Conference

Rajudom N, Panichnumsin P, Prommeeenate P, Cheevadhanarak S and Kusonmano K*. Comparison of Read-Based and Metagenome Assembled Genome-Based Approaches for Characterizing Microbial Taxonomic Profiles in Sulfate-Rich Wastewater Treatment Systems. The 34th Annual Meeting of the Thai Society for Biotechnology and International Conference (TSB2022), November 2022, Bangkok, Thailand. (Oral presentation with the Best oral presentation award, Bioinformatics and Systems Biology session)

Rueangmongkolrat N, Uthaipaisanwong P, Kusonmano K and Sonthiphand P. Microbial community and potential arsenic-transforming microorganisms in agricultural soils. International Conference on Sustainable Environment and Energy 2022 (ICoSEE 2022), November 2022, Songkhla, Thailand. (Oral presentation)

Sitthipunya A, Uthaipaisanwong P, Sinwat N, Kanjanavaikoon K, Cheevadhanarak S and Kusonmano K*. Detecting microbial communities and pathogens in Thai broiler gastrointestinal tracts based on high-throughput sequencing. The 25th International Annual Symposium on Computational Science and Engineering, June 2022, Khon Kaen, Thailand. (Oral presentation with Honorable oral presentation award).

Uthaipaisanwong P, Wongsurawat T, Klinsawat W, Jenjaroenpun P* and Kusonmano K*. Evaluation of taxonomic classification database for microbiome analysis of nanopore full-length 16S rRNA genes. The 25th International Annual Symposium on Computational Science and Engineering, June 2022, Khon Kaen, Thailand. (Poster presentation with Outstanding poster presentation award).

Suksong W, Engsatittanawan S, Kongduan V,Boonapatcharoen N, Prommeenate P, Suraraksa B* and Kusonmano K*. Analysis of microbial communities in various full-scale anaerobic wastewater treatment plants. The 25th International Annual Symposium on Computational Science and Engineering, June 2022, Khon Kaen, Thailand. (Poster presentation with Honorable poster presentation award).

Suksong W, Kongduan V, Inthaklay J, Phalaphol D, Boonapatcharoen N, Kusonmano K*, Suraraksa B*.  Synergistic effect of rumen fluid and enriched fatty acid utilizing consortium for improving methane production from cassava pulp residue. The 9th Microbial Ecology & Water Engineering (MEWE) Specialist Conference of The International Water Association (IWA), October 2021, Delft, The Netherlands. (Poster presentation)

Lipun K, Jurakkakul J, Tachaleat A, Duangfoo T, Cheevadhanarak S, Prommeeenate P*, Kusonmano K*. Alternative Enrichment Cultures for Plant Growth Promoting Microbes from Coffee Plants. The 32nd Annual Meeting of the Thai Society for Biotechnology and International Conference (TSB 2020), November 2020, Bangkok, Thailand. (Poster presentation)

Uthaipaisonwong P, Danwanichwong S, Luangtongkum T, Cheevadhanarak S, Kusonmano K*. Identification of Campylobacter species for poultry-infected samples using V4 hypervariable regions of 16S rRNA gene sequencing. The 32nd Annual Meeting of the Thai Society for Biotechnology and International Conference (TSB 2020), November 2020, Bangkok, Thailand. (Poster presentation)

Uthaipaisonwong P, Puengrang P, Rangsiwutisak C, Prombun P, Sitthipunya A, Rajudom N, Kusonmano K*. Beginner’s guide to microbiome analysis. The 11th International Conference on Computational Systems-Biology and Bioinformatics (CSBio 2020), November 2020, Bangkok, Thailand. (Tutorial)

Tachaleat A, Salaipeth L, Rangsiwutisak C, Jirakkakul J, Dulsawat S, Duangfoo T, Wattanachaisaereekul S, Karjangthimaporn E, Pejaranonda B, Tanchareon S, Prommeenate P, Kusonmano K and Cheevadhanarak S. Prokaryotic Diversity in the Soils of Healthy and Infected Coffee Plants in Thailand. The 30th Annual Meeting of the Thai Society for Biotechnology and International Conference, November 2019, Phuket, Thailand. (Poster presentation)

Uthaipaisonwong P, Srisuk T, Laeman K, Cheevadhanarak S, Kusonmano K*. Evaluation of shotgun metagenomic classification performance via microbial richness and diversity. The 9th International Conference on Computational Systems-Biology and Bioinformatics (CSBio 2018), December 2018, Bangkok, Thailand. (Oral presentation)

Rangsiwutisak C, Cheevadhanarak S, Kusonmano K*. Hypervariable regions assessment for 16S rRNA gene-based metagenomic analysis in activated sludge and anaerobic digestion. The 30th Annual Meeting of the Thai Society for Biotechnology and International Conference, November 2018, Bangkok, Thailand. (Proceedings and oral presentation)

Laeman K, Uthaipaisonwong P, Rangsiwutisak C, Cheevadhanarak S, Kusonmano K*. SBI Metagenomics: An integrated database and visualization platform for metagenomic studies. The 30th Annual Meeting of the Thai Society for Biotechnology and International Conference, November 2018, Bangkok, Thailand. (Poster presentation) 

Kusonmano K*, Halle MK, Wik E, Hoivik EA, Krakstad C, Mauland KK, Tangen IL, Berg A, Werner HMJ, Trovik J, Øyan AM, Kalland KH, Jonassen I, Salvesen HB, Petersen K. A novel approach to identify highly connected and differentially expressed subnetworks in metastasizing endometrial cancer. Bioinformatics of Genome Regulation and Structure\Systems Biology (BGRS\SB-2018), August 2018, Novosibrisk, Russia. (Oral presentation) 

Kittichotirat W, Khongthon P, Kusonmano K and Cheevadhanarak S. Assessment of somatic single nucleotide variant identification software using simulated whole-genome sequencing data of cancer. Bioinformatics of Genome Regulation and Structure\Systems Biology (BGRS\SB-2018), August 2018, Novosibrisk, Russia. (Oral presentation)

Rattanachan S, Sutheeworapong S, Paenkaew P, Kusonmano K, Thammarongdham C, Vorapreeda T, Srisuk T, Prommeenate P, Cheevadhanaraka S and Wattanachaisaereekulb S. Dual transcriptome analysis of Penicillium sp. and its co-cultivation for investigation of polyketide, phenicin, biosynthesis potential. International Conference of Agriculture and Natural Resources (ANRES 2018), April 2018, Bangkok, Thailand. (Proceedings and Oral presentation)

Charoensri S, Kusonmano K, Kittichotirat W, Sutheeworapong S, Srisuk T, Thammarongtham C and Cheevadhanarak S. Identification of CRISPR-Cas Systems of Arthrospira platensis C1 using Bioinformatics Approach. The 13th Asian Congress on Biotechnology, July 2017, Khon Kaen, Thailand. (Proceedings and oral presentation)

Chetruengchai W, Suraraksa B, Prommeenate P, Kusonmano K, Cheevadhanarak S and Kittichotirat W. Identification of Microbiomes in Anaerobic Wastewater Treatment Sludge Fed by Different Volatile Acids using 16S rRNA Metagenomics Approach. The 13th Asian Congress on Biotechnology, July 2017, Khon Kaen, Thailand. (Proceedings and oral presentation)

Paenkaew P, Sutheeworapong S, Chaijaruwanich J, Thammarongtham C, Kusonmano K, Cheevadhanarak S and Prachumwat A. Metatranscriptome Analysis Revealed Putative Causative Agents of Aggregated Transformed Microvilli (ATM) in Penaeus vannamei. The 13th Asian Congress on Biotechnology, July 2017, Khon Kaen, Thailand. (Proceedings and oral presentation)

Khongthon P, Lamlertthon W, Kusonmano K, Cheevadhanarak S and Kittichotirat W. Assessment of Software for Somatic Single Nucleotide Variant Identification using Simulated Whole-Genome Sequencing Data of Cancer, The 13th Asian Congress on Biotechnology, July 2017, Khon Kaen, Thailand. (Proceedings and oral presentation)

Sae-Ong T, Prommeenate P, Kusonmano K, Senachak J, Cheevadhanarak S, Sutheeworapong S. Development of RNA-seq Pipeline for CRC Subtype Classification. National Genetics Conference 2017, Integrative Genetics: From Discovery to Innovation, 2017, Bangkok, Thailand. (Poster presentation)

Dulsawat S, Charoensri S, Kaewngam W, Kusonmano K, Prommeenate P, Kittichotirat W, Thammarongtham C, Cheevadhanarak S. An adaptive immune system of Arthrospira platensis C1 as revealed by its CRISPR spacers. The 29th Annual Meeting of the Thai Society for Biotechnology and International Conference, November 2017, Bangkok, Thailand. (Poster presentation)

Sae-Ong T, Prommeenateb P, Senachakb J, Kusonmano K, Cheevadhanarak S and Sutheeworapong S. Molecular Classification of Colorectal Cancer Subtype based on Isoform Expression using RNA-seq Data. The 5th International Biochemistry and Molecular Biology Conference, 2016, Songkhla, Thailand.

Kusonmano K, Halle MK, Wik E, Hoivik EA, Salvesen HB and Petersen K. A novel approach to identify highly connected and differentially expressed subnetworks reveal underlying biological processes in endometrial cancer metastasis. 23nd Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), 2015, Dublin, Ireland. (Selected oral presentation from a poster presentation)

Mauland KK, Kusonmano K, Wik E, Halle MK, Trovik J, Haugland HK, Oyan AM, Salvesen HB. Aneuploidy predicts aggressiveness and poor prognosis in endometrial cancer, and is reflected in a 9-gene signature. The 106th Annual Meeting of the American Association for Cancer Research, April 2015, Philadelphia, USA; Cancer Research 2015;75(15 Suppl):Abstract nr 3864. 

Kusonmano K, Halle MK, Wik E, Hoivik EA, Salvesen HB and Petersen K. Identification of differentially expressed gene modules from protein-protein interactions and transcriptional correlations in primary and metastatic endometrial lesions. 22nd Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), 2014, Boston, USA. (Poster presentation) 

Kusonmano K, Halle MK, Wik E, Hoivik EA, Salvesen HB and Petersen K. Identification of differentially expressed gene modules from protein-protein interactions and transcriptional correlations in primary and metastatic endometrial lesions. The Society for Bioinformatics in Northern Europe (SocBiN), 2014, Oslo, Norway. (Oral presentation) 

Engerud H, Tangen IL, Berg A, Kusonmano K, Stefansson I, Salvesen HB and Krakstad C. High level of nuclear heat-shock factor 1 is associated with aggressive disease and suggests targets for therapy in endometrial carcinoma. The 105th Annual Meeting of the American Association for Cancer Research, April 2014, San Diego, USA; Cancer Research 2014;74(19 Suppl):Abstract nr 4731.

Krakstad C, Tangen IL, Raeder MB, Hoivik EA, Kusonmano K, Zou JX, Øyan AM, Trovik J, Chen H, Kalland KH, Salvesen HB. ATAD2 overexpression indentifies aggressive endometrial carcinomas. The 105th Annual Meeting of the American Association for Cancer Research, April 2014, San Diego, USA; Cancer Res 2014;74(19 Suppl):Abstract nr 2875.

Kusonmano K, Halle MK, Wik E, Hoivik EA, Salvesen HB and Petersen K. Identification of subnetworks from protein-protein interactions and transcriptional correlations in primary and metastatic endometrial lesions. The 2nd Centre for Cancer Biomarkers (CCBIO) Symposium, March 2014, Bergen, Norway. (Poster presentation) 

Kusonmano K, Wik E, Salvesen HB and Petersen K. Identification of metastasis subnetworks in endometrial cancer. ECCB’12, 11th European Conference on Computational Biology, 2012, Basel, Switzerland. (Poster presentation) 

Kusonmano K, Wik E, Salvesen H.B. and Petersen K. An ensemble-based feature selection algorithm for identifying candidate metastasis marker genes in endometrial cancer. The Society for Bioinformatics in Northern Europe (SocBiN), 2012, Stockholm, Sweden. (Poster presentation) 

Kusonmano K, Netzer M, Pfeifer B, Baumgartner C, Liedl KR, and Graber A. Evaluation of the impact of dataset characteristics for classification problems in biological applications. ICBB 2009: International Conference on Bioinformatics and Biomedicine, 2009, Venice, Italy. (Proceedings and oral presentation)

Netzer M, Millonig G, Pfeifer B, Kusonmano K, Praun S, Villinger J, Vogel W, and Baumgartner C. Stacked Feature Selection in Liver Disease using IMR-MS analysis. DEXA09 – 20th International Workshop on Database and Expert Systems Application, 2009, Linz, Austria. (Proceedings and oral presentation)

Kusonmano K, Tongsima S, Suwan S, Kaewngam W, Plengvidhya V, Paithoonrangsarid K. and Cheevadhanarak S. A Workflow Engine for Manual Annotation of de novo Microbial Genome. The 18th Annual Meeting of The Thai Society for Biotechnology (TSB), 2006, Bangkok, Thailand. (Poster presentation) 

Denwattana N, Kusonmano K and Dokeaw A. Mining Frequent Itemsets using FIL-Tree. The 1st Thailand Computer ScienceConference (ThCSC), 2004, Bangkok, Thailand. (Proceedings and oral presentation)