BioSilico4

BioSilicoList

A comprehensive list of available in silico tools for genetics and genomics

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Tools for Literature Analysis

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PubMed http://www.ncbi.nlm.nih.gov/pubmed/

PubMed Central http://www.pubmedcentral.nih.gov/

Google Scholar http://scholar.google.be/schhp?hl=en&tab=ws

GoPubMed http://www.gopubmed.org/

PubCrawler http://pubcrawler.gen.tcd.ie/

citeulike http://www.citeulike.org/

mendeley http://www.mendeley.com/

Google patents http://www.google.com/patents

Scirus http://www.scirus.com/

FreePatentsOnline http://www.freepatentsonline.com/

BLAST in patents http://www.patentlens.net/sequence/blast/blast.html

espacenet http://ep.espacenet.com/advancedSearch?locale=en_EP

SCImago Journal & Country Rank http://www.scimagojr.com/

etBlast http://invention.swmed.edu/etblast/etblast.shtml

Deja vu http://spore.swmed.edu/dejavu/duplicate/

Nature Precedings http://precedings.nature.com/

PubGene http://www.pubgene.org/

HubMed http://www.hubmed.org/

PubMed Assistant http://metnet.vrac.iastate.edu/browser/

Journal Author Name Estimator http://biosemantics.org/jane/

BioText Search Engine http://biosearch.berkeley.edu/

H index calculator http://insitu.lri.fr/~roussel/projects/scholarindex/index.cgi

H index calculator http://quadsearch.csd.auth.gr/index.php?lan=1&s=2

PubMed-Citeulike script http://userscripts.org/scripts/show/2478

PublicationsList.org http://publicationslist.org/index.html

Journals in Bioinformatics http://www.bioinformatics.org/wiki/Journals

Protocol Online http://www.protocol-online.org/

Nature Protocols http://www.nature.com/nprot/index.html

WolframAlpha http://www65.wolframalpha.com/

Google Squared http://www.google.com/squared/

eigenfactor.org http://www.eigenfactor.org/

PubNet http://pubnet.gersteinlab.org/

TagCrowd http://www.tagcrowd.com/

Tag Cloud Generator http://www.tagcloud-generator.com/generator.php#anker

is.gd URL shortener http://is.gd/

Distribution of Impact Factors in pdf

Meta-Analyst http://tuftscaes.org/meta_analyst/index.html

Comparison of journals http://sites.google.com/site/neurocienciaspanam/journals-1

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Extended lists of servers/programs

Bioinformatics Links Directory http://bioinformatics.ca/links_directory

Genetic analysis programs http://linkage.rockefeller.edu/soft/

hum-molgen.org: bioinformatic tools http://hum-molgen.org/bioinformatics/

BioCatalogue http://www.biocatalogue.org/

BioInformatics Resource Inventory (B.I.R.I.) http://edelman.dia.fi.upm.es/biri/

BMC Databases -Genetics http://databases.biomedcentral.com/browsesubject/?sub_id=1007

tools at bioinformatics.org http://www.bioinformatics.org/softwaremap/?form_cat=2

NAR web server 2009 http://nar.oxfordjournals.org/content/vol37/suppl_2/index.dtl

NAR database 2009 http://nar.oxfordjournals.org/content/vol37/suppl_1/index.dtl

NAR web server 2008 http://nar.oxfordjournals.org/content/vol36/suppl_2/index.dtl

NAR database 2008 http://nar.oxfordjournals.org/content/vol36/suppl_1/index.dtl

NAR web server 2007 http://nar.oxfordjournals.org/content/vol35/suppl_2/index.dtl

NAR database 2007 http://nar.oxfordjournals.org/content/vol35/suppl_1/index.dtl

OpenHelix Search http://openhelix.eu/index.shtml

Gene Quantification http://www.gene-quantification.info/

Primer design http://www.humgen.nl/primer_design.html

Microarray programs http://engr.smu.edu/~mfonten/research/MAsoftware.html

Genetic variation databases http://www.humgen.nl/SNP_databases.html

Mutalyzer-Sequence variant nomenclature check http://www.lovd.nl/mutalyzer/1.0.1/

List of Biomedical Text Mining Tools http://arrowsmith.psych.uic.edu/arrowsmith_uic/tools.html

SNPAcquisition http://variome.kobic.re.kr/SNPatWEB/Wiki.jsp?page=SNPAcquisition

Tools for Next Generation Sequencing http://www.oxfordjournals.org/our_journals/bioinformatics/nextgenerationsequencing.html

Open Bioinformatics Foundation http://www.open-bio.org/wiki/Main_Page

Sequence Manipulation Suite http://www.bioinformatics.org/sms2/

Blogs-Bioinformatics http://blogs.scientifik.info/bioinformatics/?p=66

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Bio-Programming

bioJava http://biojava.org/

bioPerl http://www.bioperl.org/

bioPython http://biopython.org/

BioPHP http://www.biophp.org/

BioC++ http://biocpp.sourceforge.net/

Bio++ http://162.38.181.25/BioPP/

BioSQL http://biosql.org/wiki/Main_Page

R environment www.r-project.org

Rpad http://www.rpad.org/Rpad/

R Commander http://socserv.mcmaster.ca/jfox/Misc/Rcmdr

R Reference Card http://cran.r-project.org/doc/contrib/Short-refcard.pdf

Biotool2Web http://www.imib.med.uni-rostock.de/biotoolwww/biotool2web/index.html

Programming Languages Comparison http://www.ohloh.net/languages/compare