Talks and Posters
2020 Annual Conference of Korean Society for Industrial and Applied Mathematics, Poster
2021 Society for Mathematical Biology Annual Meeting, Poster
2021 Spring Conference of Korean Society for Industrial and Applied Mathematics, Poster
2021 Annual Conference of Korean Society for Mathematical Biology, Special Session
2021 Annual Conference of Korean Society for Industrial and Applied Mathematics, Poster
2021 Annual Meeting of Korean Society for Mathematical Biology, Poster
2022 Society for Research on Biological Rhythms Bienniel Conference, Poster
2022 Spring Conference of Korean Society for Industrial and Applied Mathematics, Poster
2022 Annual Conference of Korean Society for Mathematical Biology, Special Session
2022 Regular Meeting of Korean Sleep Research Society, Oral presentation
2022 Society for Industrial and Applied Mathematics Conference on the Life Sciences, Minisymposium
2022 International Conference on Systems Biology, Wildcards session, 10 min talk
2022 Annual Conference of Korean Society for Industrial and Applied Mathematics, General Session
2022 Workshop on Non-equilibrium Phenomena in Physics and Biology, Poster
2023 The 8th CIJK Conference on Mathematical and Theoretical Biology, General Session
2023 Dynamical Systems in the Life Sciences, Poster
2023 Society for Mathematical Biology Annual Meeting, Poster
2023 The Korean Society for Molecular and Cellular Biology, Circadian Rhythm Branch Symposium, Poster
2023 International Council for Industrial and Applied Mathematics Satellite Workshop: Stochastic Modeling and Data Analysis for Biological Systems, Poster
2023 International Council for Industrial and Applied Mathematics TOKYO, Minisymposium
2023 International Conference on Systems Biology, Systems Pharmacology Session, 10 min talk
2023 Annual Conference of Korean Society for Industrial and Applied Mathematics, Minisymposium
2023 Korean Society of Sleep Medicine, Invited talk
Lab Seminar
Eilertsen, J., Roussel, M. R., Schnell, S., & Walcher, S. (2021). On the quasi-steady-state approximation in an open Michaelis–Menten reaction mechanism. AIMS mathematics, 6(7), 6781.
Kumpošt, V., Vallone, D., Gondi, S. B., Foulkes, N. S., Mikut, R., & Hilbert, L. (2021). A stochastic oscillator model simulates the entrainment of vertebrate cellular clocks by light. Scientific reports, 11(1), 1-14. (Link)
Hempel, T., Del Razo, M. J., Lee, C. T., Taylor, B. C., Amaro, R. E., & Noé, F. (2021). Independent Markov decomposition: Toward modeling kinetics of biomolecular complexes. Proceedings of the National Academy of Sciences, 118(31). (Link)
Bonarius, J., Papatsimpa, C., & Linnartz, J. P. (2020). Parameter estimation in a model of the human circadian pacemaker using a particle filter. IEEE Transactions on Biomedical Engineering, 68(4), 1305-1316. (Link)
Weisenberger, C., Hathcock, D., & Hinczewski, M. (2021). Cellular Signaling beyond the Wiener–Kolmogorov Limit. The Journal of Physical Chemistry B, 125(46), 12698-12711. (Link)
Padoan, A., Forni, F., & Sepulchre, R. (2021). Balanced truncation for model reduction of biological oscillators. Biological cybernetics, 115(4), 383-395. (Link)
Estrada, J., Wong, F., DePace, A., & Gunawardena, J. (2016). Information integration and energy expenditure in gene regulation. Cell, 166(1), 234-244. (Link)
Landman, J., Lunel, S. M. V., & Kegel, W. K. (2021). Transcription factor competition facilitates self-sustained oscillations in single gene genetic circuits. bioRxiv. (Link)
Katori, M., Shi, S., Ode, K. L., Tomita, Y., & Ueda, H. R. (2022). The 103,200-arm acceleration dataset in the UK Biobank revealed a landscape of human sleep phenotypes. Proceedings of the National Academy of Sciences, 119(12), e2116729119. (Link)
Jia, C., & Grima, R. (2022). Accuracy and limitations of extrinsic noise models to describe gene expression in growing cells. bioRxiv. (Link)
Laloum, D., & Robinson-Rechavi, M. (2022). Rhythmicity is linked to expression cost at the protein level but to expression precision at the mRNA level. PLoS computational biology, 18(9), e1010399. (Link)
Fang, Z., Gupta, A., & Khammash, M. (2022). A scalable approach for solving chemical master equations based on modularization and filtering. bioRxiv, 2022-10. (Link)
Rombouts, J., Verplaetse, S., & Gelens, L. (2023). The ups and downs of biological oscillators: A comparison of time-delayed negative feedback mechanisms. bioRxiv, 2023-03. (Link)
Masuda, K., Tokuda, I. T., Nakamichi, N., & Fukuda, H. (2021). The singularity response reveals entrainment properties of the plant circadian clock. Nature Communications, 12(1), 864. (Link)
Akbari, A., Haiman, Z. B., & Palsson, B. O. (2023). A data-driven approach for timescale decomposition of biochemical reaction networks. bioRxiv, 2023-08. (Link)
Venkatachalapathy, H., Yang, Z., Azarin, S. M., Sarkar, C. A., & Batchelor, E. (2023). Pulsed stimuli entrain p53 to synchronize single cells and modulate cell-fate determination. bioRxiv, 2023-10. (Link)
Kong, K. K., Luo, C., & Liu, F. (2023). A trade-off in controlling upstream and downstream noise in signaling networks. bioRxiv, 2023-08. (Link)
Sahay, S., Adhikari, S., Hormoz, S., & Chakrabarti, S. (2023). An improved rhythmicity analysis method using Gaussian Processes detects cell-density dependent circadian oscillations in stem cells. Bioinformatics, 39(10), btad602. (Link)