Papers

Selected papers

Šimek K, Mukherjee I, Nedoma J, Pires de Paula C, Jezberová J, Sirová D, Vrba J. CARD-FISH and prey tracer techniques reveal the role of overlooked flagellate groups as major bacterivores in freshwater hypertrophic shallow lakes. Environmental Microbiology 24 : 4256–4273, 2022.

Konopáčová E, Nedoma J, Čapková K, Čapek P, Znachor P, Pouzar M, Říha M, Řeháková K. Low specific phosphorus uptake affinity of epilithon in three oligo- to mesotrophic post-mining lakes. Frontiers in Microbiology 12 : 735498, 2021.

Shabarova T, Salcher M, Porcal P, Znachor P, Nedoma J, Grossart H, Seďa J, Hejzlar J, Šimek K. Recovery of freshwater microbial communities after extreme rain events is mediated by cyclic succession. Nature Microbiology 6 : 479–488, 2021.

Šimek K, Grujčić V, Mukherjee I, Kasalický V, Nedoma J, Posch T, Mehrshad M, Salcher M. Cascading effects in freshwater microbial food webs by predatory Cercozoa, Katablepharidacea and ciliates feeding on aplastidic bacterivorous cryptophytes FEMS Microbiology Ecology 96 : fiaa121, 2020.

Čtvrtlíková M, Kopáček J, Nedoma J, Znachor P, Vrba J. Only the adults survive - A long-term resistance of Isoetes lacustris to acidity and aluminium toxicity stress in a Bohemian Forest lake. Ecological Indicators 111: 106026, 2020. (IF=4.229)

Znachor P, Nedoma J, Hejzlar J, Seďa J, Komárková J, Kolář V, Mrkvička T, Boukal, DS. Changing environmental conditions underpin long-term patterns of phytoplankton in a freshwater reservoir. Science of the Total Environment 710: 135626, 2020. (IF=6.551)

Fecskeova LK, Piwosz K, Hanušová M, Nedoma J, Znachor P, Koblížek M. Diel changes and diversity of pufM expression in freshwater communities of anoxygenic phototrophic bacteria. Scientific Reports 9: 18766, 2019. (IF=4.011)

Šimek K, Grujcic V, Nedoma J, Jezberová J, Šorf M, Matoušů A, Pechar L, Posch T, Bruni EP, Vrba J. Microbial food webs in hypertrophic fishponds: Omnivorous ciliate taxa are major protistan bacterivores. Limnology and Oceanography 64: 2295–2309, 2019. (IF=4.325)

Gabaldon C, Devetter M, Hejzlar J, Šimek K, Znachor P, Nedoma J, Sed'a J. Seasonal strengths of the abiotic and biotic drivers of a zooplankton community. Freshwater Biology 64: 1326–1341, 2019. (IF=3.404)

Šimek K, Grujčič V, Hahn MW, Horňák K, Jezberová J, Kasalický V, Nedoma J, Salcher MM, Shabarova T. Bacterial prey food characteristics modulate community growth response of freshwater bacterivorous flagellates. Limnology and Oceanography 63: 484—502, 2018. (IF=3.595)

Vrba J, Macholdová M, Nedbalová L, Nedoma J, Šorf M. An Experimental Insight into Extracellular Phosphatases - Differential Induction of Cell-Specific Activity in Green Algae Cultured under Various Phosphorus Conditions. Frontiers in Microbiology 9, DOI: 10.3389/fmicb.2018.00271, 2018. (IF=4.019)

Znachor P, Nedoma J, Hejzlar J, Seďa J, Kopáček J, Boukal D, Mrkvička T. Multiple long-term trends and trend reversals dominate environmental conditions in a man-made freshwater reservoir. Science of the Total Environment 624: 24–33, 2018. (IF= 4.900)

Jezberová J, Jezbera J, Znachor P, Nedoma J, Kasalický V, Šimek K. The Limnohabitans Genus Harbors Generalistic and Opportunistic Subtypes: Evidence from Spatiotemporal Succession in a Canyon-Shaped Reservoir. Applied and Environmental Microbiology 83, DOI: 10.1128/AEM.01530-17, 2017. (IF=3.807)

Shabarova T, Kasalický V, Šimek K, Nedoma J, Znachor P, Posch T, Pernthaler J, Salcher MM. Distribution and ecological preferences of the freshwater lineage LimA (genus Limnohabitans) revealed by a new double hybridization approach. Environmental Microbiology 19: 1296-1309, 2017. (IF=5.395)

Gabaldon C, Devetter M, Hejzlar J, Šimek K, Znachor P, Nedoma J, Seďa J. Repeated flood disturbance enhances rotifer dominance and diversity in a zooplankton community of a small dammed mountain pond. Journal of Limnology 76: 292-304, 2017. (IF= 1.454)

Porcal P, Frejlachová K, Kopáček J, Nedoma J, Šavrdová T. Photochemical cleaving of allochthonous organic-metal complexes contributes to phosphorus immobilization in surface waters. Chemosphere 167: 374-381, 2017. (IF= 4.208)

Čtvrtlíková M, Hejzlar J, Vrba J, Kopáček J, Nedoma J, Hekera P, Wade AJ, Roy S. Lake water acidification and temperature have a lagged effect on the population dynamics of Isoetes echinospora via offspring recruitment. Ecological Indicators 70: 420-430, 2016. (IF= 3.898)

Znachor P, Rychtecký P, Nedoma J, Visocká V. Factors affecting growth and viability of natural diatom populations in the meso-eutrophic Římov Reservoir (Czech Republic). Hydrobiologia: DOI 10.1007/s10750-015-2417-8, 2015 (IF=2.27 ).

Rychtecký P, Znachor P, Nedoma J. Spatio-temporal study of phytoplankton cell viability in a eutrophic reservoir using SYTOX Green nucleic acid stain. Hydrobiologia 740: 177-189, 2014 (IF=2.27).

Šimek K, Nedoma J, Znachor P, Kasalicky V, Jezbera J, Hornak K, Seďa J. A finely tuned symphony of factors modulates the microbial food web of a freshwater reservoir in spring. Limnology and Oceanography 59: 1477-1492, 2014 (IF=3.79).

Znachor P, Visocká V, Nedoma J, Rychtecký P. Spatial heterogeneity of diatom silicification and growth in a eutrophic reservoir. Freshwater Biology 58: 1889–1902, 2013 (IF=3.93).

Šimek K, Kasalický V, Jezbera J, Horňák K, Nedoma J, Hahn MW, Bass D, Jost S, Boenigk J. Differential freshwater flagellate community response to bacterial food quality with a focus on Limnohabitans bacteria. ISME Journal 7: 1519–1530, 2013 (IF=8.95).

Čtvrtlíková M, Znachor P, Nedoma J, Vrba J. Effects of temperature on the phenology of germination of Isoetes echinospora. Preslia 84: 141–153, 2012 (IF=2.83).

Znachor P, Šimek K, Nedoma J. Bacterial colonization of the freshwater planktonic diatom Fragilaria crotonensis. Aquatic Microbial Ecology 66: 87–94,2012 (IF=2.04).

Znachor, P., Nedoma, J., Rychtecky, P. Kinetics of glucose stimulatory effect on silica deposition and growth of natural populations of Fragilaria crotonensis. Phycol Res 59: 123-128, 2011 (IF=1.19).

Tanaka, T., Thingstad, TF., Christaki, U., Colombet, J., Cornet-Barthaux, V., Courties, C., Grattepanche, JD., Lagaria, A., Nedoma, J., Oriol, L., Psarra, S., Pujo-Pay, M., Van Wambeke, F. Lack of P-limitation of phytoplankton and heterotrophic prokaryotes in surface waters of three anticyclonic eddies in the stratified Mediterranean Sea. BIOGEOSCIENCES 8: 525-538, 2011 (IF=3.59).

Šimek, K., Comerma, M., García, J-C., Nedoma, J., Marcé, R., and Armengol, J. The Effect of River Water Circulation on the Distribution and Functioning of Reservoir Microbial Communities as Determined by a Relative Distance Approach. Ecosystems, 14: 1–14, 2011 (IF=3.59).

Znachor, P., Nedoma J. Importance of dissolved organic carbon for phytoplankton nutrition in a eutrophic reservoir. Journal of Plankton Research 32: 367-376, 2010 (IF=1.707).

Duhamel, S., Gregori, G., Van Wambeke, F., and Nedoma, J. Detection of Extracellular Phosphatase Activity at the Single-Cell Level by Enzyme-Labeled Fluorescence and Flow Cytometry: The Importance of Time Kinetics in ELFA Labeling. Cytometry Part A, 75A: 163–168, 2009 (IF= 2.98).

Van Wambeke, F., Ghiglione, J. -F., Nedoma J., Mevel, G., Raimbault, P. Bottom up effects on bacterioplankton growth and composition during summer-autumn transition in the open NW Mediterranean Sea. Biogeosciences 6: 705-720, 2009 (IF=3.45),

Štrojsová, M., Nedoma, J., Seďa, J., and Vrba, J. Diet quality impact on growth, reproduction and digestive activity in Brachionus calyciflorus. Journal of Plankton Research, 30: 1123–1131, 2008 (IF= 1.897).

Štrojsová, A., Nedoma, J., Štrojsová, M., Cao, X., and Vrba, J. The role of cell-surface-bound phosphatases in species competition within natural phytoplankton assemblage: an in situ experiment. Journal of Limnology, 67: 128–138, 2008 (IF= 2.375).

Van Wambeke, F., Nedoma, J., Duhamel, S., Lebaron, P. Alkaline phosphatase activity of marine bacteria studied with ELF 97 substrate: success and limits in the P-limited Mediterranean Sea. Aquatic Microbial Ecology, 52: 245–251, 2008 (IF= 2.385).

Duhamel, S., Gregori, G., Van Wambeke, F., Mauriac, R., Nedoma, J. A method for analysing phosphatase activity in aquatic bacteria at the single cell level using flow cytometry. Journal of Microbiological Methods, 75: 269–278, 2008 (IF= 2.153).

Šimek, K., Horňák, K., Jezbera, J., Nedoma, J., Znachor, P., Hejzlar, J., Seďa, J. Spatio-temporal patterns of bacterioplankton production and community composition related to phytoplankton composition and protistan bacterivory in a dam reservoir. Aquatic Microbial Ecology, 51: 249–262, 2008 (IF= 2.385).

Mašín, M., Nedoma, J., Pechar, J., Koblížek, M. Distribution of aerobic anoxygenic phototrophs in temperate freshwater systems. Environmental Microbiology 10: 1988–1996, 2008 (IF= 4.929).

Znachor, P., Nedoma, J. Application of the PDMPO technique in studying silica deposition in natural populations of Fragilaria Crotonensis (Bacillariophyceae) at different depths in a eutrophic reservoir. Journal of Phycology, 44: 518–525, 2008 (IF= 2.820).

Znachor, P., Zapomělová, E., Řeháková, K., Nedoma, J., Šimek, K. The effect of extreme rainfall on summer succession and vertical distribution of phytoplankton in a lacustrine part of a eutrophic reservoir. Aquatic Sciences, 70: 77–86, 2008 (IF= 1.646).

Nedoma, J., Van Wambeke, F., Štrojsová, A., Štrojsová, M., Duhamel, S. Affinity of extracellular phosphatases for ELF97 phosphate in aquatic environments. Marine and Freshwater Research, 58: 454–460, 2007 (IF= 1.646).

Weinbauer, M.G., Horňák, K., Jezbera, J., Nedoma, J. , Dolan, J.R., Šimek, K. Synergistic and antagonistic effects of viral lysis and protistan grazing on bacterial biomass, production and diversity. Environmental Microbiology, 9: 777–788, 2007 (IF= 4.929).

Šimek, K., Weinbauer, M.G., Horňák, K., Jezbera, J., Nedoma, J., Dolan, J.R. Grazer and virus-induced mortality of bacterioplankton accelerates development of Flectobacillus populations in a freshwater community. Environmental Microbiology, 9: 789–800, 2007 (IF= 4.929).

Nedoma, J., Nedbalová, L. Chlorophyll content of Plešné Lake phytoplankton cells studied with image analysis. Biologia, Bratislava, 61/Suppl. 20: S491—S498, 2006 (IF= 0.213).

Komárková, J., Nedoma, J. The CYATAXO Database. Czech Phycology, 6: 49-54, 2006 (no IF).

Vrba, J., Kopáček, J., Bittl, T., Nedoma, J., Štrojsová, A., Nedbalová, L., Kohout, L., Fott, J. A key role of aluminium in phosphorus availability, food web structure, and plankton dynamics in strongly acidified lakes. Biologia, Bratislava, 61/Suppl. 20: S441—S451, 2006 (IF= 0.213).

Straškrábová, V., Cogalniceanu, D., Nedoma, J., Parpală, L., Postolache, C., Tudorancea, C., Vădineanu, A., Vălcu, C.-M., Zinevici, V. Bacteria and pelagic food webs in Pristine alpine lakes (Retezat mountains, Romania). Transylvanian Review of Systematic and Ecological Research, 3: 1–10, 2006 (no IF).

Horňák, K., Jezbera, J., Nedoma, J., Gasol, J.M., Šimek, K. Effects of resource availability and bacterivory on leucine incorporation in different groups of freshwater bacterioplankton, assessed using microautoradiography. Aquatic Microbial Ecology, 45: 277–289, 2006 (IF= 2.209).

Nedoma, J., García, J.-C., Comerma, M., Šimek, K., Armengol, J. Extracellular phosphatases in a Mediterranean reservoir: seasonal, spatial and kinetic heterogeneity. Freshwater Biology, 51: 1264–1276, 2006 (IF= 2.502).

Šimek, K., Horňák, K., Jezbera, J., Nedoma, J., Vrba, J., Straškrábová, V., Macek, M., Dolan, J.R., Hahn, M.W. Maximum growth rates and possible life strategies of different bacterioplankton groups in relation to phosphorus availability in a freshwater reservoir. Environmental Microbiology, 8: 1613-1624, 2006 (IF= 4.630).

Nedoma, J., Vrba, J. Specific activity of cell-surface acid phosphatase in different bacterioplankton morphotypes in an acidified mountain lake. Environmental Microbiology, 8: 1271–1279, 2006 (IF= 4.630).

Znachor, P., Vrba, J., Nedoma, J., Kopáček, J. Bacterial and phytoplankton responses to nutrient and pH changes during short term in situ experiments in two acidified lakes. Arch Hydrobiol, 156: 79–99, 2005 (no IF).

Horňák, K., Mašín, M., Jezbera, J., Bettarel, Y., Nedoma, J., Sime-Ngando, T., and Šimek, K. Effects of decreased resource availability, protozoan grazing and viral impact on a structure of bacterioplankton assemblage in a canyon-shaped reservoir. FEMS Microbiology Ecology, 52: 315-327, 2005 (IF= 2.787).

Šimek, K., Horňák, K., Jezbera, J., Mašín, M., Nedoma, J., Gasol, J.M., Schauer, M. Influence of top-down and bottom-up manipulations on the R-BT065 subcluster of beta-proteobacteria, an abundant group in bacterioplankton of a freshwater reservoir. Applied and Environmental Microbiology, 71: 2381-2390, 2005 (IF= 3.818).

Štrojsová, A., Vrba, J., Nedoma, J., Šimek, K. Extracellular phosphatase activity of freshwater phytoplankton exposed to different in situ phosphorus concentrations. Marine and Freshwater Research, 56: 417-424, 2005 (IF= 1.478).

Straškrábová, V., Izmest’eva, L.R., Maksimova, E.A., Fietz, S., Nedoma, J., Borovec, J., Kobanova, G.I., Shchetinina, E.V., Pislegina, E.V. Primary production and microbial activity in the euphotic zone of Lake Baikal (Southern Basin) during late winter. Global and Planetary Change, Special issue (Eds: Oberhänsli, H and Mackay, A.W.) 46 (1-4): 57-73, 2005 (IF= 2.223).

Kopáček, J., Brzáková, M., Hejzlar, J., Nedoma, J., Porcal, P., Vrba, J. Nutrient cycling in a strongly acidified mesotrophic lake. Limnology and Oceanography, 49 (4): 1202–1213, 2004 (IF= 3.024).

Vrba, J., Callieri, C., Bittl, T., Šimek, K., Bertoni, R., Filandr, P., Hartman, P., Hejzlar, J., Macek, M., Nedoma, J. Are bacteria the major producers of extracellular glycolytic enzymes in aquatic environments? International Review of Hydrobiology, 89 (1): 102-117, 2004 (IF= 0.742).

Znachor, P., Nedoma, J. Cell specific primary production of autotrophic and mixotrophic phytoplankton in acidified lakes of the Bohemian Forest. Algological Studies, 112: 141-155, 2004 (no IF).

Nedoma, J., Padisák, J., Koschel, R. Utilisation of 32P-labelled nucleotide- and non-nucleotide dissolved organic phosphorus by freshwater plankton. Archiv für Hydrobiologie, Advances in Limnology, 58: 87-99, 2003 (no IF).

Brzáková, M., Hejzlar, J., Nedoma J. Phosphorus uptake by suspended and settling seston in a stratified reservoir. Hydrobiologia, 504 (Special Issue): 39-49, 2003 (IF= 0.720).

Jezbera, J., Nedoma, J., Šimek, K. Longitudinal changes in protistan bacterivory and bacterial production in two canyon-shaped reservoirs of different trophic status. Hydrobiologia, 504 (Special Issue): 115-130, 2003 (IF= 0.720).

Mašín, M., Jezbera, J., Nedoma J., Straškrabová, V., Hejzlar J., Šimek, K. Changes in bacterial community composition and microbial activities along the longitudinal axis of two canyon-shaped reservoirs with different inflow loading. Hydrobiologia, 504 (Special Issue): 99-113, 2003 (IF= 0.720).

Nedoma, J., Straškrábová, V., Znachor, P., Vrba, J. Primary and bacterial production in three acidified lakes in the Bohemian Forest. Silva Gabreta, 9: 53-70, 2003 (no IF).

Šimek, K., Horňák, K., Mašín, M., Christaki, U., Nedoma, J., Weinbauer, M.G., Dolan, J.R. Comparing the effects of resource enrichment and grazing on a bacterioplankton community of a meso-eutrophic reservoir. Aquatic Microbial Ecology, 31: 123-135, 2003 (IF= 2.116).

Štrojsová, A.,Vrba, J., Nedoma, J., Komárková, J., Znachor, P. Seasonal study of extracellular phosphatase expression in the phytoplankton of a eutrophic reservoir. European Journal of Phycology, 38: 295-306, 2003 (IF= 1.446).

Vrba, J., Nedoma, J., Kohout, L., Kopáček, J., Nedbalová, L., Ráčková, P., Šimek, K. Massive occurrence of heterotrophic flaments in acidified lakes: seasonal dynamics and composition. FEMS Microbiology Ecology, 46 (3): 281-294, 2003 (IF= 2.947).

Weinbauer, M.G., Christaki, U., Nedoma, J., Šimek, K. Comparing the effects of resource enrichment and grazing on viral production in a meso-eutrophic reservoir. Aquatic Microbial Ecology, 31: 137-144, 2003 (IF= 2.116).

Nedoma, J., Štrojsová, A., Vrba, J., Komárková, J., Šimek K. Extracellular phosphatase activity of natural plankton studied with ELF97 phosphate: fluorescence quantification and labelling kinetics. Environmental Microbiology, 5: 462-472, 2003 (IF= 3.699).

Šimek, K., Nedoma, J., Pernthaler, J., Posch, T., Dolan, J. R. Altering the balance between bacterial production and protistan bacterivory triggers shifts in freshwater bacterial community composition. Antonie van Leeuwenhoek, 81: 453-463, 2002 (IF= 0.988).

Bittl, T., Vrba, J., Nedoma, J., Kopáček, J. Impact of ionic aluminium on extracellular phosphatases in acidified lakes. Environmental Microbiology, 3: 578-587, 2001 (no IF).

Nedoma, J., Vrba, J., Hanzl, T., Nedbalová, L. Quantification of pelagic filamentous microorganisms in aquatic environments using the line-intercept method. FEMS Microbiology Ecology, 38: 81-85, 2001 (IF= 2.847).

Šimek, K., Armengol, J., Comerma, M., Garcia, J.C., Kojecká, P., Nedoma, J., Hejzlar, J. Changes in the epilimnetic bacterial community composition, production, and protist-induced mortality along the longitudinal axis of a highly eutrophic reservoir. Microbial Ecology, 42: 359-371, 2001 (IF= 2.891).

Šimek, K., Pernthaler, J., Weinbauer, M.G., Horňák, K., Dolan, J.R., Nedoma, J., Mašín, M., Amann, R. Changes in bacterial community composition and dynamics and viral mortality rates associated with enhanced flagellate grazing in a mesoeutrophic reservoir. Applied and Environmental Microbiology, 6: 2723-2733, 2001 (IF= 3.688).

Straškrabová, V., Fott, J., Hartman, P., Macek, M., Nedoma, J., Šimek, K., Vrba, J. Structure of pelagic food webs in low-alkalinity lakes – forested and alpine catchments. Silva Gabreta, 4: 199-212, 2000 (no IF).

Šimek, K., Jürgens, K., Nedoma, J., Comerma, M., Armengol, J. Ecological role and bacterial grazing of Halteria spp.: small freshwater oligotrichs as dominant pelagic ciliate bacterivores. Aquatic Microbial Ecology, 22: 43-56, 2000 (IF= 2.190).

Kopáček, J., Hejzlar, J., Porcal, P., Nedoma, J. Chemistry of Prášilské Lake and its tributaries during the 1998 summer temperature stratification. Silva Gabreta, 3: 33-48, 1999 (no IF).

Posch, T., Šimek, K., Vrba, J., Pernthaler, J., Nedoma, J., Sattler, B., Sonntag, B., Psenner, R. Predator-induced changes of bacterial size-structure and productivity studied on an experimental microbial community. Aquatic Microbial Ecology, 18: 235-246., 1999 (IF= 2.676).

Straškrabová, V., Callieri, C., Carrillo, P., Cruz-Pizarro, L., Fott, J., Hartman, P., Macek, M., Medina-Sánchez, J. M., Nedoma, J., Šimek, K. Investigations on pelagic food webs in mountain lakes – aims and methods. Journal of Limnology, 58: 77-87, 1999 (no IF).

Šimek, K., Kojecká, P., Nedoma, J., Hartman, P., Vrba, J., Dolan, J. R. Shifts in bacterial community composition associated with different microzooplankton size fractions in a eutrophic reservoir. Limnology and Oceanography, 44: 1634-1644, 1999 (IF= 3.018).

Šimek, K., Babenzien, D., Bittl, T., Koschel, R., Macek, M., Nedoma, J., Vrba, J. Microbial food webs in an artificially divided acidic bog lake. Int. Revue Hydrobiol. 83: 3–18, 1998 (IF= 0.632).

Padisák, J., Krienitz, L., Koschel, R., Nedoma, J. Deep-layer autotrophic picoplankton maximum in the oligotrophic Lake Stechlin, Germany: origin, activity, development and erosion. European Journal of Phycology, 32: 403-416, 1997 (IF= 1.623).

Šimek, K., Hartman, P., Nedoma, J., Pernthaler, J., Springmann, D., Vrba, J., Psenner, R. Community structure, picoplankton grazing and zooplankton control of heterotrophic nanoflagellates in a eutrophic reservoir during the summer phytoplankton maximum. Aquatic Microbial Ecology, 12: 49-63, 1997 (IF= 1.474).

Šimek, K., Vrba, J., Pernthaler, J., Posch, T., Hartman, P., Nedoma, J., Psenner, R. Morphological and compositional shifts in an experimental bacterial community influenced by protists with contrasting feeding modes. Applied and Environmental Microbiology, 63: 587-595, 1997 (IF= 3.336).

Vrba, J., Nedoma, J., Filandr, P. Resolving complex saturation kinetics: a potential tool in interpretation of extracellular β‑N-acetylhexosaminidase data from natural freshwaters. In: Muzzarelli, R.A.A. (ed): Chitin enzymology, Vol. 2. Atec Edizioni, 303–311, 1996 (no IF).

Vrba, J., Filandr, P., Nedoma, J., Šimek, K. Different sources of extracellular β‑N-acetylhexos-aminidase-like activities in freshwaters. In: Muzzarelli, R.A.A. (ed): Chitin enzymology, Vol. 2. Atec Edizioni, 293–301, 1996 (no IF).

Šimek, K., Bobková, J., Macek, M., Nedoma, J. Ciliate grazing on picoplankton in a eutrophic reservoir during the summer phytoplankton maximum: A study at the species and community level. Limnology and Oceanography, 40: 1077-1090, 1995 (IF= 2.389).

Vrba, J., Vyhnálek, V., Hejzlar, J., Nedoma, J. Comparison of phosphorus deficiency indices during a spring phytoplankton bloom in a eutrophic reservoir. Freshwater Biology, 33: 73-81, 1995 (IF= 1.351).

Nedoma, J., Vrba, J., Hejzlar, J., Šimek, K., Straškrabová, V. N-acetylglucosamine dynamics in freshwater environments: Concentration of amino sugars, extracellular enzyme activities, and microbial uptake. Limnology and Oceanography, 39: 1088-1100, 1994 (IF= 2.151).

Vyhnálek, V., Hejzlar, J., Nedoma, J., Vrba, J. Importance of the river inflow for the spring development of plankton in Římov Reservoir (Czechoslovakia). Ergebnisse der Limnologie. Archiv für Hydrobiologie, Beiheft, 40: 51-56, 1994 (no IF).

Nedoma,J., Porcalová,P., Komárková,J., Vyhnálek,V. A seasonal study of phosphorus deficiency in a eutrophic reservoir. Freshwater Biology, 30: 369-376, 1993 (IF= 1.371).

Vrba. J., Šimek, K., Nedoma, J., Hartman, P. 4-methylumbelliferyl-beta-N-acetylglucosaminide hydrolysis by a high-affinity enzyme, a putative marker of protozoan bacterivory. Applied and Environmental Microbiology, 59: 3091-3101, 1993 (IF= 3.128).

Vyhnálek, V., Seďa, J., Nedoma, J. Fate of the spring phytoplankton bloom in the Římov Reservoir (Czechoslovakia): grazing, lysis and sedimentation. Verh. Internat. Verein. Limnol. 25: 1192-1195, 1993 (no IF).

Nedoma,J., Porcalová,P., Komárková,J., Vyhnálek,V. Phosphorus Deficiency Diagnostics in the Eutrophic Římov Reservoir. Water Science and Technology, 28: 75-84, 1993 (IF= 0.573).

Vrba, J., Nedoma, J., Šimek, K., Seďa, J. Microbial decomposition of polymer organic-matter related to plankton development in a reservoir - activity of alpha-glucosidase, beta-glucosidase, and beta-N-acetylglucosaminidase and uptake of N-acetylglucosamine. Archiv für Hydrobiologie, 126: 193-211, 1992 (IF= 1.367).

Dorofeeva, N.A.,Shelkovnikov, S.A., Starshinova, L.A., Danilov, A.F., Nedoma, J., Tuček, S. Quest for agonist and antagonist selectivity at muscarinic receptors in guinea-pig smooth muscles and cardiac atria. Naunyn-Schmiedebergs Archives of Pharmacology, 346: 383-390, 1992 (IF= 2.200).

Tuček, S., Musílková, J., Nedoma, J., Proška, J., Shelkovnikov, S., Vorlíček, J. Positive cooperativity in the binding of alcuronium and N-methylscopolamine to muscarinic acetylcholine-receptors. Molecular Pharmacology, 38: 674-680, 1990 (IF= 5.428).

Danilov, A.F., Nedoma, J.J., Tuček, S.F., Šelkovnikov, S.A. (): O regionalnoj geterogennosti muskarinovych cholinoreceptorov. Doklady Akademii Nauk USSR 304: 749-752, 1989 (IF= 0.194).

Nedoma, J., Tuček, S., Shelkovnikov, S., Danilov, A. Allosteric effects of gallamine and alcuronium on muscarinic receptors. In: Synaptic transmitters and receptors (Ed: S.Tuček), Academia, Praha, pp. 108-112, 1987 (no IF).

Nedoma, J., Slavíková, J., Tuček, S. Muscarinic acetylcholine-receptors in the heart of rats before and after birth. Pflügers Archiv - European Journal of Physiology, 406: 45-50, 1986 (IF= 2.529).

Nedoma, J., Tuček, S., Danilov, A.F., Shelkovnikov, S.A. Stabilization of antagonist binding to cardiac muscarinic acetylcholine-receptors by gallamine and other neuromuscular blocking-drugs. Journal of Pharmacology ond Experimental Therapeutics, 236: 219-223, 1986 (IF= 3.051).

Nedoma, J., Dorofeeva, N.A., Tuček, S., Shelkovnikov, S.A., Danilov, A.F. Interaction of the neuromuscular blocking-drugs alcuronium, decamethonium, gallamine, pancuronium, ritebronium, tercuronium and d-tubocurarine with muscarinic acetylcholine-receptors in the heart and ileum. Naunyn-Schmiedebergs Archives of Pharmacology, 329: 176-181, 1985 (IF= 2.200).

Janský, L., Haddad, G., Kahlerová, Z., Nedoma, J. Effect of external factors on hibernation of golden-hamsters. Journal of Comparative Physiology, 154: 427-433, 1984 (IF= 1.323).

Janský, L., Kahlerová, Z., Nedoma, J., Andrews, J.F. Humoral control of hibernation in golden hamsters. In: Survival in the cold: hibernation and other adaptions (Eds: Musacchia and Jánský), Elsevier, North Holland, pp.13-32, 1981 (no IF).