Publications
†: co-1st author, *: co-corresponding Author
In preparation
Vu, N.-A. T.†, Song, Y. M., Yun, H.-Y.*, Kim, S. K.*, Lee, S.*, Kim, J. K.*, Chae, J.-W.*, Beyond the Michaelis-Menten: Evaluation of a Novel IVIVE Approach for Predicting In Vivo Intrinsic Clearance from Hepatocyte Assays. (Submitted)
Chae, S. J.†, Kim, J. I.†, Jo, H., Song, Y. M., Jeon, S., Moon, S.-Y., Lee, J.-H., Oh, S., Chung, S., Kim, J. K.*, Kim, J.-H.*, Identifying risk factors of PTSD among a nationwide cohort of firefighters using a machine learning algorithm. (Submitted)
Song, Y. M.†, Jeon, S.†, Cho, A., Chung, S., Ahn, Y., Kim, J. K.*, Suh, S.*, Individual and occupational predictors of sleep intervention response among shift-working firefighters. (Submitted)
Lim, D.†, Moon, S.†, Song, Y. M., Kim, J., Kim, K., Cho, B-K, Kim, J.*, Kim, J. K.*, Toward single-cell control: noise-robust perfect adaptation in biomolecular systems. (In revision, Nature Communications)
2025
Lee, J.†, Song, Y. M.†, Yoon, H.-Y., Choi, S.*, Kim, J. K.*, (2025). Beyond Michaelis-Menten: A modified enzyme kinetics equation improves drug metabolism prediction in bottom-up PBPK modeling. European Journal of Pharmaceutical Sciences
Song, Y. M.†, Choi, S. J.†, Lim, D., Wijaya, R. H., Jang, H. J., Park, H. R., Joo, E. Y.*, Kim, J. K.*, (2025). A digital, real-time, history-based sleep-management tool to enhance alertness. Sleep
Jang, H. J.†, Song, Y. M.†, Jeon, J. S., Yun, H., Kim, S. K.*, Kim, J. K.*, (2025). Optimizing enzyme inhibition analysis: Precise estimation with a single inhibitor concentration. Nature Communications.
Lim, D.†, Choi, S. J.†, Song, Y. M., Park, H. R., Joo, E. Y.*, Kim, J. K.*, (2025). Enhanced circadian phase tracking: A 5-hour DLMO sampling protocol using wearable data. Journal of Biological Rhythms.
Song, Y. M.†, Lee, K, Kim, J. K.*, (2025). Validity of the total QSSA in stochastic biochemical reaction networks, JKSIAM
2024
Lim, D.†, Jeong, J.†, Song Y. M., Lee, H.-J.*, Kim J. K.*, (2024). Highly accurate prediction of mood episodes in mood disorder patients using sleep and circadian rhythm features from wearables. npj Digital Medicine.
Song, Y. M.†, Kim, J. K.*, (2024). What’s driving rhythmic gene expression: Sleep or the clock?, Cell Systems.
Song, Y. M.†, Jeong, J.†, de los Reyes, A. V.†, Lim, D., Cho, C.-H., Yeom, J. W., Lee, T., Lee, J.-B., Lee, H.-J.*, Kim, J. K.*, (2024). Causal dynamics of sleep, circadian rhythm, and mood in major depression and bipolar disorder patients: Insights from longitudinal wearable device data. eBiomedicine.
Song, Y. M.†, Campbell, S.†, Shiau, L., Kim, J. K.*, Ott, W.*, (2024). Noisy delay denoises biochemical oscillators. Physical Review Letters.
2023
Lee, M. P.†, Hoang, K.†, Park, S., Song, Y. M., Joo, E. Y., Chang, W.*, Kim, J. H.*, Kim, J. K.*, (2023). Imputing missing sleep data from wearables with neural networks in real-world settings. Sleep.
Song, Y. M.†, Choi, S. J.†, Park, S. H., Lee, S. J., Joo, E. Y.*, Kim, J. K.*, (2023). A real-time, personalized sleep intervention using mathematical modelling and wearable devices. Sleep.
Vu, N. T.†, Song, Y. M.†, Tran, Q. T.†, Yun, H., Kim, S. K.*, Chae, J., Kim*, J. K.*, (2023). Beyond the Michaelis-Menten: accurate prediction of drug interactions through cytochrome P450 3A4 induction. Clinical Pharmacology & Therapeutics.
2022
Jeong, E. M.†, Song, Y. M., & Kim, J. K.*, (2022). Combined multiple transcriptional repression mechanisms generate ultrasensitivity and oscillations. Interface Focus.
Song, Y. M.†, Hong, H.†, & Kim, J. K.*, (2021). Universally valid reduction of multiscale stochastic biochemical systems using simple non-elementary propensities. PLoS Comp Biol.
Kwon, G., Park, S. H., Song, Y. M., Choi, S. W., Park, P. S.*, (2014). A study on solutions of Jisuguimundo using the range of magic sums. Journal for History of Mathematics.