means filter, image redundancy and adaptive dictionaries for noise removal. In SSVM’ 07, Volume 4485, pages 520–532, 2007.
C. Barillot, P. Coupé, O. El Ganaoui, B. Gibaud, P. Hellier, P. Jannin, Paul P., Prima S., Wiest-Daessle N., Morandi X. Image Guidance in neurosurgical procedures, the “VISAGES” point of view. In IEEE ISBI’2007, pages 1056–1059, 2007. Invited paper
2006
P. Coupé, P. Yger, C. Barillot. Fast Non Local Means Denoising for 3D MR Images. In MICCAI’2006, Volume 4191, pages 33–40, 2006.
2005
P. Coupé, P. Hellier, N. Azzabou, C. Barillot. 3D Freehand Ultrasound Reconstruction based on Probe Trajectory. In MICCAI’2005, Volume 3749, pages 597–604, 2005.
2004
F. Ossant, R. Libgot, P. Coupé, P. Lermusiaux, F. Patat. High frequency ultrasound characterization of the coagulation process of whole blood. In IEEE International Ultrasonics, Ferroelectrics, and Frequency Control 50th Anniversary Joint Conference, Pages 846–849, 2004.
J. Bezy-Wendling, M. Kretowski, P. Coupé. Modeling of tumor conspicuity in hepatic CT images: combined compartment and vascular models. In IEEE ISBI’2004, Pages 444–447, 2004.