Štrojsová, M., Nedoma, J., Seďa, J., and Vrba, J. Diet quality impact on growth, reproduction and digestive activity in Brachionus calyciflorus. Journal of Plankton Research, 30: 1123–1131, 2008 (IF= 1.897).
Štrojsová, A., Nedoma, J., Štrojsová, M., Cao, X., and Vrba, J. The role of cell-surface-bound phosphatases in species competition within natural phytoplankton assemblage: an in situ experiment. Journal of Limnology, 67: 128–138, 2008 (IF= 2.375).
Mašín, M., Nedoma, J., Pechar, J., Koblížek, M. Distribution of aerobic anoxygenic phototrophs in temperate freshwater systems. Environmental Microbiology 10: 1988–1996, 2008 (IF= 4.929).
Znachor, P., Nedoma, J. Application of the PDMPO technique in studying silica deposition in natural populations of Fragilaria Crotonensis (Bacillariophyceae) at different depths in a eutrophic reservoir. Journal of Phycology, 44: 518–525, 2008 (IF= 2.820).
Šimek, K., Weinbauer, M.G., Horňák, K., Jezbera, J., Nedoma, J., Dolan, J.R. Grazer and virus-induced mortality of bacterioplankton accelerates development of Flectobacillus populations in a freshwater community. Environmental Microbiology, 9: 789–800, 2007 (IF= 4.929).
Znachor, P., Zapomělová, E., Řeháková, K., Nedoma, J., Šimek, K. The effect of extreme rainfall on summer succession and vertical distribution of phytoplankton in a lacustrine part of a eutrophic reservoir. Aquatic Sciences, 70: 77–86, 2008 (IF= 1.646).
Nedoma, J., Nedbalová, L. Chlorophyll content of Plešné Lake phytoplankton cells studied with image analysis. Biologia, Bratislava, 61/Suppl. 20: S491—S498, 2006 (IF= 0.213).
Nedoma, J., Vrba, J. Specific activity of cell-surface acid phosphatase in different bacterioplankton morphotypes in an acidified mountain lake. Environmental Microbiology, 8: 1271–1279, 2006 (IF= 4.630).
Štrojsová, A., Vrba, J., Nedoma, J., Šimek, K. Extracellular phosphatase activity of freshwater phytoplankton exposed to different in situ phosphorus concentrations. Marine and Freshwater Research, 56: 417-424, 2005 (IF= 1.478).
Štrojsová, A.,Vrba, J., Nedoma, J., Komárková, J., Znachor, P. Seasonal study of extracellular phosphatase expression in the phytoplankton of a eutrophic reservoir. European Journal of Phycology, 38: 295-306, 2003 (IF= 1.446).
Vrba, J., Nedoma, J., Kohout, L., Kopáček, J., Nedbalová, L., Ráčková, P., Šimek, K. Massive occurrence of heterotrophic flaments in acidified lakes: seasonal dynamics and composition. FEMS Microbiology Ecology, 46 (3): 281-294, 2003 (IF= 2.947).
Nedoma, J., Štrojsová, A., Vrba, J., Komárková, J., Šimek K. Extracellular phosphatase activity of natural plankton studied with ELF97 phosphate: fluorescence quantification and labelling kinetics. Environmental Microbiology, 5: 462-472, 2003 (IF= 3.699).
Nedoma, J., Vrba, J., Hanzl, T., Nedbalová, L. Quantification of pelagic filamentous microorganisms in aquatic environments using the line-intercept method. FEMS Microbiology Ecology, 38: 81-85, 2001 (IF= 2.847).