Sauerborn, E., Corredor, C., Reska, T., Perlas, A., Atum, S., (...), Urban, L. (2023) Detection of hidden antibiotic resistance through real-time genomics. Accepted at Nature Communications.

Urel, H., Benassou, S., Reska, T.,(...),  Urban, L. (2024) Nanopore- and AI- empowered metagenomic viability inference. Preprint, with PLOS Computational Biology.

Perlas, A., Reska, T., (...), Urban, L. (2024) Latest RNA and DNA nanopore sequencing allows for rapid avian influenza profiling. Preprint, with Virus Evolution.

Reska, T., Pozdniakova, S., (...), Urban, L. (2023) Air monitoring by nanopore sequencing.  Preprint, with ISME Communications.

Urban, L., (...),  Morales, H. (2023) The ghost of selection past: evolution and conservation relevance of the kākāpō color polymorphism. Preprint, with PLOS Biology.

Urban, L., (...), Digby, A. (2023) Non-invasive real-time genomic monitoring of the critically endangered kākāpō. eLife.

Gould, G., (...), Urban, L., (...), Parker, T. (2023) Same data, different analysts: variation in effect sizes due to analytical decisions in ecology and evolutionary biology. preprint, with BMC Biology.

Guhlin, H., (...), Urban, L., (...), Dearden, P. (2023) Species-wide genomics of kakapo provides tools to accelarate recovery. Nature Ecology & Evolution.

European Reference Genome Atlas Council (incl. Urban, L., 2023) Biodiversity: an atlas of European reference genome. Nature.

Urban, L., (...), van Oosterhout, C. (2023) Real-time Genomics for One Health. Molecular Systems Biology. 

West, A., (...), Urban, L. (2023) Capturing species-wide diversity of the gut microbiota and its relationship with genomic variation in the critically endangered kākāpō. Molecular Ecology.

Digby, A., (...), Urban, L., (...), Kākāpō Recovery Team. (2023) Hidden impacts of conservation management on fertility of the critically endangered kākāpō. PeerJ.

Urban, L., (...), Elkheir, L. (2022) eLife’s new model and its impact on science communication. eLife.

van Oosterhout, C., (...), Urban, L., (...), Morales, H. (2022) Genomic erosion in the assessment of species extinction risk and recovery potential. bioRxiv.

Pearman, W., Urban, L., Alexander, L. (2022) Commonly used Hardy–Weinberg equilibrium filtering schemes impact population structure inferences using RADseq data. Molecular Ecology Resources.

West, A., (...), Kākāpō Aspergillosis Research Consortium (incl. Urban, L.), Taylor, M. (2022) Influence of management practice on the microbiota of a critically endangered species: a longitudinal study of kākāpō chick faeces and associated nest litter. Animal microbiome.

Urban, L.*, (…), Stammnitz, M. R. (2021) Freshwater monitoring with nanopore sequencing. eLife 10:e61504.

Cheng, H., (...), Urban, L., (...)., Li, H. (2022) Haplotype-resolved assembly of diploid individuals without parental data. Nature Biotechnology.

PCAWG Transcriptome Core Group (incl. Urban, L.*), (...), Zhang, Z. (2020): Genomic basis for RNA alterations in cancer. Nature 578, 129–136.

Formenti, G., (...), Urban, L., (...)., Bálint, M. (2022) The era of reference genomes in conservation genomics. Trends in Ecology & Evolution 37, 3: 197-202.

Oberle, A.* & Urban, L.*, Falch, S., Nagai, Y., Ulm, P. A., Hengstschläger, M., Feichtinger, M (2021) 16S rRNA long-read nanopore se­quenc­ing is fea­si­ble and re­li­able for en­dome­trial mi­cro­biome analy­sis. RBMO 

Macey, J. R., (…), Urban, L., (…), Gemmell, N. G. (2021) Evidence of wo deeply divergent co-existing mitochondrial genomes in the Tuatara. Nature Communications Biology 4, 116.

The ICGC/TCGA PCAWG Consortium (incl. Urban, L.) (2020): Pan-cancer analysis of whole genomes. Nature 578, 82–93.

Linker, S.M., Urban, L., Clark, S.J. et al. (2019) Combined single-cell profiling of expression and DNA methylation reveals splicing regulation and heterogeneity. Genome Biol 20, 30.

Edgecombe, J., Urban, L., Todd, E. V., Gemmell, N. J. (2021) Might gene duplication and neofunctionalization contribute to the sexual lability observed in fish? Sexual Development 15, 122-133.

Bailey, M.H., Meyerson, W.U., Dursi, L.J.,PCAWG Consortium (incl. Urban, L.), et al. (2020) Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples. Nat Commun 11, 4748. 

Li, C.H., Prokopec, S.D., Sun, R.X.,PCAWG Consortium (incl. Urban, L.), et al. (2020) Sex differences in oncogenic mutational processes. Nat Commun 11, 4330. 

Urban, L., Remmele, C.W., Dittrich, M. et al. (2020) covRNA: discovering covariate associations in large-scale gene expression data. BMC Res Notes 13, 92. 

Avsec, Z., (…), Urban, L., (…), Gagneur, J. (2019): The Kipoi repository accelerates community exchange and reuse of predictive models for genomics. Nature Biotechnology 37, 592-600.

Calabrese, C.* & Lehmann, K. V.* & Urban, L.*, (...), Stegle O. (2017) Assessing the Gene Regulatory Landscape in 1,188 Human Tumors. bioRxiv preprint.

Jeunen, G.* & Urban, L.*, (…), Gemmell, N. (2020) Marine environmental DNA (eDNA) for biodiversity assessments: a one-to-one comparison between eDNA and baited remote underwater video (BRUV) surveys. Authorea; under review at Molecular Ecology Resources.