Research Interests

Online analysis tools

G E N O M I C S


B l a s t

NCBI
MyBlast *
VecScreen
AfterGenBank *
BLAT Search Genome
NAGRP Blast Server
The PigEST resource v. 1.0
PEDE: Pig Expression Data Explorer
Pig Expressed Sequence Tags Database

R e a d/ c o n v e r t  S e q u e n c e
Reverse Complement
BCM Search Launcher
Readseq version 2.1.22

P r i m e r
Primer3
Oligo.net
NetPrimer
Primo Oligo 1.0
Primo 3.4 - Chang Bioscience

E x o n - I n t r o n B o u n d a r y
NetGene2 Server
HMMgene (v. 1.1)

C h r o m o s o m e, M a p p i n g & Q T L s
ArkDB
Crimap
QTLexpress
IMpRH mapping
Mapping function
Crimap document
Pig QTL database
Genome 2: mapping

Genetic Power calculator
Vector maps and sequences
Porcine Genome Physical Mapping Project
A Database of Genetic Analysis Software
Comparative Mapping human vs pig chromosomes


P r o m o t e r
TSSG
TSSW
ConSite
PromoSer
Tfsitescan
TRANSFAC
TFSEARCH
McPromoter 006
Practical exercise
PROMO home page
WWW Promoter Scan
Promoter 2.0 Prediction Server
Regulation element prediction
FPROM / Human promoter prediction
Genomatix: Understanding gene regulation
DBTSS: Data Base of Transcription Start Sites
Transcriptional Regulatory Element Database
Transcriptional Regulatory Element Database
TRES Transcription Regulatory Element Search
Statistical Motif Analysis in Promoter or Upstream Gene Sequences

R e s t r i c t i o n  D i g e s t i o n
SNP3d
Rebase
Webcutter 2.0

H a r d y - W e i n b e r g
Calculation of Chi-square test for deviation from Hardy-Weinberg equilibrium
Hardy-Weinberg 1 XLS
Hardy-Weinberg equilibrium calculator including analysis for ascertainment bias
Genetic Power Calculator
Biology Calculator

Creation of RNAi and slicing DNA by the RNAi
siDRM
BIOPREDsi
AsiDesigner
siRNA design
siDESIGN Center
SDIR:Design of siRNA
 
P R O T E O M I C S


P R I M A R Y  S T R U C T U R E

T r a n s l a t i o n f r o m  m R  N  A

Translate tool
ORF Finder (Open Reading Frame Finder)
ProtMod password:dokhoa, gmail.com

M o l e c u l a r  W e i g h t
ProtParam tool
Composition/Molecular Weight Calculation

D o m a i n
SMART
ProSite
InterProScan Sequence Search
COILS - Prediction of Coiled Coil Regions in Proteins
TMpred - Prediction of Transmembrane Regions and Orientation

D i s u l f i d e  B o n d
Prediction of Cys-Cys linkages in proteins
DiANNA 1.1 web server
Cystein disulfide bonding state prediction

S i g n a l  P e p t i d e
Phobius *
SignalP 3.0 Server
Signal peptide prediction
PeptideMass

G l y c o s y l a t i o n  S i t e s
NetNGlyc 1.0 Server: N-Glycosylation sites
NetOGlyc 3.1 Server: O-Glycosylation sites
NetCGlyc 1.0 Server: C-mannosylation sites

S u b c e l l u l a r  L o c a t i o n
TargetP 1.1 Server

P h y l o g e n y
MEGA4
Phylogeny Program
PALM:
Phylogenetic reconstruction by Automatic Likelihood Model

D a t a  B a n k
RCSB PDP Protein data bank
exPASy tools

S E C O N D A R Y  S T R U C T U R E
SOSUI
SABLE
Quick2D
CPHModels Server *

T E R T I A R Y  S T R U C T U R E

Phyre
UbiPred
WHAT IF *
pcons.net
DeepView
3D-PSSM
3D-JIGSAW
Bio-Soft-Net
Uni Hamburg
PredictProtein
SWISS-MODEL: password 735f, gmail.com
POLYVIEW-3D


Q U A T E R N A R Y  S T R U C T U R E
Quaternary Structure Predictor

Automated homology modeling program
ESyPred3D
SVMtop Server 1.0 *


M U L T I P L E  L I N K S/ A L I G N M E N T

Wise2
Mulan
dcode
Multalin
T-Coffee
Softberry
PSIPRED
http://www.ebi.ac.uk/soaplab/
Cell-PLoc
Pcons.net
ClustalW2
DNA Station
ECR browser
On line analysis tools
BCM Search Launcher
Online Chemical Tools
PBIL LYON-GERLAND
Alignment (DNASIS online)
Tools for multiple alignments
Multiple Sequence Alignment
Multiple Alignment Workshop (MAW)
Berkeley Drosophila Genome Project
Regulatory Sequence Analysis Tools
Molecular Biology Freeware for Windows
Gene and protein analysis programs and databases

D A TA B A S E

Protein Data Base (PDB)
Mouse Genome Database
imaGenes - RZPD Nachfolger
NCBI Human-Mouse Homology
GeneCards (Weizmann Institute)
TIGR Databases (Venter institute)
The GDB Human Genome Database
Animal Genome Research Program
SCOP: Structural Classification of Proteins
U.S. Livestock Species Genome Projects databases
ICCARE - Interspecific Comparative Clustering and Annotation for EST
  •  
  • P A T H W A Y S



    MI C R O S C O P


    Hemocytometer Cell Count Calculator
    Experimental Biosciences
    P R O T O C O L S


    M o l e c u l a r  B i o l o g y
    molecularstation.com
    protocol-online.org
    RNeasy Mini Kit
    MACHEREY-NAGEL
    H e m o l y t i c  C o m p l e m e n t  A c t i v i t y
    CH50 (Sigma)
    AH50


    S a n d w i c h  E L I S A


    Complement antibodies
    Extractantigen.com
    Biolegend.com
    Cellsciences.com
    Hycult biotechnology
    rockland-inc.com
    piercenet.com
    biocompare.com
    antikoerper-online.de
    antibodyshop.dk
    genetex.com
    acris-antibodies.com
    novusbio.com
    ptglab.com
    abfrontier.com
    usbio.net

    ELISA Kit
    genwaybio.com
    clinprointl.com
    merckbiosciences.co.uk
    research.cm.utexas.edu
    sigmaaldrich.com
    cabri.org
    bethyl.com
    millipore.com
    abcam.com

    Antibody dilution buffers
    ihcworld.com

    Genomes
    genomesonline.org

    A N I M AL  B R E E D I N G

    Software in animal breeding



    O T H E R S


    GeneMatics

    Sequence Converter
    Reverse complement
    Screen for vector sequences
    Screen for protein motifs in sequences
    Sequence Editor: Convert DNA and RNA sequences


    C O M P U T E R


    Photoshop Express: store up 2GB
    URL: http://animalbiosciences.photoshop.com
    zotero.org: reference
    wikiupload.com: upload file up to 5GB
    fotokasten.de: calender online
    Statistical Softwares
    Online statistics
    Download document pdf

    Split and Merge PDF
    Go4Convert
    Sciweavers
    Foxyutils


    Č
    Ċ
    ď
    Do Vo Anh Khoa,
    Jan 5, 2010, 7:37 AM
    Ċ
    ď
    Do Vo Anh Khoa,
    Nov 10, 2008, 5:14 AM
    Ĉ
    ď
    HWE.xls
    (17k)
    Do Vo Anh Khoa,
    Dec 5, 2010, 11:07 PM
    Ċ
    ď
    Do Vo Anh Khoa,
    Jan 5, 2010, 7:37 AM
    Comments