Paper

Klinsawat W, Uthaipaisanwong P, Jenjaroenpun P, Sripiboon S, Wongsurawat T*, Kusonmano K*. Microbiome variations among age classes and diets of captive Asian elephants (Elephas maximus) in Thailand using full-length 16S rRNA nanopore sequencing. Scientific Reports. 2023. 13(1):17685. 

Woraruthai T, Supawatkorn C, Uthaipaisanwong P, Kusonmano K, Wongsurawat T, Jenjaroenpun P, Chaiyen P, Wongnate T. Isolation and characterization of Enterococcus faecalis isolate VT-H1: A highly efficient hydrogen-producing bacterium from palm oil mill effluent (POME). International Journal of Hydrogen Energy, 2023. 

Tirapanampai C, Intasian P, Uthaipaisanwong P, Kusonmano K, Weeranoppanant N, Chaiyen P, Wongnate T. Metal additives for boosting hydrogen production in anaerobic fermentation: Focus on the change of gene expression and cost analysis. Journal of Cleaner Production, 2023. 414:137609.

Pongsopon M, Woraruthai T, Anuwan P, Amawatjana T, Tirapanampai C, Prombun P, Kusonmano K, Weeranoppanant N, Chaiyen P, Wongnate T. Anaerobic co-digestion of yard waste, food waste, and pig slurry in a batch experiment: an investigation on methane potential, performance, and microbial community. Bioresource Technology Reports, 2023. 21:101364.

Sonthiphand P, Kraidech S, Polart S, Chotpantarat S, Kusonmano K, Uthaipaisanwong P, Rangsiwutisak C, Luepromchai E. Arsenic speciation, the abundance of arsenite-oxidizing bacteria and microbial community structures in groundwater, surface water, and soil from a gold mine. Journal of Environmental Science and Health. 2021 May 26:1-17.

Khoiri AN, Cheevadhanarak S, Jirakkakul J, Dulsawat S, Prommeenate P, Tachaleat A, Kusonmano K, Wattanachaisaereekul S, Sutheeworapong S. Comparative Metagenomics Reveals Microbial Signatures of Sugarcane Phyllosphere in Organic Management. Frontiers in Microbiology. 2021. 12:623799.

Sonthiphand P, Rattanaroongrot P, Mek-yong K, Kusonmano K, Rangsiwutisak C, Uthaipaisanwong P, Chotpantarat S, Termsaithong T. Microbial community structure in aquifers associated with arsenic: analysis of 16S rRNA and arsenite oxidase genes. PeerJ. 2021. 9:e10653.

Puengrang P, Suraraksa B, Prommeenate P, Boonapatcharoen N, Cheevadhanarak S, Tanticharoen M, Kusonmano K*. Diverse Microbial Community Profiles of Propionate-Degrading Cultures Derived from Different Sludge Sources of Anaerobic Wastewater Treatment Plants. Microorganisms. 2020 Feb 18;8(2). pii: E277.

Intarajak T, Udomchaiprasertkul W, Bunyoo C, Yimnoon J, Soonklang K, Wiriyaukaradecha K, Lamlertthon W, Sricharunrat T, Chaiwiriyawong W, Siriphongpreeda B, Sutheeworapong S, Kusonmano K, Kittichotirat W, Thammarongtham C, Jenjaroenpun P, Wongsurawat T, Nookaew I, Auewarakul C, Cheevadhanarak S. Genetic Aberration Analysis in Thai Colorectal Adenoma and Early-Stage Adenocarcinoma Patients by Whole-Exome Sequencing. Cancer. 2019 Jul 12;11(7). pii: E977.

Holst F, Werner HMJ, Mjøs S, Hoivik EA, Kusonmano K, Wik E, Berg A, Birkeland E, Gibson WJ, Halle MK, Trovik J, Cherniack AD, Kalland KH, Mills GB, Singer CF, Krakstad C, Beroukhim R and Salvesen HB. PIK3CAAmplification Associates with Aggressive Phenotype but Not Markers of AKT-MTOR Signaling in Endometrial Carcinoma. Clinical Cancer Research. 2019;25(1):334-345.  

Kusonmano K*, Halle MK, Wik E, Hoivik EA, Krakstad C, Mauland KK, Tangen IL, Berg A, Werner HMJ, Trovik J, Øyan AM, Kalland KH, Jonassen I, Salvesen HB, Petersen K. Identification of highly connected and differentially expressed gene subnetworks in metastasizing endometrial cancer. PLoS One. 2018;13(11):e0206665.

Halle MK, Tangen IL, Berg HF, Hoivik EA, Mauland KK, Kusonmano K, Berg A, Hurtado A, Kalland KH, Øyan AM, Stefansson I, Vintermyr OK, Werner HM, Haldorsen IS, Trovik J, Salvesen HB, Krakstad C. HER2 expression patterns in paired primary and metastatic endometrial cancer lesions. British Journal of Cancer. 2018;118(3):378-387.

Mjos S, Werner HMJ, Birkeland E, Holst F, Berg A, Halle MK, Tangen IL, Kusonmano K, Mauland KK, Oyan AM, Kalland KH, Lewis AE, Mills GB, Krakstad C, Trovik J, Salvesen HB and Hoivik EA. PIK3CA exon9 mutations associate with reduced survival, and are highly concordant between matching primary tumors and metastases in endometrial cancer. Scientific Reports. 2017;7(1):10240.

Halle MK, Ojesina AI, Engerud H, Woie K, Tangen IL, Holst F, Høivik E, Kusonmano K, Haldorsen IS, Vintermyr OK, Trovik J, Bertelsen BI, Salvesen HB, Krakstad C. Clinicopathologic and molecular markers in cervical carcinoma: a prospective cohort study. American Journal of Obstetrics and Gynecology. 2017;217(4):432.e1-432.e17.

Mauland KK, Wik E, Hoivik EA, Kusonmano K, Halle MK, Berg A, Haugland HK, Øyan AM, Kalland KH, Stefansson IM, Akslen LA, Krakstad C, Trovik J, Werner HM, Salvesen HB. Aneuploidy related transcriptional changes in endometrial cancer link low expression of chromosome 15q genes to poor survival. Oncotarget. 2017;8(6):9696-9707.

Gibson WJ, Hoivik EA, Halle MK, Taylor-Weiner A, Cherniack AD, Berg A, Holst F, Zack TI, Werner HM, Staby KM, Rosenberg M, Stefansson IM, Kusonmano K, Chevalier A, Mauland KK, Trovik J, Krakstad C, Giannakis M, Hodis E, Woie K, Bjorge L, Vintermyr OK, Wala JA, Lawrence MS, Getz G, Carter SL, Beroukhim R, Salvesen HB. The genomic landscape and evolution of endometrial carcinoma progression and abdominopelvic metastasis. Nature Genetics. 2016;48(8):848-55.

Krakstad C, Tangen IL, Hoivik EA, Halle MK, Berg A, Werner HM, Ræder MB, Kusonmano K, Zou JX, Øyan AM, Stefansson I, Trovik J, Kalland KH, Chen HW, Salvesen HB. ATAD2 overexpression links to enrichment of B-MYB-translational signatures and development of aggressive endometrial carcinoma. Oncotarget. 2015;6(29):28440-52.

Stefansson IM, Raeder M, Wik E, Mannelqvist M, Kusonmano K, Knutsvik G, Haldorsen I, Trovik J, Øyan AM, Kalland KH, Staff AC, Salvesen HB, Akslen LA. Increased angiogenesis is associated with a 32gene expression signature and 6p21 amplification in aggressive endometrial cancer. Oncotarget. 2015; 6(12):10634-45. 

Berg A, Hoivik EA, Mjøs S, Holst F, Werner HM, Tangen IL, Taylor-Weiner A, Gibson WJ, Kusonmano K, Wik E, Trovik J, Halle MK, Oyan AM, Kalland KH, Cherniack AD, Beroukhim R, Stefansson I, Mills GB, Krakstad C and Salvesen HB. Molecular profiling of endometrial carcinoma precursor, primary and metastatic lesions suggests different targets for treatment in obese compared to non-obese patients. Oncotarget. 2015;6(2):1327-39. 

Tangen IL, Werner HM, Berg A, Halle MK, Kusonmano K, Trovik J, Hoivik EA, Mills GB, Krakstad C and Salvesen HB. Loss of progesterone receptor links to high proliferation and increases from primary to metastatic endometrial cancer lesions. European Journal of Cancer. 2014;50(17):3003-10.  

Wik E, Trovik J, Kusonmano K, Birkeland E, Rader MB, Pashtan I, Hoivik EA, Krakstad C, Werner HM, Holst F, Mjøs S, Halle MK, Mannelqvist M, Mauland KK, Oyan AM, Stefansson IM, Petersen K, Simon R, Cherniack A, Kalland KH, Akslen LA and Salvesen HB. Endometrial Carcinoma Recurrence Score (ECARS) validates prospectively to identify aggressive disease and associates with markers for epithelialmesenchymal transition and PI3K alterations. Gynecologic Oncology. 2014;134(3):599-606.  

Engerud H, Tangen IL, Berg A, Kusonmano K, Halle MK, Oyan AM, Kalland KH, Stefansson I, Salvesen HB and Krakstad C. High level of HSF1 associates with aggressive endometrial carcinoma and suggests potential for HSP90 inhibitors. British Journal of Cancer. 2014;111(1):78-84. 

Pagaretea A, Kusonmano K, Petersen K, Trivedic U, Kimmanced SA, Martíneze JM, Wilsond WH, Hehemannf JH, Allend MJ and Sandaa R. Dip in the gene pool: Metagenomic survey of natural coccolithovirus communities. Virology. 2014;466-467:129-37.  

Tangen IL, Krakstad C, Halle MK, Werner HM, Anne M Oyan, Kusonmano K, Petersen K, Kalland KH, Akselen LA, Trovik J, Hurtado A and Salvesen HB. Switch in FOXA1 status associates with endometrial cancer progression. PLoS One. 2014;9(5):e98069.  

Hoivik EA, Kusonmano K, Halle MK, Berg A, Wik E, Werner HM, Petersen K, Oyan AM, Kalland KH, Krakstad C, Trovik J, Widschwendter M and Salvesen HB. Hypomethylation of the CTCFL/BORIS promoter and aberrant expression during endometrial cancer progression suggests a role as an Epi-driver gene. Oncotarget. 2014;5(4):1052-61.

Wik E, Birkeland E, Trovik J, Werner HM, Hoivik EA, Mjos S, Krakstad C, Kusonmano K, Mauland K, Stefansson IM, Holst F, Petersen K, Oyan AM, Simon R, Kalland KH, Ricketts W, Akslen LA and Salvesen HB. High phospho-Stathmin (Serine38) expression identifies aggressive endometrial cancer and suggests an association with PI3K inhibition. Clinical Cancer Research. 2013;19(9):2331-41.  

Krakstad C, Birkeland E, Seidel D, Kusonmano K, Petersen K, Mjøs S, Hoivik EA, Wik E, Halle MK, Oyan AM, Kalland KH, Werner HM, Trovik J and Salvesen HB. High-throughput mutation profiling of primary and metastatic endometrial cancers identifies KRAS, FGFR2 and PIK3CA to be frequently mutated. PLoS One. 2012;7(12):e52795.  

Birkeland E, Wik E, Mjøs S, Hoivik EA, Trovik J, Werner H.M., Kusonmano K, Petersen K, Raeder MB, Holst F, Øyan AM, Kalland KH, Akslen LA, Simon R, Krakstad C and Salvesen HB. KRAS gene amplification and overexpression but not mutation associates with aggressive and metastatic endometrial cancer. British Journal of Cancer. 2014;107(12):1997-2004. 

Werner HM, Berg A, Wik E, Birkeland E, Krakstad C, Kusonmano K, Petersen K, Kalland KH, Oyan AM, Akslen LA, Trovik J and Salvesen HB. ARID1A loss is prevalent in endometrial hyperplasia with atypia and low-grade endometrioid carcinomas. Modern Pathology. 2013;26(3):428-34.  

Mak L, Liggi S, Tan L, Kusonmano K, Rollinger JM, Koutsoukas A, Glen RC and Kirchmair J. Anti-cancer drug development: computational strategies to identify and target proteins involved in cancer metabolism. Current Pharmaceutical Design. 2013;19(4):532-77. Review.  

Cheevadhanarak S, Paithoonrangsarid K, Prommeenate P, Kaewngam W, Musigkain A, Tragoonrung S, Tabata S, Kaneko T, Chaijaruwanich J, Sangsrakru D, Tangphatsornruang S, Chanprasert J, Tongsima S, Kusonmano K, Jeamton W, Dulsawat S, Klanchui A, Vorapreeda T, Chumchua V, Khannapho C, Thammarongtham C, Plengvidhya V, Subudhi S, Hongsthong A, Ruengjitchatchawalya M, Meechai A, Senachak J and Tanticharoen M. Draft genome sequence of Arthrospira platensis C1 (PCC9438). Standards in Genomic Sciences. 2012; 6(1):43-53. 

Mannelqvist M, Stefansson IM, Wik E, Kusonmano K, Raeder MB, Oyan AM, Kalland KH, Moses MA, Salvesen HB and Akslen LA. Lipocalin 2 expression is associated with aggressive features of endometrial cancer. BMC Cancer. 2012;12:169.  

Kusonmano K, Netzer M, Baumgartner C, Dehmer M, Liedl KR, and Graber A. Effects of pooling samples on the performance of classification algorithms: A comparative study. ScientificWorldJournal. 2012;2012:278352. 

He X, Chang S, Zhang J, Zhao Q, Xiang H, Kusonmano K, Yang L, Sun ZS, Yang H and Wang J. MethyCancer: the database of humanDNA methylation and cancer. Nucleic Acids Research. 2008;36(Database issue):D836-41.