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Steps on how to do complex analyses in IMG
Alternative to Gene Conserved Neighborhood
Alternative to Gene Conserved Neighborhood
The gene details page tool "Show neighborhood regions with the same top COG hit (via top homolog)" has a strict filtering of hits and it may not show any hits. See FAQ section: "Gene Conserved Neighborhood" for the filtering rules.
How to find the Gene Neighborhood without filtering.
How to find the Gene Neighborhood without filtering.
Steps
On a Gene detail page scroll down to the bottom of the page and run "Top Homolog".
On the results page add genes to the Gene Cart.
In the Gene Cart select genes to plot.
In the Gene Neighborhood tab run "Show Neighborhoods".
Step 1 can be replaced with IMG's "All Isolate Genome Blast". Menu -> Find Genes -> BLAST -> All Genomes*
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