Other Publications

Books

• • Bagos PG. Bioinformatics (in Greek). 2015. Σύνδεσμος Ελληνικων Ακαδημαϊκων Βιβλιοθηκών. Ελληνικά Ακαδημαϊκά Ηλεκτρονικά Συγγράμματα και Βοηθήματα. [Book Page]

Book Chapters

• • Bersimis F. and Bagos P. Polygenic risk scores and applications in clinical practice. In Statistical Methods and Applications in Systems Assurance and Quality (Edited By Sotiris Bersimis, Polychronis Economou, Athanasios Rakitzis). 2025 (pp 78-102). ISBN 9781032664040, CRC Press [PDF] [Pubmed] [Google Scholar]

  • Dimou N, Bagos P. Meta-Analysis Methods of Diagnostic Test Accuracy Studies. In Meta-Research 2022 (pp. 173-185). Humana, New York, NY. [PDF] [Pubmed] [Google Scholar]

  • Kontou PI, Pavlopoulou A, Bagos PG. Methods of Analysis and Meta-Analysis for Identifying Differentially Expressed Genes. Methods Mol Biol. 2018;1793:183-210. doi: 10.1007/978-1-4939-7868-7_12.[PDF] [Pubmed] [Google Scholar]

  • Dimou NL, Pantavou KG, Braliou GG, Bagos PG.Multivariate Methods for Meta-Analysis of Genetic Association Studies.Methods Mol Biol. 2018;1793:157-182. doi: 10.1007/978-1-4939-7868-7_11.[PDF] [Pubmed] [Google Scholar]

  • Tsaousis GN, Theodoropoulou MC, Hamodrakas SJ, Bagos PG. Predicting Alpha Helical Transmembrane Proteins Using HMMs. Methods Mol Biol. 2017;1552:63-82 [PDF] [Pubmed] [Google Scholar]

  • Tsaousis GN, Hamodrakas SJ, Bagos PG. Predicting Beta Barrel Transmembrane Proteins Using HMMs. Methods Mol Biol. 2017;1552:43-61 [PDF] [Pubmed] [Google Scholar]

  • Bagos PG, Hamodrakas SJ. Bacterial beta-barrel outer membrane proteins: A common structural theme implicated in a wide variety of functional roles, 2009, In A Daskalaki (Ed) Handbook of Research on Systems Biology Applications in Medicine, ISBN10: 1605660760, pp: 182-207 [PDF]

  • Sgourakis NG, Bagos PG, Hamodrakas SJ. Computational methods for the prediction of GPCRs coupling selectivity, 2009, In A Daskalaki (Ed) Handbook of Research on Systems Biology Applications in Medicine, ISBN10: 1605660760, pp: 167-181 [PDF]

Papers in International Conference Proceedings

• • Kontou P, Sasilioglou I, Bagos P. A partial correlation network from summary data can identify causally related diseases. 12th International Work-Conference on Bioinformatics and Biomedical Engineering-IWBBIO2025.  16-18 July 2025, Spain

  •  Manios G, Kandylas D, Kylonis A, Kontou P.  Bagos P.  fastMETA: a fast and efficient tool for multivariate meta-analysis of GWAS. 20th conference on Computational Intelligence methods for Bioinformatics and Biostatistics, September 10 - 12, 2025 in Milano, Italy (CIBB2025)

  • Pavlopoulos GA, Iacucci E, Iliopoulos I, Bagos P  Interpreting the Omics ‘era’ Data. G. A. Tsihrintzis et al. (eds.), Multimedia Services in Intelligent Environments, Smart Innovation, Systems and Technologies 25, DOI: 10.1007/978-3-319-00375-7_6, Springer International Publishing Switzerland 2013, pp 79-100 79-100 [PDF]

  • Danai K. Fimereli, Konstantinos D. Tsirigos, Zoi I. Litou, Theodore D. Liakopoulos, Pantelis G. Bagos and Stavros J. Hamodrakas. CW-PRED: A HMM-Based Method for the Classification of Cell Wall-Anchored Proteins of Gram-Positive Bacteria. ARTIFICIAL INTELLIGENCE: THEORIES AND APPLICATIONS. Lecture Notes in Computer Science, 2012, Volume 7297/2012, 285-290, SETN2012 [PDF]

  • Bagos PG, Nikolopoulos GK. Methods for meta-analysis of population-based genetic association studies. 2006, In BIOSTAT 2006, Filia Vonta (Ed), Proceedings of the International Conference on Statistical Models for Biomedical and Technical Systems, Limassol, Cyprus, pp 212-218 [PDF]

  • Bagos PG, Liakopoulos TD, Hamodrakas SJ. Efficient Training of Hidden Markov Models for protein sequence analysis. Proceedings of ICCMSE 2004, Lecture Series on Computers and Computational Science, Vol 1, pp. 53-56. [PDF]

  • Bagos PG, Liakopoulos TD, Hamodrakas SJ. Faster Gradient Descent Training of Hidden Markov Models, Using Individual Learning Rate Adaptation. Proceedings of ICGI 2004 Lecture Notes In Artificial Intelligence, Vol. 3264, pp. 40-52. [PDF]

  • Bagos PG, Liakopoulos TD, Hamodrakas SJ. Maximum Likelihood and Conditional Maximum Likelihood learning algorithms for Hidden Markov Models with labeled data-Application to transmembrane protein topology prediction. In T.E. Simos (ed). Computational Methods in Sciences and Engineering, Proceedings of the International Conference 2003 (ICCMSE 2003), World Scientific Publishing Co. Pte. Ltd. Singapore: pp. 47-55.[PDF]

Posters and oral presentations in International Conferences

• • Panagiota I. Kontou, Georgios Tsionkis, Elisavet Andronidou, Georgia Braliou, Pantelis G. Bagos. Methods for meta-analysis of IC50 values in pharmacological research. Joint Conference of the Italian and Eastern Mediterranean Regions of the International Biometric Society (IBS-IR-EMR2025)

  • Kalliopi K. Exarchou-Kouveli, Evangelia A Stasi, Georgios A. Manios, Panagiota I. Kontou, Pantelis G. Bagos. GWAS genotype reconstruction from summary statistics: a comparison of methods. Joint Conference of the Italian and Eastern Mediterranean Regions of the International Biometric Society (IBS-IR-EMR2025)

  • Tsoukalas NG, Tsitsimpis Α, Katsouda A, Arvanitou E, Bagos P. Endocrine immune-related adverse events (irAEs) of combined immunotherapy in solid tumors: Systematic review and meta-analysis. Abstract Book of the ESMO Congress 2021, 16 – 21 September 2021. DOI:https://doi.org/10.1016/j.annonc.2021.08.1374 

  • Ahmed Fouad Rumia, Margarita Theodoropoulou, Pantelis Bagos. Computational studies on eukaryotic transmembrane β-barrel proteins. Bioinformatics and Computational Biology Conference (BBCC) 2017, Naples

  • Konstantina Vennou, Panagiota Kontou and Pantelis Bagos. An approach for multiple outcome meta-analysis of microarray data. The 17th European Conference on Computational Biology (ECCB), Athens 2018

  • Ioannis Tamposis, Konstantinos Tsirigos, Margarita C. Theodoropoulou, Panagiota Kontou and Pantelis Bagos. Semi-supervised learning of Hidden Markov Models for biological sequence analysis. The 17th European Conference on Computational Biology (ECCB), Athens 2018

  • Margarita Theodoropoulou, Ioannis Mintsopoulos, Pantelis Bagos. Viterbi Training of Hidden Markov Models for Labeled Sequences. Joint 25th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB) and 16th European Conference on Computational Biology (ECCB) 2017 [HTML]

  • Ioannis Tamposis, Margarita Theodoropoulou, Konstantinos Tsirigos, Pantelis Bagos. Extending Hidden Markov Models to allow conditioning on previous observations Joint 25th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB) and 16th European Conference on Computational Biology (ECCB) 2017 [HTML]

  • G. Kapoula, P. Parcharidis, P. Bagos. COMPARATIVE CLINICAL EVALUATION OF TWO SECOND AND ONE THIRD GENERATION PARATHYROID

  • HORMONE ASSAY IN BOTH HEALTHY AND HEMODIALYSIS PATIENTS. Poster Abstracts – EuroMedLab Athens 2017 – Athens, 11-15 June 2017 • DOI 10.1515/cclm-2017-5021

  • Clin Chem Lab Med 2017; 55, Special Suppl, pp S1 – S1121, June 2017

  • Theodoropoulou M, Tsirigos K, Hamodrakas S and Bagos P. Recent updates in the Database of Outer Membrane Proteins (OMPdb) in 2016. F1000Research 2016, 5:2343 (poster) (doi: 10.7490/f1000research.1113157.1) European Conference on Computational Biology -ECCB2016, The Hague, Netherlands, 3-7 September 2016

  • Tsirigos K, Elofsson A and Bagos P. PRED-TMBB2: Improved topology prediction and detection of beta-barrel outer membrane proteins.(*) F1000Research 2016, 5:2342 (poster) (doi: 10.7490/f1000research.1113156.1) European Conference on Computational Biology -ECCB2016, The Hague, Netherlands, 3-7 September 2016

  • Dimou N, Bagos P, Tools for robust analysis in genome-wide association studies using STATA. In J. Lorenzo Bermejo, C. Greenwood, J. Houwing-Duistermaat, A.D. Paterson, A. Scherag, N. Tintle, F. Gagnon, A.F. Wilson Eds, 2014. Abstracts from the 23rd Annual Meeting of the International Genetic Epidemiology Society. Vienna, Austria. ISBN 978—1-940377-01-8. pp. 142. Available through: http://www.geneticepi.org/meeting-abstracts/. [PDF]

  • Dimou N, Pantavou K, Bagos P, Apolipoprotein E gene prolymorphism and left ventricular failure in beta-thalassemia: A meta-analysis. In J. Lorenzo Bermejo, C. Greenwood, J. Houwing-Duistermaat, A.D. Paterson, A. Scherag, N. Tintle, F. Gagnon, A.F. Wilson Eds, 2014.Abstracts from the 23rd Annual Meeting of the International Genetic Epidemiology Society. Vienna, Austria. ISBN 978—1-940377-01-8. pp. 213. Available through: http://www.geneticepi.org/meeting-abstracts/. [PDF]

  • Dimou N, Bagos P, A multivariate method for meta-analysis of multiple outcomes in genetic association studies. Abstracts from the 35th Annual Conference of the International Society for Clinical Biostatistics. Vienna, Austria. pp 26. Available through: http://www.abstractserver.com/iscb2014/eBook/index.html [PDF]

  • Christos Ouzounis, Stavros Hamodrakas, Ioannis Iliopoulos, Pantelis Bagos, Vasilis Promponas. The Hellenic Society for Computational Biology and Bioinformatics. Poster presentation. ISMB 2011 [HTML]

  • Hatzou M, Bagos PG. Mixture Transition Distribution (MTD) Markov models: Statistical modeling and prediction of protein families. Best Poster Award HSCBB10. [HTML] [PDF]

  • Theodoropoulou MC, Spyropoulos IC, Bagos PG, Hamodrakas SJ. GPDB: a database of GPCRs and G-proteins, now integrating information concerning interaction with effectors. 33rd FEBS Congress and 11th IUBMB Conference, FEBS JOURNAL 275: 213-213 Suppl. 1, 2008 [PDF]

  • Tsirigos KD, Bagos PG, Plessas SK, Hamodrakas SJ. A comprehensive analysis of experimentally verified archaeal signal peptides reveals unexpected findings. 33rd FEBS Congress and 11th IUBMB Conference, FEBS JOURNAL 275: 219-219 Suppl. 1, 2008 [PDF]

  • Litou ZI, Bagos PG, Tsirigos KD, Liakopoulos TD, Hamodrakas SJ. Prediction of sortase substrates in Gram-positive bacteria with a hidden Markov model. 33rd FEBS Congress and 11th IUBMB Conference, FEBS JOURNAL 275: 224-224 Suppl. 1, 2008 [PDF]

  • Tsaousis GN, Tsirigos KD, Andrianou XD, Bagos PG, Hamodrakas SJ. A database of experimentally derived topological models of transmembrane proteins. 33rd FEBS Congress and 11th IUBMB Conference, FEBS JOURNAL 275: 213-213 Suppl. 1, 2008 [PDF]

  • Bagos PG, Bersimis S. Discriminating and clustering membrane proteins using the exact distribution of various scans-based rules. 28th Annual Conference of the International Society for Clinical Biostatistics (ISCB). Alexandroupolis, Greece, 2007. [PDF]

  • Bagos PG, Nikolopoulos GK. Generalized least squares for assessing trends in cumulative meta-analysis with applications in genetic epidemiology. 28th Annual Conference of the International Society for Clinical Biostatistics (ISCB). Alexandroupolis, Greece, 2007 (*) [PDF]

• • Nikolopoulos GK, Tsantes AE, Bagos PG, Tsiara CG, Mantzios GP, Kapsimali V, Pappa V, Travlou AS. Association between the plasminogen activator inhibitor-1 4G/5G gene polymorphism and ischemic stroke: A meta-analysis. Blood, 108 (11): 4010 Part 2; 2006 [HTML]

  • A. Tsantes, G. Nikolopoulos, P. Bagos, G. Gialeraki, P. Mantzios, S. Travlou. Platelet glycoprotein 1a C807T polymorphism as a risk factor for coronary artery disease: a meta-analysis. 11th Congress of the European Hematology Association, Amsterdam, June 15th-18th, 2006 [PDF]

  • A. Tsantes, P. Bagos, G. Nikolopoulos, I. Merkouri, S. Travlou. Correlation of Platelet glycoprotein 1a C807T polymorphism and risk for cerebrovascular disease: a meta-analysis. 11th Congress of the European Hematology Association, Amsterdam, June 15th-18th, 2006 [PDF]

  • Tsirigos CD, Bagos PG, Promponas VJ, Hamodrakas SJ. Enhancing Transmembrane beta-Barrel Topology Prediction by Information Encoded in Multiple Sequence Alignments. European Conference on Computational Biology - ECCB 2006, Eilat, Israel [HTML]

  • Bagos PG, Hamodrakas SJ. Algorithms for structure prediction of bacterial beta-barrel outer membrane proteins. 2nd International Greek Biotechnology Forum (IGBF2), DAIS Cultural Center, Athens, Greece, 1-3 July 2005 (invited speaker)

  • Petsalakis ΕΙ, Bagos PG, Litou ΖΙ, Hamodrakas SJ. N-terminal sequence-based prediction of subcellular location. BioSysBio: Bioinformatics and Systems Biology Conference. Edinburgh, UK.BMC Bioinformatics 2005, 6(Suppl 3):S11 [PDF] [HTML]

  • Papasaikas PK, Bagos PG, Litou, ZI and Hamodrakas SJ. A novel method for GPCR recognition and family classification, using fingerprints derived from profile Hidden Markov Models. CMTPI-2003, Computational Methods in Toxicology and Pharmacology Integrating Internet Resources (Thessaloniki, Greece, September 17–19, 2003). (*)

  • Tsirpanlis G, Bagos P, Ioannou D, Bleta A, Marinou I, Lagouranis A, Chatzipanagiotou S, Nicolaou C. Exploring Inflammation in Hemodialysis patients: Persistent and Superimposed Inflammation - a longitudinal study. World Congress of Nephrology, Berlin, Germany, 8–12 June 2003. (*)

  • Tsirpanlis G, Chatzipanagiotou S, Ioannidis A, Ifanti K, Bagos P, Lagouranis A, Poulopoulou C, Nicolaou C. The effect of viable Chlamydia pneumoniae on serum cytokines and adhesion molecules in hemodialysis patients. International Congress on Mechanisms of Uremic Toxicity, Uremia and the Cardiovascular System, Würzburg, Germany, September 13-16, 2002. (*)

(*) Extended abstracts of these works were subsequently published in peer-review journals

Publications in Greek

• • Bagos PG, Hamodrakas SJ. The role and importance of bioinformatics methods in predicting the structure and function of outer membrane proteins of bacteria. 2006, BIO, 14:48-55 [HTML]

  • Tsiara C, Bagos P, Papadimopoulos D, Paraskeva D, Nikolopoulos GK: "Multiple sclerosis and dental amalgam: A meta-analysis of observational studies", STOMATOLOGIA 63 (3) : 103-111 (Sep 2006)[PDF] [HTML]

Interviews and newspaper articles (in Greek)

• • Συνέντευξη στο Δελτίο Ειδήσεων του Σταρ Κεντρικής Ελλάδας και την Θ. Παληού για το 18ο συνέδριο της ΕΕΥΒΒ, 15/10/2024 (διαθέσιμη εδώ)

  • Συνέντευξη στο Ρ/Σ Lamia Polis 87.7 (16/10/2024) διαθέσιμη εδώ

  • "Η απόψίλωση του δημόσιου πανεπιστημίου" Documento, 8/10/2024

  • Σύντομη παρέμβαση για τα ιδιωτικά πανεπιστήμια στον LAMIA FM1 (12/1/2024)

  • "Κάνει διακρίσεις ο κορωνοϊός;", Τα Νέα, 9/2/2022 (διαθέσιμο εδώ)

  •  Συνέντευξη στον Χρήστο Σίμο για την ΕΒΕ και τα Πανεπιστήμια, 27/7/2021 (Left.gr) 

  • "Βάση απαξίωσης για υποψηφίους και ΑΕΙ". 8/6/2021 Documento

  • "Πανδημία και Εκπαίδευση". Διαδικτυακή Εκδήλωση της Εκπαιδευτικής Λέσχης (με Δ. Αναστασίου, Π. Παπανικολάου, Δ. Μαριόλη, Β. Μακρή) 24/4/2021

  • "Ο κόσμος πρέπει να αγκαλιάσει το πανεπιστήμιο" (Συνέντευξη στην Θεοφανία Μίγκου). Στερεά Νέα 27/03/2021

  • "Τελικά τα lockdown ήταν μονόδρομος;" (Συνέντευξη στον Νίκο Σταματινη) Oneman 23/3/2021

  • "Η Προβληματική κατανόηση μιας έρευνας-Τι ισχύει άραγε για τις διαδηλώσεις;" (με Δημήτρη Αναστασίου) The Press Project 14/3/2021 

  • "Αντιμέτωποι με την πραγματικότητα της κρίσης" (με Δημήτρη Αναστασίου)   Documento 25/12/2020

  • "Εννιά μήνες Covid-19. Η ελληνική εμπειρία" (διαδικτυακή συζήτηση με Γιώργο Γουγά και Σπύρο Καρακαϊδό) Real Politic (live).  9/12/2020

  • "Υπάρχει θέμα με τον αλγόριθμο EVA" (συνέντευξη στον Γιώργο Σαχίνη) Ράδιο 98.4 Κρήτη 4/12/2020

  • "Στο Εργαστήριο" (συνέντευξη στην Μάρνυ Παπαματθαίου) Τα Νέα 6/10/2019

  • "Οι παρελάσεις και ο ύμνος του ΕΑΜ" Βαθύ Κόκκινο 29/10/2014

  • "Το Ελληνικό παράδοξο στην επιστημονική έρευνα" (με Αναστάση Περράκη). Το Βήμα 25/10/2014