研究業績
研究業績
Link: [ Google Scholar ] [ Research Gate ] [ Research Map ] [ ORCiD ]
※このほか研究室員の過去の研究業績はメンバーから個人のページをご参照ください。
Embedded Files
原著論文
原著論文
2023
2023
Miki Wada, Koichi Ito: The CGA Codon Decoding through tRNAArg(ICG) Supply Governed by Tad2/Tad3 in Saccharomyces cerevisiae. FEBS Journal, (2023). in press, DOI: 10.1111/febs.16760 [Link]
Mengqi Wang, Yimeng Zhao, Yoshiki Hayashi, Koichi Ito, Motoyuki Hattori: Novel Mg2+ binding sites in the cytoplasmic domain of the MgtE Mg2+ channels revealed by X-ray crystal structures, Acta Biochimica et Biophysica Sinica (2023) in press DOI: 10.3724/abbs.2023067 [Link]
Hiroshi Otsuka, Kei Endo, Miki Wada, Koichi Ito: Systematic genetic identification of functional domains on collided di-ribosomes responsible for rescue pathways upon translation arrest in Saccharomyces cerevisiae FEBS Journal, (2023). 21 March 2023 D★OI: 10.1111/FEBS.1678116760 [Link]
Editor’s Choice article from the 02 August 2023 issue
2022
2022
Miki Wada, Koichi Ito: Human ABCE1 exhibits temperature-dependent heterologous co-functionality in S. cerevisiae. FEBS Open Bio, (2022) Jul 6. DOI: 10.1002/2211-5463.13463 [Link]
Xiaoyu Yang, Natsuko I Kobayashi, Yoshiki Hayashi, Koichi Ito, Yoshitaka Moriwaki, Tohru Terada, Kentaro Shimizu, Motoyuki Hattori, Ren Iwata, Hisashi Suzuki, Tomoko M Nakanishi, Keitaro Tanoi: Mutagenesis Analysis of GMN Motif in Arabidopsis thaliana Mg2+ Transporter MRS2-1. Biosci Biotech and Biochem. 86(7), July 2022, Pages 870–874, DOI: 10.1093/bbb/zbac064 [Link]
Tatsuya Niwa ,Koki Nakazawa ,Kensuke Hoshi ,Hisashi Tadakuma, Koichi Ito and Hideki Taguchi: Application of fluorescence correlation spectroscopy to investigate the dynamics of a ribosome-associated trigger factor in Escherichia coli. Frontiers in Molecular Biosciences. DOI: 10.3389/fmolb.2022.891128 [Link]
2021
2021
Fei Jin, Minxuan Sun, Takashi Fujii, Yurika Yamada, Jin Wang, Andrés D Maturana, Miki Wada, Shichen Su, Jinbiao Ma, Hironori Takeda, Tsukasa Kusakizako, Atsuhiro Tomita, Yoshiko Nakada-Nakura, Kehong Liu, Tomoko Uemura, Yayoi Nomura, Norimichi Nomura, Koichi Ito, Osamu Nureki, Keiichi Namba, So Iwata, Ye Yu, Motoyuki Hattori: The structure of MgtE in the absence of magnesium provides new insights into channel gating. PLoS biology, (2021) 19: e3001231 DOI: 10.1371/journal.pbio.3001231 [Link]
2020
2020
Fumihiro HORIE, Kei Endo, and Koichi Ito, Artificial Protein-Responsive Riboswitches Upregulate Non-AUG Translation Initiation in Yeast. ACS Synthetic Biology, (2020) DOI: 10.1021/acssynbio.0c00206 [Link]
2019
2019
Kato T, Kumazaki K, Wada M, Taniguchi R, Nakane T, Yamashita K, Hirata K, Ishitani R, Ito K, Nishizawa T & Nureki O, Crystal structure of plant vacuolar iron transporter VIT1. Nature Plants 5, pages308–315 (2019) [online: Link] [参考: 理学系研究科プレスリリース]
Wada M and Ito K; Misdecoding of Rare CGA Codon by Translation Termination Factors, eRF1/eRF3, Suggests Novel Class of Ribosome Rescue Pathway in S. cerevisiae. FEBS Journal: 286: 788-802 (2019) [Link]
2018
2018
Hayashi H, Nagai R, Abe T, Wada M, Ito K, Takeuchi-Tomita N, Tight interaction of eEF2 in the presence of Stm1 on ribosome. The Journal of Biochemistry 163(3), 177–185 (2018) [Link]
Maruyama T, Imai S, Kusakizako T, Hattori M, Ishitani R, Nureki O, Ito K, Maturana AD, Shimada I, Osawa M. Functional roles of Mg2+ binding sites in ion-dependent gating of a Mg2+ channel, MgtE, revealed by solution NMR. eLife 7:e31596 (2018) [Link]
2017
2017
Miyauchi H, Moriyama S, Kusakizako T, Kumazaki K, Nakane T, Yamashita K, Hirata K, Dohmae N, Nishizawa T, Ito K, Miyaji T, Moriyama Y, Ishitani R, Nureki O, Structural basis for xenobiotic extrusion by eukaryotic MATE transporter. Nature Communications 8 (1), 1633 (2017) [Link][参考: 理学系研究科プレスリリース]
Tomita A, Zhang M, Jin F, Zhuang W, Takeda H, Maruyama T, Osawa M, Hashimoto K, Kawasaki H, Ito K, Dohmae N, Ishitani R, Shimada I, Yan Z, Hattori M, Nureki O. ATP-dependent modulation of MgtE in Mg 2+ homeostasis. Nature Communications 8 (1), 148 (2017) [Link]
2016
2016
Horikawa W, Endo K, Wada M, Ito K, Mutations in the G-domain of Ski7 cause specific dysfunction in non-stop decay. Scientific Reports 6, Article number: 29295 (2016) DOI:10.1038/srep29295 [Link]
Tsuchiya H, Doki S, Takemoto M, Ikuta T, Higuchi T, Fukui K, Usuda Y, Tabuchi E, Nagatoishi S, Tsumoto K, Nishizawa T, Ito K, Dohmae N, Ishitani R, Nureki O., Structural basis for amino acid export by DMT superfamily transporter YddG. Nature 534:417-20 (2016). doi: 10.1038/nature17991. [PubMed]
Kasuya G, Hiraizumi M, Maturana AD, Kumazaki K, Fujiwara Y, Liu K, Nakada-Nakura Y, Iwata S, Tsukada K, Komori T, Uemura S, Goto Y, Nakane T, Takemoto M, Kato HE, Yamashita K, Wada M, Ito K, Ishitani R, Hattori M, Nureki O., Crystal structures of the TRIC trimeric intracellular cation channel orthologues. Cell Res. 26):1288-1301 (2016). doi: 10.1038/cr.2016.140. [Pub Med）
2015
2015
Saito K, Ito K: Genetic analysis of L123 of the tRNA-mimicking eukaryote release factor eRF1, an amino acid residue critical for discrimination of stop codons. Nucleic Acids Research. 43(9).(2015) DOI: 10.1093/nar/gkv376 [PubMed]
Saito K, Horikawa W, Ito K: Inhibiting K63 Polyubiquitination Abolishes No-Go Type Stalled Translation Surveillance in Saccharomyces cerevisiae. PLoS Genetics. 11(4):e1005197. (2015) DOI: 10.1371/journal.pgen.1005197 [PubMed]
Fukuda M, Takeda H, Kato HE, Dok S, Ito K, Maturana AD, Ishitani R, Nureki O: Article: Structural basis for dynamic mechanism of nitrate/nitrite antiport by NarK. Nature Communications. 6:7097 (2015). DOI: 10.1038/ncomms8097 [PubMed][参考: 理学系研究科プレスリリース]
Taniguchi R, Kato KE, Font J, Deshpande CN, Wada M, Ito K, Ishitani R, Jormakka M, Nureki O: Outward-and inward-facing structures of a putative bacterial transition-metal transporter with homology to ferroportin Nature Communications. 10/2015; 6(5). (2015) DOI: 10.1038/ncomms9545 [PubMed]
2014
2014
Wada M, Ito K: A genetic approach for analyzing the co-operative function of the tRNA mimicry complex, eRF1/eRF3, in translation termination on the ribosome. Nucleic Acids Res. 42: 7851-66 (2014) [PubMed]
2013
2013
Ishikawa K, Ito K, Inoue JI, Semba K.: Cell growth control by stable Rbg2/Gir2 complex formation under amino acid starvation. Genes Cells. 18:859-872 (2013) [PubMed]
Li Y, Kim OT, Ito K, Saito K, Suzaki T, Harumoto T.: A Single Amino Acid Substitution Alters Omnipotent eRF1 of Dileptus to Euplotes-type Dualpotent eRF1: Standard Codon Usage May be Advantageous in Raptorial Ciliates. Protist. 164: 440-9 (2013) [PubMed]
Tanaka Y, Hipolito CJ, Maturana AD, Ito K, Kuroda T, Higuchi T, Katoh T, Kato HE, Hattori M, Kumazaki K, Tsukazaki T, Ishitani R, Suga H, Nureki O.: Structural basis for the drug extrusion mechanism by a MATE multidrug transporter. Nature. 496: 247-51 (2013)[PubMed]
2012
2012
Kobayashi K, Saito K, Ishitani R, Ito K, Nureki O.: Structural basis for translation termination by archaeal RF1 and GTP-bound EF1α complex. Nucleic Acids Res. 40: 9319-28 (2012) [PubMed]
2011
2011
Zhou ZP, Shimizu Y, Tadakuma H, Taguchi H, Ito K, Ueda T.: Single molecule imaging of the trans-translation entry process via anchoring of the tagged ribosome. J Biochem. 149:609-618 (2011) [PubMed]
2010
2010
Saito K, Kobayashi K, Wada M, Kikuno I, Takusagawa A, Mochizuki M, Uchiumi T, Ishitani R, Nureki O, Ito K: An omnipotent role of archaeal EF1α in translational elongation and termination, and quality control of protein synthesis. Proc Natl Acad Sci USA. 107: 17575-17579 (2010) [PubMed]
Kobayashi K, Kikuno I, Kuroha K, Saito K, Ito K, Ishitani R, Inada T, Nureki O: Structural Basis for mRNA Surveillance by Archaeal Pelota and GTP-bound EF1α Complex. Proc Natl Acad Sci USA. 107: 19242-19247 (2010) [PubMed]
Watanabe, Y., Nakamura, Y., Ito, K.: A novel class of bacterial translation factor RF3 mutations suggests specific structural domains for premature peptidyl-tRNA drop-off. FEBS Lett. 584 790-794 (2010) [PubMed]
Report abuse