Journal Papers
2024
Koubiyr, Ismail, Takayuki Yamamoto, Simon Blyau, Reda A. Kamroui, Boris Mansencal, Vincent Planche, Laurent Petit ... Pierrick Coupé, Thomas Tourdias. "Vulnerability of Thalamic Nuclei at CSF Interface During the Entire Course of Multiple Sclerosis." Neurology: Neuroimmunology & Neuroinflammation 11, no. 3 (2024): e200222.
Attyé, Arnaud, Félix Renard, Vanina Anglade, Alexandre Krainik, Philippe Kahane, Boris Mansencal, Pierrick Coupé, and Fernando Calamante. Data-driven normative values based on generative manifold learning for quantitative MRI. Scientific Reports 14, no. 1 (2024): 7563.
Planche, Vincent, Boris Mansencal, Jose V. Manjon, Wassilios G. Meissner, Thomas Tourdias, and Pierrick Coupé. Staging of progressive supranuclear palsy-Richardson syndrome using MRI brain charts for the human lifespan. Brain Communications (2024): fcae055.
Nguyen, Huy‐Dung, Michaël Clément, Boris Mansencal, and Pierrick Coupé. Brain structure ages—A new biomarker for multi‐disease classification. Human Brain Mapping 45, no. 1 (2024): e26558.
2023
Bègue, Indrit, Yannis Elandaloussi, Farnaz Delavari, Hengyi Cao, Alexandra Moussa-Tooks, Mathilde Roser, Pierrick Coupé et al. The cerebellum and cognitive function: anatomical evidence from a transdiagnostic sample. The Cerebellum (2023): 1-12.
Huy-Dung Nguyen, Michaël Clément, Vincent Planche, Boris Mansencal, Pierrick Coupé. Deep grading for MRI-based differential diagnosis of Alzheimer's disease and Frontotemporal dementia. Artificial Intelligence in Medicine (2023).
Pierrick Coupé, Vincent Planche, Boris Mansencal, Reda A. Kamraoui, Ismail Koubiyr, Jose Manjon, and Thomas Tourdias. Lifespan Neurodegeneration Of The Human Brain In Multiple Sclerosis. Human Brain Mapping (2023).
Elandaloussi, Yannis, Dorothea L. Floris, Pierrick Coupé, Edouard Duchesnay, Angeline Mihailov, Antoine Grigis, Indrit Bègue et al. Understanding the relationship between cerebellar structure and social abilities. Molecular Autism 14, no. 1 (2023): 18.
Jayashree Chandrasekaran, Emilien Petit, Young Woo Park, Sophie Tezenas Du Montcel, James M Joers, Dinesh K Deelchand, Michal Považan, Guita Banan, Romain Valabregue, Philipp Ehses, Jennifer Faber, Pierrick Coupé, Chiadi U Onyike, Peter B Barker, Jeremy D Schmahmann, Eva‐Maria Ratai, SH Subramony, Thomas H Mareci, Khalaf O Bushara, Henry Paulson, Alexandra Durr, Thomas Klockgether, Tetsuo Ashizawa, Christophe Lenglet, Gülin Öz, READISCA Consortium. Clinically meaningful magnetic resonance endpoints sensitive to preataxic spinocerebellar ataxia types 1 and 3. Annals of neurology 93, no. 4 (2023): 686-701.
S. Sagnier, G. Catheline, B. Dilharreguy, P.-A. Linck, P. Coupé, F. Munsch, A. Bigourdan, M. Poli, S. Debruxelles, P. Renou, S. Olindo. François Rouanet, Vincent Dousset, Thomas Tourdias, I. Sibon. Microstructural Gray Matter Integrity Deteriorates After an Ischemic Stroke and Is Associated with Processing Speed. Translational stroke research (2023): 1-8.
Andrea McKavanagh, Adam Ridzuan-Allen, Barbara AK Kreilkamp, Yachin Chen, José V Manjón, Pierrick Coupé, Martyn Bracewell, Kumar Das, Peter N Taylor, Anthony G Marson, Simon S Keller. Midbrain structure volume, estimated myelin and functional connectivity in idiopathic generalised epilepsy. Epilepsy & Behaviour, 140, 109084, 2023.
Huy-Dung Nguyen, Michaël Clément, Boris Mansencal, Pierrick Coupé. Towards better interpretable and generalizable AD detection using collective artificial intelligence, Computerized Medical Imaging and Graphics104 (2023): 102171.
Vincent Planche, Boris Mansencal, José V Manjon, Thomas Tourdias, Gwenaëlle Catheline, Pierrick Coupé. Anatomical MRI staging of frontotemporal dementia variants. Alzheimer's & Dementia, 2023.
Charles Laidi, Nathan Neu, Aurélie Watilliaux, Axelle Martinez‐Teruel, Mihoby Razafinimanana, Jennifer Boisgontier, Sevan Hotier, Marc‐antoine d'Albis, Richard Delorme, Anouck Amestoy, Štefan Holiga, Myriam Ly‐Le Moal, Pierrick Coupé, Marion Leboyer, Josselin Houenou, Laure Rondi‐Reig, Anne‐lise Paradis. Preserved navigation abilities and spatio‐temporal memory in individuals with autism spectrum disorder. Autism Research 16, no. 2 (2023): 280-293.
S. Blyau, I. Koubiyr, M. Saranathan, P. Coupé, M. Deloire, J. Charré-Morin, A. Saubusse, B. Zhang, B. Rutt, V. Dousset, B. Brochet, A. Ruet, T. Tourdias. Differential vulnerability of thalamic nuclei in multiple sclerosis, Multiple Sclerosis Journal 29.2 (2023): 295-300.
2022
C. Laidi, D. L. Floris, J. Tillmann, Y. Elandaloussi, M. Zabihi, T. Charman, T. Wolfers, S. Durston, C. Moessnang, F. Dell’Acqua, C. Ecker, E. Loth, D. Murphy, S. Baron-Cohen, J. K Buitelaar, A. F Marquand, C. F Beckmann, V. Frouin, M. Leboyer, E. Duchesnay, P. Coupé, J. Houenou. Cerebellar atypicalities in autism? Biological Psychiatry 92.8 (2022): 674-682.
N. Elsaid, P. Coupé, A. J. Saykin, Y.-C. Wu. Structural connectivity mapping in human hippocampal-subfields using super-resolution hybrid diffusion imaging: a feasibility study. Neuroradiology (2022): 1-12.
S. Sagnier, G. Catheline, B. Dilharreguy, P.-A. Linck, P. Coupé, F. Munsch, A. Bigourdan, M. Poli, S. Debruxelles, P. Renou, S. Olindo, F. Rouanet, V. Dousset, T. Tourdias, I. Sibon. Normal-Appearing White Matter Deteriorates over the Year After an Ischemic Stroke and Is Associated with Global Cognition. Translational Stroke Research, 1-9, 2022.
R. Kamraoui, B. Mansencal, J.V. Manjon, P. Coupé. Longitudinal detection of new MS lesions using Deep Learning. Frontiers in Neuroimaging. vol 1, page 948235, 2022
T. Yamamoto, C. Lacheret, H. Fukutomi, R.A. Kamraoui, L. Denat, B. Zhang, V. Prevost, L. Zhang, A. Ruet, B. Triaire, V. Dousset, P. Coupé, T. Tourdias. Validation of a Denoising Method Using Deep Learning–Based Reconstruction to Quantify Multiple Sclerosis Lesion Load on Fast FLAIR Imaging, American Journal of Neuroradiology 43.8 (2022): 1099-1106.
P. Coupé, J. V. Manjón, B. Mansencal, T. Tourdias, G. Catheline, V. Planche. Hippocampal‐amygdalo‐ventricular atrophy score: Alzheimer disease detection using normative and pathological lifespan models. Human Brain Mapping 43.10 (2022): 3270-3282.
V. Planche, J. V. Manjon, B. Mansencal, E. Lanuza, T. Tourdias, G. Catheline, P. Coupé. Structural progression of Alzheimer’s disease over decades: the MRI staging scheme. Brain Communications 4, no. 3 (2022): fcac109.
L. Uzolas, J. Rico, P. Coupé, J. C. SanMiguel, G. Cserey. Deep Anomaly Generation: An Image Translation Approach of Synthesizing Abnormal Banded Chromosome Images. IEEE Access 10 (2022): 59090-59098.
J. V. Manjon, J.E. Romero, R. Vivo-Hernando, G. Rubio, F. Aparici, M. de la Iglesia-Vaya, P. Coupé. vol2Brain: A new online Pipeline for whole Brain MRI analysis, Frontiers in Neuroinformatics, volume 16, Article 862805, 2022.
R. A. Kamraoui, V.-T. Ta, T. Tourdias, B. Mansencal, J. V. Manjon, P. Coupé. DeepLesionBrain: Towards a broader deep-learning generalization for multiple sclerosis lesion segmentation, Medical Image Analysis, 76, 102312, 2022.
J. V. Manjon, J.E. Romero , P. Coupé. A novel deep learning based hippocampus subfield segmentation method, Nature Scientific Report, 12, 1333, 2022.
2021
J. V. Manjon, J.E. Romero, P. Coupé. Deep Learning based MRI contrast synthesis using full volume prediction. Biomedical Physics & Engineering Express 8.1 (2021): 015013.
B. Schmitz-Koep, B. Haller, P. Coupé, A. Menegaux, C. Gaser, C. Zimmer, D. Wolke, P. Bartmann, C. Sorg, D. M. Hedderich. Grey and White Matter Volume Changes after Preterm Birth: A Meta-Analytic Approach. Journal of Personalized Medicine 11.9 (2021): 868.
G. Pin, P. Coupé, L. Nadal, J. V. Manjon, C. Helmer, H. Amieva, B. Mazoyer, J.-F. Dartigues, G. Catheline, V. Planche. Distinct Hippocampal Subfields Atrophy in Older People With Vascular Brain Injuries. Stroke 52.5 (2021): 1741-1750.
J.E. Romero, P. Coupé, E. Lanuza, G. Catheline, J. V. Manjon. Towards a unified analysis of cerebellum maturation and aging across the entire lifespan: A MRI analysis. Human brain mapping 38.11 (2017): 5501-5518.
K. Hett, V-T. Ta, I. Oguz, J. V. Manjon, P. Coupé. Multi-scale Graph-based Grading for Alzheimer's Disease Prediction. Medical Image Analysis, 67, 101850, 2021.
B. de Senneville, P. Coupé, M. Ries, L. Facq, C. Moonen. Deep correction of breathing-related artifacts in real-time MR-thermometry, Computerized Medical Imaging and Graphics 87: 101834, 2021.
2020
P. Coupé, B. Mansencal, M. Clément, R. Giraud, B. Denis de Senneville, V.-T Ta, V. Lepetit, J. V. Manjon. AssemblyNet: A large ensemble of CNNs for 3D Whole Brain MRI Segmentation. NeuroImage, 219, 117026, 2020.
A. Morin, J. Samper-Gonzales, A. Bertrand, S. Stroer, D. Dormont, A. Mendes, P. Coupé, J. Ahdidan, M. Levy, D. Samri, H. Hampel, B. Dubois, M. Teichmann, S. Epelbaum, O. Colliot. Accuracy of MRI Classification Algorithms in a Tertiary Memory Center Clinical Routine Cohort. Journal of Alzheimer's Disease, IOS Press, 74(4):1157-1166, 2020.
L. Nadal, P. Coupé, C. Helmer, J. V. Manjon, H. Amieva, F. Tison, J-F. Dartigues, G. Catheline, V. Planche. Differential annualized rates of hippocampal subfields atrophy in aging and future Alzheimer's clinical syndrome. Neurobiology of aging, 90, 75-83, 2020.
D. Lamargue, I. Koubiyr, M. Deloire, A. Saubusse, J. Charre-Morin, A. Moroso, P. Coupé, B. Brochet, A. Ruet. Effect of cognitive rehabilitation on neuropsychological and semiecological testing and on daily cognitive functioning in multiple sclerosis: The REACTIV randomized controlled study. Journal of the Neurological Sciences, 415, 116929, 2020.
S. Sagnier, G. Catheline, B. Dilharreguy, P.-A. Linck P. Coupé, F. Munsch, A. Bigourdan, S. Debruxelles, M. Poli, S. Olindo, P. Reno, F. Rouanet, V. Dousset, S. Berthoz, T. Tourdias, I. Sibon. Normal Appearing White Matter Integrity Is a Predictor of Outcome After Ischemic Stroke. Stroke, 51 (2), 449-456, 2020.
B. de Senneville, J. V. Manjon, P. Coupé. RegQCNET: Deep quality control for image-to-template brain MRI affine registration, Physics in Medicine & Biology, 65(22), 225022, 2020.
J. V. Manjon, A Berto, J. E. Romero, E. Lanuza, R. Vivo-Hernando, F. Aparici-Robles, P. Coupé. pBrain: A novel pipeline for Parkinson related brain structure segmentation. NeuroImage: Clinical, 25, 102184, 2020.
J. V. Manjon, J. E. Romero, R. Vivo-Hernando, G. Rubio-Navarro, M. De la Iglesia-Vaya, F. Aparici-Robles, P. Coupé. Deep ICE: A Deep learning approach for MRI Intracranial Cavity Extraction. arXiv.
2019
J. V. Manjon, P. Coupé. MRI denoising using Deep Learning and Non-local averaging. arXiv.
P. Coupé, J. V. Manjon, E. Lanuza, G. Catheline. Lifespan changes of the human brain in Alzheimer's disease. Nature Scientific Report, 9 (1), 3998, 2019.
K. Hett, V.-T. Ta, G. Catheline, T. Tourdias, J. V Manjón, P. Coupé. Multimodal Hippocampal Subfield Grading For Alzheimer’s Disease Classification. Nature Scientific Report, 9 (1), 1-19, 2019.
C. Laidi, T. Hajek, F. Spaniel, M. Kolenic, M. d'Albis, S. Sarrazin, J. Mangin, E. Duchesnay, P. Brambilla, M. Wessa, J. Linke, M. Polosan, P. Favre, A. L. Versace, M. L. Phillips, J. V. Manjon, J. E. Romero, F. Hozer, M. Leboyer, P. Coupé, J. Houenou. Cerebellar parcellation in schizophrenia and bipolar disorder. Acta Psychiatrica Scandinavica, 140(5), 468-476, 2019
V. Planche, P. Coupé, C. Helmer, M. Le Goff, H. Amieva, F. Tison, J-F. Dartigues, G. Catheline. Evolution of brain atrophy subtypes during aging predicts long-term cognitive decline and future Alzheimer's clinical syndrome. Neurobiology of aging, 79, 22-29, 2019.
2018
V. Planche, I. Koubyr, J. E. Romero, J. V. Manjon, P. Coupé, M. Deloire, V. Dousset, B. Brochet, A. Ruet, T. Tourdias. Regional hippocampal vulnerability in early multiple sclerosis: a dynamic pathological spreading from dentate gyrus to CA1. Human Brain Mapping, 39(4), 1814-1824, 2018.
I. Koubiyr, M. Deloire, P. Coupé, C. Dulau, P. Besson, A. Moroso, V. Planche, T. Tourdias, B. Brochet, A. Ruet. Differential gray matter vulnerability in the one year following a clinically isolated syndrome. Frontiers in Neurology 9, page 824, 2018.
I. Koubiyr, M. Deloire, P. Besson, P. Coupé, C. Dulau, J. Pelletier, T. Tourdias, B. Audoin, B. Brochet, J-Ph. Ranjeva, A. Ruet. Longitudinal study of functional brain network reorganization in clinically isolated syndrome. Multiple Sclerosis Journal, 26(2), 188-200, 2018
K. Hett, V-T. Ta, J. V. Manjon, P. Coupé. Adaptive fusion of texture-based grading for Alzheimer's disease classification. Computerized Medical Imaging and Graphics, 70, 8-16, 2018.
S. Huhtaniska, L. Korkala, T. Heikka, L. Björnholm, H. Lehtiniemi, A. P Hulkko, J. Moilanen, J. Tohka, J. Manjón, P. Coupé, V. Kiviniemi, M. Isohanni, H. Koponen, G. K Murray, J. Miettunen, E. Jääskeläinen. Antipsychotic and benzodiazepine use and brain morphology in schizophrenia and affective psychoses–systematic reviews and birth cohort study. Psychiatry Research: Neuroimaging, 281, p43-52, 2018.
A. Carass, J. L. Cuzzocreo, S. Han, C. R. Hernandez-Castillo, P. E. Rasser, M. Ganz, V. Beliveau, M. Price, V. A. Cardenas, G. Fein, J. Dolz, I. Ben Ayed, C. Desrosiers, B. Thyreau, J. E. Romero, P. Coupé, J. V. Manjón, V. S. Fonov, D. L. Collins, S. H. Ying, D. Crocetti, B. A. Landman, S. H. M. ostofsky, P. A. T. hompson and J. L. Prince. Comparing fully automated state-of-the-art cerebellum parcellation from Magnetic Resonance Imaging. Neuroimage, 183, 150-172, 2018.
J. V. Manjón, P. Coupé, P. Raniga, Y. Xi, P. Desmond, J. Fripp, O. Salvado. MRI white matter lesion segmentation using an ensemble of neural networks and overcomplete patch-based voting. Computerized Medical Imaging and Graphics, 69, 43-51, 2018.
2017
J. E. Romero, P. Coupe, J. V. Manjón. HIPS: A new hippocampus subfield segmentation method. Neuroimage, 163, 286-295, 2017.
N. Tustison , B. Avants, H. Wang, L. Xie, P. Coupe, P. Yushkevich, J.V. Manjon. A patch-based framework for new ITK functionality: Joint fusion, denoising, and non-local super-resolution. Insight Journal, 2017.
P. Coupé, G. Catheline, E. Lanuza, J. V. Manjon. Towards a unified analysis of brain maturation and aging across the entire lifespan: A MRI analysis. Human Brain Mapping, 38(11), 5501-5518, 2017.
A. Moroso, A. Ruet, D. Lamargue-Hamel, F. Munsch, M. Deloire, P. Coupé, J. Charré-Morin, A. Saubusse, J.-C. Ouallet, V. Planche, T. Tourdias, V. Dousset, B. Brochet. Microstructural analyses of the posterior cerebellar lobules in relapsing-onset multiple sclerosis and their implication in cognitive impairment. PloS one, 12(8), e0182479, 2017.
A. Zandifar, F. Fonov, P. Coupé, J. Pruessner, D. L. Collins. A comparison of accurate automatic hippocampal segmentation methods. Neuroimage, 155, 383-393, 2017.
R. Giraud, V.-T. Ta, A. Bugeau, P. Coupé, N. Papadakis. SuperPatchMatch: An algorithm for robust correspondences using superpixel patches. IEEE Transactions on Image Processing, 26(8), 4068-4078, 2017.
S. Huhtaniska, E. Jääskeläinen, T. Heikka, J. S. Moilanen, H. Lehtiniemi, J. Tohka, J. V. Manjón, P. Coupé, L. Björnholm, H. Koponen, J. Veijola, M. Isohanni, V. Kiviniemi, G. K. Murray, J. Miettunen. Long-term antipsychotic and benzodiazepine use and brain volume changes in schizophrenia: The Northern Finland Birth Cohort 1966 study. Psychiatry Research: Neuroimaging, 266, p73-82, 2017.
J. E. Romero, P. Coupé, R. Giraud, V.-T. Ta, V. Fonov, M. T. M. Park, M. M. Chakravarty, A. N. Voineskos, J. V. Manjón. CERES: A new cerebellum lobule segmentation method. Neuroimage, 147, 916-924, 2017.
A. Moroso, A. Ruet, D. Lamargue-Hamel, F. Munsch, M. Deloire, P. Coupé, J.-C. Ouallet, V. Planche, N. Moscufo, D. Meier, T. Tourdias C. Guttmann, V. Dousset, B. Brochet. Posterior lobules of the cerebellum and information processing speed at various stages of multiple sclerosis. J Neurol Neurosurg Psychiatry, 88:146-151, 2017.
V. Planche, A. Ruet, P. Coupé, D. Lamargue-Hamel, M. Deloire, B. Pereira, J. V. Manjón, F. Munsch, N. Moscufo, D. S. Meier, C. R.G. Guttmann, V. Dousset, B. Brochet, T. Tourdias. Hippocampal microstructural damage and memory impairment in clinically isolated syndrome suggestive of multiple sclerosis: A diffusion tensor MRI study. Multiple Sclerosis Journal 23 (9), 1214-1224, 2017.
2016
L. Tellouck, M. Durieux, P. Coupé, A. Cougnard-Grégoire, J. Tellouck, T. Tourdias, F. Munsch, A. Garrigues, C. Helmer, F. Malet, J.-F. Dartigues, V. Dousset, C. Delcourt, C. Schweitzer. Optic radiations microstructural changes in glaucoma and association with severity: a study using 3-Tesla-magnetic resonance diffusion tensor imaging. Investigative Ophthalmology & Visual Science, vol. 57, no 15, p. 6539-6547, 2016.
J. V. Manjon and P. Coupé. volBrain: an online MRI brain volumetry system. Frontiers in Neuroinformatics, 30:10, 2016.
R. Giraud, V-T. Ta, N. Papadakis, J. V. Manjón, D. L. Collins, P. Coupé. An Optimized PatchMatch for Multi-scale and Multi-feature Label Fusion. NeuroImage, (124), 770-782, 2016.
E. T. Næss-Schmidt, A. Tietze, J. U. Blichera, M. Petersen, I. K. Mikkelsen, P. Coupé, J. V. Manjón, S. F. Eskildsen. Automatic thalamus and hippocampus segmentation from MP2RAGE: comparison of publicly available methods and implications for DTI quantification. IJCARS, 11(11):1979)1991, 2016.
A. Bigourdan, F. Munsch, P. Coupé, C. R. Guttmann, S. Sagnier, P. Renou, S. Debruxelles, M. Poli, V. Dousset, I. Sibon, T. Tourdias. Early fiber number ratio is a surrogate of corticospinal tract integrity and predicts motor recovery after stroke. Stroke, 47(4), 1053-1059, 2016.
S. St-Jean, P. Coupé, M. Descoteaux. Non Local Spatial and Angular Matching : Enabling higher spatial resolution diffusion MRI datasets through adaptive denoising. Medical Image Analysis, (32), 115-130, 2016.
2015
N. Guizard, K. Nakamura, P. Coupé, V. S. Fonov, D. L. Arnold, D. L. Collins. Non-local means inpainting of MS lesions in longitudinal image processing. Frontiers in Neuroscience, vol. 9, p. 456-456, 2015.
P. Coupé, V. S. Fonov, C. Bernard, A. Zandifar, S. F. Eskildsen, C. Helmer, J. V. Manjón, H. Amieva, J-F. Dartigues, M. Allard, G. Catheline, D. L. Collins, and ADNI. Detection of Alzheimer's Disease Signature in MR Images Seven Years Before Conversion to Dementia: Toward an Early Individual Prognosis. Human Brain Mapping, 36(12): 4758-4770, 2015.
N. Guizard, P. Coupé, V. Fonov, J. V. Manjon, A Douglas, D. L. Collins. Rotation-invariant multi-contrast non-local means for MS lesion segmentation. Neuroimage: Clinical, 8: 376-389, 2015.
J. E. Romero, J. V. Manjon, J. Tohka, P. Coupé, M. Robles. NABS: Non-local Automatic Brain Hemisphere Segmentation. Magnetic Resonance Imaging, 33(4): 474-484, 2015.
J. V. Manjon, P. Coupé, A. Buades. MRI Noise Estimation and Denoising Using Non-local PCA, Medical image analysis, 22(1): 35-47, 2015.
E. Bron, M. Smits, W. M van der Flier, H. Vrenken, F. Barkhof, P. Scheltens, J. M Papma, R. M Steketee, C. M. Orellana, R. Meijboom, M. Pinto, J. R Meireles, C. Garrett, A. J Bastos-Leite, A. Abdulkadir, O. Ronneberger, N. Amoroso, R. Bellotti, D. Cárdenas-Peña, A. M Álvarez-Meza, C. V Dolph, K. M Iftekharuddin, S. F Eskildsen, P. Coupé, V. S Fonov, K. Franke, C. Gaser, C. Ledig; R. Guerrero, T. Tong, K. R Gray, E. Moradi, J. Tohka, A. Routier, S. Durrleman, A. Sarica, G. Di Fatta, F. Sensi, A. Chincarini, G. M Smith, Z. V Stoyanov, L. Sørensen, M. Nielsen, S. Tangaro, P. Inglese, C. Wachinger, M. Reuter, J. C van Swieten, W. J Niessen, S. Klein. Standardized evaluation of algorithms for computer-aided diagnosis of dementia based on structural MRI: the CADDementia challenge. Neuroimage,111: 562-579, 2015
S.F. Eskildsen, P. Coupé, V. Fonov, J.C. Pruessner, D. L. Collins. Structural imaging biomarkers of Alzheimer's disease: predicting disease progression. Neurobiology of Aging, 36(1):S23-S31, 2015.
2014
J. V. Manjon, S.F. Eskildsen, P. Coupé, J. E. Romero, D. L. Collins, M. Robles. NICE: Non-local Intracranial Cavity Extraction. International Journal of Biomedical Imaging, Article ID 820205, 11 pages, http://dx.doi.org/10.1155/2014/820205, 2014.
S. Hu, P. Coupé, J.C. Pruessner, D. L. Collins. Nonlocal Regularization for Active Appearance Model: Application to medial Temporal Lobe Segmentation. Human brain mapping 35(2): 377-395, 2014.
2013
J. V. Manjon, P. Coupé, L. Concha, A. Buades, D. L. Collins, M. Robles. Diffusion Weighted Image Denoising using overcomplete Local PCA. PLoS ONE 8(9): e73021. doi:10.1371/journal.pone.0073021.
P. Coupé, J. V. Manjon, M. Chamberland, M. Descoteaux, B. Hiba. Collaborative patch-based super-resolution for diffusion-weighted images. NeuroImage, 83:245-261, 2013.
B. Aubert-Broche, V. Fonov, D. Garcia-Lorenzo, A. Mouiha, N. Guizard, P. Coupé, S. Eskildsen, D. L. Collins. A new method for structural volume analysis of longitudinal brain MRI data and its application in studying the growth trajectories of anatomical brain structures in childhood. NeuroImage 82: 393-402, 2013.
T. Tong, R. Wolz, P. Coupé, J. V. Hajnal, D. Rueckert and ADNI. Segmentation of MR images via Discriminative Dictionary Learning and Sparse Coding: Application to Hippocampus Labeling. NeuroImage 76: 11-23, 2013.
S. Hu, J.C. Pruessner, P. Coupé, D. L. Collins. Volumetric Analysis of Medial Temporal Lobe Structures in Brain Development from Childhood to Adolescence. Neuroimage 74: 276-287, 2013.
C. Haegelen, P Coupé, V. Fonov, N. Guizard, P. Jannin, X. Morandi, D. L. Collins. Automated segmentation of basal ganglia and deep brain structures in MRI of Parkinson’s disease . IJCARS, 8(1):99-110, 2013.
S. F. Eskildsen, P. Coupé, D. Garcia-Lorenzo, V. Fonov, J. Pruessner, D. L Collins and ADNI. Prediction of Alzheimer's disease in subjects with mild cognitive impairment from the ADNI cohort using patterns of cortical thinning. NeuroImage, 65:511-521, 2013.
2012
P. Coupé, S. F. Eskildsen, J. V. Manjon, V. Fonov, J. C. Pruessner, M. Allard, D. L. Collins and ADNI. Scoring by Nonlocal Image Patch Estimator for Early Detection of Alzheimer's Disease. NeuroImage: Clinical, 1(1):141–152, 2012.
S. J.-S. Chen, I. Reinertsen, P. Coupé, C. XB Yan, L. Mercier, D R. Del Maestro, D L. Collins. Validation of a hybrid Doppler ultrasound vessel-based registration algorithm for neurosurgery. IJCARS, 7(5):667-685, 2012.
P. Coupé, M. Munz, J. V. Manjon, E. Ruthazer, D. L. Collins. A CANDLE for a deeper in vivo insight. Medical Image Analysis, 16 (4):849-864, 2012.
P. Coupé, J. V Manjon, M. Robles, D. L. Collins. Adaptive multiresolution non-local means filter for three-dimensional magnetic resonance image denoising. IET Image Processing, 6(5): 558-568, 2012.
P. Coupé, P. Hellier, X. Morandi, C. Barillot. 3D Rigid Registration of Intraoperative Ultrasound and Preoperative MR Brain Images based on Hyperechogenic Structures. International Journal of Biomedical Imaging, Volume 2012 (2012), Article ID 531319, 14 pages. doi:10.1155/2012/531319.
S. F. Eskildsen, P. Coupé, K. K. Leung, V. Fonov, J. V. Manjon, N. Guizard, S. Wassef, L.R. Østergaard, D. L. Collins and ADNI. BEaST: Brain Extraction based on nonlocal Segmentation Technique. NeuroImage, 59(3):2362-2373, 2012.
P. Coupé, S. F. Eskildsen, J. V. Manjon, V. Fonov, D. L. Collins and ADNI. Simultaneous Segmentation and Grading of Anatomical Structures for Patient's Classification: Application to Alzheimer's Disease. NeuroImage, 59(4):3736–3747, 2012.
J. V. Manjon, P. Coupé, A. Buades, D. L. Collins, M. Robles. New Methods for MRI Denoising based on Sparseness and Self-Similarity. Medical Image Analysis, 16(1): 18-27, 2012.
2011
S. Hu, P. Coupé, J. Pruessner, D. L. Collins. Appearance-based Modeling for Segmentation of Hippocampus and Amygdala using Multi-contrast MR Imaging. NeuroImage, 58(2):549–559, 2011.
P. Coupé, J. V Manjon, V. Fonov, J. Pruessner, M. Robles, D. L. Collins. Patch-based Segmentation using Expert Priors: Application to Hippocampus and Ventricle Segmentation. NeuroImage, 54(2): 940–954, 2011.
F. P. Xavier de Fontes, G. A. Barroso, P. Coupé, Pierre Hellier. Real time ultrasound image denoising. Journal of Real-Time Image Processing, 6(1): 15–22, 2011.
2010
J. V. Manjon, P. Coupé, A. Buades, V. Fonov, D. L. Collins, M. Robles. Non-Local MRI Upsampling. Medical Image Analysis, 14(6): 784–792, 2010.
P. Coupé, J. V. Manjon, E. Gedamu, D. Arnold, M. Robles, D. L. Collins. Robust Rician Noise Estimation for MR Images. Medical Image Analysis, 14(4) : 483–493, 2010.
P. Hellier, P. Coupé, X. Morandi and D. L. Collins. An automatic geometrical and statistical method to detect acoustic shadows in intraoperative ultrasound brain images. Medical Image Analysis, 14(2) : 195–204, 2010.
J. V. Manjon, P. Coupé, L. Martí-Bonmatí, D. L. Collins, M. Robles. Adaptive Non-Local Means Denoising of MR Images with Spatially Varying Noise Levels. Journal of Magnetic Resonance Imaging, 31(1):192–203, 2010.
J. V Manjon, P. Coupé, A. Buades, D. L. Collins, M. Robles. MRI Superresolution Using Self Similarity and Image Priors. Article ID 425891, International Journal of Biomedical Imaging 2010.
2009
P. Coupé, P. Hellier, C. Kervrann, C. Barillot. NonLocal Means-based Speckle Filtering for Ultrasound Images. IEEE Transactions on Image Processing, 18(10):2221–9, 2009
2008
P. Coupé, P. Yger, S. Prima, P. Hellier, C. Kervrann, C. Barillot. An Optimized Blockwise NonLocal Means Denoising Filter for 3-D Magnetic Resonance Images. IEEE Transactions on Medical Imaging, 27(4):425–441, 2008.
P. Coupé, P. Hellier, S. Prima, C. Kervrann, C. Barillot. 3D Wavelet Subbands Mixing for Image Denoising. International Journal of Biomedical Imaging, 2008.
2007
P. Coupé, P. Hellier, X. Morandi, C. Barillot. Probe Trajectory Interpolation for 3D Reconstruction of Freehand Ultrasound. Medical Image Analysis, 11(6):604–15, 2007.
M. Kretowski, J. Bezy-Wendling, P. Coupé. Simulation of Biphasic CT Findings in Hepatic Cellular Carcinoma by a Two-level Physiological Model. IEEE Transactions on Biomedical Engineering, 54(3):538–542, 2007.