Embedded Files
2022
Comparative Genome Analysis Across 128 Phytophthora Isolates Reveal Species-Specific Microsatellite Distribution and Localized Evolution of Compartmentalized Genomes. K Mandal, S Dutta, A Upadhyay, A Panda, S Tripathy*.Frontiers in Microbiology 13. [IF: 6.067]
Genome Analysis Coupled With Transcriptomics Reveals the Reduced Fitness of a Hot Spring Cyanobacterium Mastigocladus laminosus UU774 Under Exogenous Nitrogen SupplementMayuri Mukherjee, Aribam Geeta, Samrat Ghosh, Asharani Prusty, Subhajeet Dutta, Aditya Narayan Sarangi, Smrutisanjita Behera, Siba Prasad Adhikary, Sucheta Tripathy*. Frontiers in microbiology 13. [IF: 6.067]
Incipient Sympatric Speciation and Evolution of Soil Bacteria Revealed by Metagenomic and Structured Non-Coding RNAs Analysis. S Mukherjee, Z Kuang, S Ghosh, R Detroja, G Carmi, S Tripathy, Danny Barash, Milana Frenkel-Morgenstern, Eviatar Nevo, Kexin Li . Biology. 11 (8), 1110. [IF: 5.168]
2021
Editorial: Genomics and Effectomics of Filamentous Plant Pathogens.Ye W*, Wang Q*, Tripathy S*, Zhang M*, Vetukuri RR*. Front Genet. 2021 Feb 3;12:648690. doi: 10.3389/fgene.2021.648690. eCollection 2021. PMID: 33613652 [IF: 4.5]
Reconstructing Draft Genomes Using Genome Resolved Metagenomics Reveal Arsenic Metabolizing Genes and Secondary Metabolites in Fresh Water Lake in Eastern India. Ghosh S, Sarangi AN, Mukherjee M, Singh D, Madhavi M, Tripathy S*. Bioinform Biol Insights. 2021 Jun 22;15:11779322211025332. doi: 10.1177/11779322211025332. eCollection 2021. PMID: 34220198 [IF: 2.063]
Factors governing the sinterability, In vitro dissolution, apatite formation and antibacterial properties in B2O3 incorporated S53P4 based glass powders. Sakthi Prasad, Margit Fábián, Anal Tarafder, Shashi Kant, Prasanta Kumar Sinha, Sucheta Tripathy, Annapurna Kalyandurg, Amarnath Reddy Allu, Kaushik Biswas. Ceramics International. https://doi.org/10.1016/j.ceramint.2021.10.237 [IF: 4.6]
2020
sigFeature: Novel Significant Feature Selection Method for Classification of Gene Expression Data Using Support Vector Machine and t Statistic. P Das, A Roychowdhury, S Das, S Roychoudhury, S Tripathy* .Frontiers in Genetics 11, 247 2020. [IF: 4.599]
Yuzon JD, Travadon R, Malar C M, Tripathy S, Rank N, Mehl HK, Rizzo DM, Cobb R, Small C, Tang T, McCown HE, Garbelotto M, Kasuga T. Asexual Evolution and Forest Conditions Drive Genetic Parallelism in Phytophthora ramorum. Microorganisms. 2020 Jun 22;8(6):940. doi: 10.3390/microorganisms8060940. PMID: 32580470; PMCID: PMC7357085. [IF: 4.128]
Dasgupta P, Das A, Datta S, Banerjee I, Tripathy S, Chaudhuri S. Understanding the early cold response mechanism in IR64 indica rice variety through comparative transcriptome analysis. BMC Genomics. 2020 Jun 24;21(1):425. doi: 10.1186/s12864-020-06841-2. PMID: 32580699; PMCID: PMC7315535. [IF: 3.969]
Elucidating the effect of CaF2 on structure, biocompatibility and antibacterial properties of S53P4 glass. S Prasad, S Ganisetti, A Jana, S Kant, PK Sinha, S Tripathy, K Illath, Journal of Alloys and Compounds, Volume 831, 5 August 2020, https://doi.org/10.1016/j.jallcom.2020.154704. [IF: 4.175]
Paul K, Saha C, Nag M, Mandal D, Naiya H, Sen D, Mitra S, Kumar M, Bose D, Mukherjee G, Naskar N, Lahiri S, Das Ghosh U, Tripathi S, Poddar Sarkar M, Banerjee M, Kleinert A, Valentine A, Tripathy S, Sinharoy S, Seal A. A Tripartite Interaction among the Basidiomycete Rhodotorula mucilaginosa, N2-fixing Endobacteria, and Rice Improves Plant Nitrogen Nutrition. Plant Cell. 2020, Feb. 32(2):486-507. [Epub ahead of print] PubMed PMID: 31757927.[IF: 11.28]
Genome Annotator Light (GAL): A Docker-based package for genome analysis and visualization. Panda A, Chaudhari NM, Tripathy S*. Genomics. 2020 Jan; 112(1):127-134. doi: 10.1016/j.ygeno.2019.03.012. PMID: 30926570 Free article.[IF: 5.6]
2019
Ghosh S, Sarangi AN, Mukherjee M, Bhowmick S, Tripathy S*. Reanalysis of Lactobacillus paracasei Lbs2 Strain and Large-Scale Comparative Genomics Place Many Strains into Their Correct Taxonomic Position. Microorganisms. 2019 Oct25;7(11). pii: E487. doi: 10.3390/microorganisms7110487. PubMed PMID: 31731444. [IF: 4.128]
Prasad S, Gaddam A, Jana A, Kant S, Sinha PK, Tripathy S, Annapurna K, Ferreira JMF, Allu AR, Biswas K. (2019) Structure and Stability of High CaO- and P2O5-Containing Silicate and Borosilicate Bioactive Glasses. J Phys Chem B. 2019 Aug 23. doi: 10.1021/acs.jpcb.9b02455. [IF: 2.991]
Banerjee, N., Das, S., Tripathy, S. et al. MicroRNAs play an important role in contributing to arsenic susceptibility in the chronically exposed individuals of West Bengal, India Environ Sci Pollut Res (2019). https://doi.org/10.1007/s11356-019-05980-8. [IF: 4.223]
Malar C M, Yuzon JD, Panda A, Kasuga T, Tripathy S*. Updated assembly resource of Phytophthora ramorum Pr102 isolate incorporating long reads from PacBio sequencing. Mol Plant Microbe Interact. 2019 Jul 15. doi: 10.1094/MPMI-05-19-0147-A. [Epub ahead of print] PubMed PMID: 31306082. [IF: 4.171]
Panda A, Chaudhari NM, Mukherjee M, Ghosh S, Sarangi AN, Mathu Malar C, KantS, Sen D, Das A, Das S, Singh D, Prusty A, Tripathy S*. Genome/transcriptome collection of plethora of economically important, previously unexplored organisms from India and abroad. Data Brief. 2019 Jun 5;25:104099. doi: 10.1016/j.dib.2019.104099. eCollection 2019 Aug. PubMed PMID: 31294057; PubMed Central PMCID: PMC6595405.
Malar C M, Yuzon JD, Das S, Das A, Panda A, Ghosh S, Tyler BM, Kasuga T, Tripathy S*. Haplotype-phased genome assembly of virulent Phythophthora ramorum isolate ND886 facilitated by long-read sequencing reveals effector polymorphisms and copy number variation. Mol Plant Microbe Interact. 2019 Feb 22. doi: 10.1094/MPMI-08-18-0222-R. PubMed PMID: 30794480. [IF: 4.171]
Sen D, Paul K, Saha C, Mukherjee G, Nag M, Ghosh S, Das A, Seal A, Tripathy S*. A unique life-strategy of an endophytic yeast Rhodotorula mucilaginosa JGTA-S1-a comparative genomics viewpoint. DNA Res. 2019 Jan 7. doi: 10.1093/dnares/dsy044. PubMed PMID: 30615101. [IF: 5.24]
2018
P Nasker, M Mukherjee, S Kant, S Tripathy, A Sinha, M Das. Fluorine substituted nano hydroxyapatite: Synthesis, bio-activity and antibacterial response study. Ceramics International 44 (17), 22008-22013. [IF: 4.527].
Vetukuri RR, Tripathy S*#, Malar C M#, Panda A, Kushwaha SK, Chawade A, Andreasson E, Grenville-Briggs LJ, Whisson SC. Draft Genome Sequence for the Tree Pathogen Phytophthora plurivora. Genome Biol Evol. 2018 Sep 1;10(9):2432-2442.doi: 10.1093/gbe/evy162. PubMed PMID: 30060094; PubMed Central PMCID: PMC6152947. [#Joint first author] [IF: 3.417].
Sinha, R., M. M. C, Raghwan, S. Das, S. Das, M. Shadab, R. Chowdhury, S. Tripathy* and N. Ali* (2018). “Genome Plasticity in Cultured Leishmania donovani: Comparison of Early and Late Passages.” Frontiers in Microbiology 9(1279). [IF:5.64]
Sheikh, L., S. Sinha, Y. N. Singhababu, V. Verma, S. Tripathy and S. Nayar (2018). “Traversing the profile of biomimetically nanoengineered iron substituted hydroxyapatite: synthesis, characterization, property evaluation, and drug release modeling.” RSC Advances 8(35): 19389-19401. [IF: 3.36]
Elliott M, Yuzon J, C MM, Tripathy S, Bui M, Chastagner GA, Coats K, Rizzo DM, Garbelotto M, Kasuga T. Characterization of phenotypic variation and genome aberrations observed among Phytophthora ramorum isolates from diverse hosts. BMC Genomics. 2018 May 2;19(1):320. doi: 10.1186/s12864-018-4709-7. PubMed PMID: 29720102; PubMed Central PMCID: PMC5932867 [IF: 3.969]
Dey T, Saville A, Myers K, Tewari S, Cooke DEL, Tripathy S, Fry WE, Ristaino JB, Guha Roy S. Large sub-clonal variation in Phytophthora infestans from recent severe late blight epidemics in India. Sci Rep. 2018 Mar 13;8(1):4429. doi: 10.1038/s41598-018-22192-1. [IF: 5.133]
Panda A, Sen D, Ghosh A, Gupta A, C MM, Prakash Mishra G, Singh D, Ye W, Tyler BM, Tripathy S*. EumicrobeDBLite: a lightweight genomic resource and analytic platform for draft oomycete genomes. Mol Plant Pathol. 2018 Jan;19(1):227-237. doi: 10.1111/mpp.12505. Epub 2017 Jan 3. [IF: 5.663]
2017
Majumder R, Sheikh L, Naskar A, Vineeta, Mukherjee M, Tripathy S*. Depletion of Cr(VI) from aqueous solution by heat dried biomass of a newly isolated fungus Arthrinium malaysianum: A mechanistic approach. Sci Rep. 2017 Sep 12;7(1):11254. doi: 10.1038/s41598-017-10160-0.[IF: 5.133]
2016
Mukherjee S, Chandrababunaidu MM, Panda A, Khowala S, Tripathy S*. Tricking Arthrinium malaysianum into Producing Industrially Important Enzymes Under 2-Deoxy D-Glucose Treatment. Front Microbiol. 2016 May 13;7:596. doi: 10.3389/fmicb.2016.00596. eCollection 2016. [IF: 5.64]
Mohan A, Singh RS, Kumari M, Garg D, Upadhyay A, Ecelbarger CM, Tripathy S, Tiwari S. Urinary Exosomal microRNA-451-5p Is a Potential Early Biomarker of Diabetic Nephropathy in Rats. PLoS One. 2016 Apr 21;11(4):e0154055. doi: 10.1371/journal.pone.0154055. eCollection 2016. [IF: 3.24]
Sheikh L, Tripathy S, Nayar S, 2016. Biomimetic matrix mediated room temperature synthesis and characterization of nano-hydroxyapatite towards targeted drug delivery. RSC Advances 6, 62556-71 [IF: 3.3]
2015
Mathu Malar Chandrababunaidu, Deeksha Singh, Diya Sen, Sushma Bhan, Subhadeep Das, Akash Gupta, Siba Prasad Adhikary, Sucheta Tripathy* (2015) Draft Genome Sequence of Tolypothrix boutellei Strain VB521301. Genome announcements 3: 02. [IF: 1.44]
Diya Sen, Mathu Malar Chandrababunaidu, Deeksha Singh, Neha Sanghi, Arpita Ghorai, Gyan Prakash Mishra, Madhavi Madduluri,Siba Prasad Adhikary, Sucheta Tripathy* (2015) Draft Genome Sequence of the Terrestrial Cyanobacterium Scytonema millei VB511283, Isolated from Eastern India. Genome announcements 3: 03. [IF: 1.44]
Sourav Bhattacharyya, Mathu Malar Chandrababunaidu, Deeya Sen, Arijit Panda, Arpita Ghorai, Sushma Bhan, Neha Sanghi, Sucheta Tripathy* (2015) Draft Genome Sequence of Exopolysaccharide-Producing Cyanobacterium Aphanocapsa montana BDHKU 210001. Genome announcements 3: 03. [IF: 1.44]
Deeksha Singh, Mathu Malar Chandrababunaidu, Arijit Panda, Diya Sen, Sourav Bhattacharyya, Siba Prasad Adhikary, Sucheta Tripathy* (2015) Draft Genome Sequence of Cyanobacterium Hassallia byssoidea Strain VB512170, Isolated from Monuments in India. Genome announcements 3: 03. [IF: 1.44]
Mathu Malar Chandrababunaidu, Diya Sen, Sucheta Tripathy* (2015) Draft Genome Sequence of Filamentous Marine Cyanobacterium Lyngbya confervoides Strain BDU141951. Genome announcements 3: 03. [IF: 1.44]
Subhadeep Das, Deeksha Singh, Madhavi Madduluri, Mathu Malar Chandrababunaidu, Akash Gupta, Siba Prasad Adhikary, Sucheta Tripathy* (2015) Draft Genome Sequence of Bioactive-Compound-Producing Cyanobacterium Tolypothrix campylonemoides Strain VB511288. Genome announcements 3: 04. [IF: 1.44]
Abhishek Das, Arijit Panda, Deeksha Singh, Mathu Malar Chandrababunaidu, Gyan Prakash Mishra, Sushma Bhan, Siba Prasad Adhikary, Sucheta Tripathy* (2015) Deciphering the Genome Sequences of the Hydrophobic Cyanobacterium Scytonema tolypothrichoides VB-61278. Genome announcements 3: 04. [IF: 1.44]
2014
Bhowmick S, Malar M, Das A, Kumar Thakur B, Saha P, Das S, Rashmi HM, Batish VK, Grover S, Tripathy S*. Genome announcements 2014 Dec 24;2(6). pii: e01326-14. doi: 10.1128/genomeA.01326-14. [IF: 1.44]
A Tale of Effectors; Their Secretory Mechanisms and Computational Discovery in Pathogenic, Non-Pathogenic and Commensal Microbes. S Bhowmick, S Tripathy* – Mol Biol, 2014.
PRODUCTS
Genome Annotator Lite -> https://hub.docker.com/r/cglabiicb/gal/: A software package to analyze and visualize the genome in a database
www.eumicrobedb.org -> A complete resource for oomycetes genomes
http://bgagenomics.iicb.res.in -> A comprehensive resource for all completely sequenced Cyanobacterial genomes.
OmicsPCA -> Quantitative integration and analysis of multiple omics assays from heterogeneous samples
(https://bioconductor.org/packages/release/bioc/html/OMICsPCA.html)SigFeature -> Significant feature selection using SVM-RFE & t-statistic
(https://www.bioconductor.org/packages/devel/bioc/html/sigFeature.html
Page updated
Google Sites
Report abuse