Data Conversion and Analysis
Connecting instrument data to EDD jupyter notebook supports transfer of high-quality data for Learn activities and Basic Stats and Graphs Tool (jupyter notebook) that calculate the reproducibility and accuracy of the data in the EDD will provide rapid assessment of data quality to aid efforts across JBEI and the ABF. The information from the notebooks will help the Test team assess the success of their assays and help the Learn team prioritize which datasets to use for subsequent DBTL cycles. It will also help individual researchers identify problems in their experiment or workflow. When combined, this set of tools can effectively store, visualize, and leverage synthetic biology data to enable predictive bioengineering and effective actionable items for the next DBTL cycle.
Instrument to EDD User Meeting Video Recording (April 5, 2021) (video and slides)
Agilent HPLC
Instrument model: 1260 infinity
Software Version: Open lab CDS Chemstation Rev.C.01.05 (35)
Application: Metabolite quantification
Protocol: Click here to learn more .
Example Files:
Thermo GC-FID
Instrument model: GCQ
Application:
Protocol: Click here to learn more
Example Files:
Labman
Instrument model:
Application: Solid Dispenser
Protocol: Click here to learn more .
Example Files:
Thermo Gallery Analyzer
Instrument model:
Software Version:
Application:
Google Colab URL link
Protocol: Click here to learn more .
Example Files:
Instrument File
EDD Import File
Status:In Progress
Thermo Dionex 3000 HPLC
Instrument model:
Software Version:
Application: Metabolite quantification
Protocol: Click here to learn more .
Example Files:
EDD Basic Stats and Graphs Notebook analysis
Protocol: Click here to learn more
Example Output Files:
Report
Biomass Monosaccharide Composition Basic Stats and Graphs Notebook
Protocol: Click here to learn more
Tutorial Video
Example Output Files:
Report
Visual:
For more information, please email ese-robotics@lbl.gov