Software and databases
AMOS Gateway: A Science Gateway for Atomic, Molecular, and Optical Physics.
Atomic physics
Herman-Skillman Program Code (no longer available at the original website)
Molecular physics
MOLDEN a pre- and post processing program of molecular electronic structure
Databases
The diatomic molecular spectroscopy database (spectroscopy constants of ground states and first excited states of diatomic polar molecules with relevance to astrophysics and cold chemistry) [Ref]
X-Ray Interactions With Matter, http://henke.lbl.gov/optical_constants (currently broken; see the original paper as a replacement)