Publication list
2024
Vander Meersche Y, Cretin G, Gheeraert A, Gelly J-C, Galochkina T. ATLAS: protein flexibility description from atomistic molecular dynamics simulations. Nucleic Acids Res 52(D1), D384–D392 (2024). DOI: 10.1093/nar/gkad1084
Versini R, Sritharan S, Fas BA, Tubiana T, Aimeur SZ, Henri J, Erard M, Nüsse O, Andreani J, Baaden M, Fuchs P, Galochkina T, Chatzigoulas A, Cournia Z, Santuz H, Sacquin-Mora S, Taly A. A perspective on the prospective use of AI in protein structure prediction. J Chem Inf Model 64(1), 26-41 (2024). DOI: 10.1021/acs.jcim.3c01361
Floch A, Galochkina T, Pirenne F, Tournamille C, de Brevern AG. Molecular dynamics of the human RhD and RhAG blood group proteins. Front Chem, 12:1360392 (2024). DOI: 10.3389/fchem.2024.1360392
2023
Cretin G, Prérin C, Zimmermann N, Galochkina T, Gelly J-C. ICARUS: Flexible protein structural alignment based on Protein Units. Bioinformatics 39(8), btad459 (2023), DOI: 10.1093/bioinformatics/btad459
Susmelj A K, Ren Y, Vander Meersche Y, Gelly J-C, Galochkina T. Poincaré maps for visualization of large protein families. Brief Bioinformatics 24(3), bbad103 (2023), DOI: 10.1093/bib/bbad103
2022
Galochkina T, Gelly J-C. Peptide and Peptidomimetic Therapeutics: From Bench to Bedside, Chapter 13: Knottin peptidomimetics as therapeutics (2022). Elsevier Academic Press (book chapter)
Cretin G, Galochkina T, Vander Meersche Y, de Brevern A G, Postic G, Gelly J-C. SWORD2: Hierarchical analysis of protein 3D structures, Nucleic Acids Res, gkac370 (2022). DOI: 10.1093/nar/gkac370
2021
Vander Meersche Y, Cretin G, de Brevern A G, Gelly J-C, Galochkina T. MEDUSA: Prediction of Protein Flexibility from Sequence, J Mol Biol 433(11), 166882 (2021). DOI: 10.1016/j.jmb.2021.166882
Buks R, Brusson M, Cochet S, Galochkina T, Cassinat B, Nemazanyy I, Peyrard T, Kiladjian J-J, de Brevern A G, Azouzi S, El Nemer W. ABCG2 Is Overexpressed on Red Blood Cells in Ph-Negative Myeloproliferative Neoplasms and Potentiates Ruxolitinib-Induced Apoptosis, IJMS 22(7), 3530 (2021). DOI: 10.3390/ijms22073530
Cretin G, Galochkina T, de Brevern A G, Gelly J-C. PYTHIA: Deep Learning Approach for Local Protein Conformation Prediction, IJMS 22(16), 8831 (2021). DOI: 10.3390/ijms22168831
2019
Galochkina T, Chong M N F, Challali L, Abbar S, Etchebest C. New insights into GluT1 mechanics during glucose transfer, Sci Rep 9, 998 (2019). DOI: 10.1038/s41598-018-37367-z
Kholina E G, Nesterenko A M, Galochkina T V, Gvozdev D A, Polyakova I V, Kovalenko I B, Strakhovskaya M G, Pisarev O A. Explicit measurement of the endotoxin adsorption efficiency detects non-Langmuir behavior at low concentrations. Anal Biochem 587, 113445 (2019).
2018
Galochkina T, Marion M, Volpert V. Initiation of reaction–diffusion waves of blood coagulation, Physica D: Nonlinear Phenomena 376,160-170 (2018). DOI: 10.1016/j.physd.2017.11.006
2017
Galochkina T, Bouchnita A, Kurbatova P, Volpert V. Reaction-diffusion waves of blood coagulation, Math Biosc 288, 130-139 (2017). DOI:10.1016/j.mbs.2017.03.008
Bouchnita A, Galochkina T, Kurbatova P, Nony P, Volpert V. Conditions of microvessel occlusion for blood coagulation in flow. IJNMBE 33(9), e2850 (2017). DOI: 10.1002/cnm.2850
Zlenko D V, Galochkina T V, Krasilnikov P M, Stadnichuk I N. Coupled rows of PBS cores and PSII dimers in cyanobacteria: symmetry and structure, Photosynthesis Res 133(1), 245-260 (2017). DOI: 10.1007/s11120-017-0362-2
Galochkina T, Chelushkin M, Sveshnikova A. Activation of Contact Pathway of Blood Coagulation on the Lipopolysaccharide Aggregates, MMNP 12(5), 196-207 (2017). DOI: 10.1051/mmnp/201712512
2016
Galochkina T, Zlenko D, Nesterenko A, Kovalenko I, Strakhovskaya M, Averyanov A, Rubin, A. Conformational dynamics of the single lipopolysaccharide O-antigen in solution, ChemPhysChem 17(18), 2839-53 (2016). DOI: 10.1002/cphc.201600524
Bouchnita A, Galochkina T, Volpert V. Influence of antithrombin on the regimes of blood coagulation: insights from the mathematical model, Acta Biotheoretica 64(4), 327-342 (2016). DOI: 10.1007/s10441-016-9291-2
Galochkina T, Ouzzane H, Bouchnita A, Volpert V. Traveling wave solutions in the mathematical model of blood coagulation. Applicable Analysis 96(16), 2891-2905 (2016). DOI: 10.1080/00036811.2016.1249863
Bouchnita A, Bouzaachane K, Galochkina T, Kurbatova P, Nony P, Volpert V. An individualized blood coagulation model to predict INR therapeutic range during warfarin treatment. MMNP 11(6), 28-44 (2016). DOI: 10.1051/mmnp/201611603
2015
Galochkina T, Bratus A, Pérez-García V M. Optimal radiation fractionation for low-grade gliomas: Insights from a mathematical model, Math Biosc 267, 1-9 (2015). DOI: 10.1016/j.mbs.2015.05.006
CONFERENCE PROCEEDING ARTICLES
Galochkina T, Zlenko D, Kovalenko I, Nesterenko A. Structural properties of the outer membrane of Gram-negative bacteria. 2015 IEEE 15th International Conference on Bioinformatics and Bioengineering (BIBE) . DOI: 10.1109/BIBE.2015.7367696
Galochkina T, Chong M F N, Cadet F, Etchebest C. Dynamics of glucose transporter GluT1 brings new insights into the impact of point mutations on the glucose transfer, FEBS OPEN BIO 9, 251-251 (2019). DOI: 10.1002/2211-5463.12675