8. Hidden Markov Models

Software

• • Tapas Kanungo HMM software

  • Daniel Dementhon HMM software

  • Nikolai Shokirev HMM software

  • The General HMM library (ghmm)

  • Hidden Markov Model (HMM) Toolbox for Matlab by Kevin Murphy

  • Java HMM library (jhmm)

  • The modhmm package by Hakan Viklund

  • An HMM classifier in C#

  • HMMs in Perl

  • The libhmm package

  • The myHMM package

  • HMMs in C++

  • Mauro Delorenzi's MAMOT HMM software

  • HMMs in VB6

  • HMMs in python (pyhmm)

  • Piero Fariselli's PHMM

• Programs for Biological sequence analysis by Peter Sestoft