Lab Retreat 2023: Math Models for Data Science

Date: August 7 (Mon) - 9 (Wed), 2023

Venue: Amanohashidate, Kyoto Prefecture

• Yosanosou (よさの荘, 京都府宮津市杉末1516-2)

Purpose: Share our knowledge and exchange our ideas within/outside of our laboratory.

Organizers: Mathematical Informatics Lab @ NAIST-IS, Data-Driven Biology Lab @ NAIST-BS, Computational Behavioral Neuroscience Lab @ NAIST-IS, Maruno Lab @ Kyoto WU, Dept Biomedical Data Science @ Fujita Health U

Sponsors: JST-Moonshot, JSPS-KAKENHI, NAIST-NaraMed joint project

Summary: 

Some give a tutorial lecture on a topic related to his/her research.

Each of the other attendees gives a lecture presentation on his/her own research.

If you are assigned to one of the poster sessions, please prepare your poster in B1 size.  

Every student is required to submit a report on your/others' presentation to the supervisor after the lab retreat.

Travel Information:

A chartered bus

Time Table:

[Aug 7 (2)]

7:30 departure at NAIST (via Kita-Ikoma sta, Takanohara sta, Nishiyama-Tennozan sta)

10:15 arrival at Amanohashidate

10:25 opening (Kazushi Ikeda @ MI)

10:30-11:40 oral session 1 (30 min x 1, 20 min x 2) @ Room 1

• Prof Katsuyuki Kunida @ FHU: Small data analysis for multivariate data in medicine and biology

• Zihao Yu @ MI: Processing neuroimaging data from miniature CMOS-based devices using autoencoders

• Tomohiro Kinugasa @ D2B/FHU: Development of a data-driven method for estimating metabolite-enzyme networks

11:50-12:20 flash talks for poster session 1  (90 sec x 14)

12:30-17:00 lunch & free discussion

18:00-19:30 dinner 

19:30-22:00 poster session 1 @ Room 2

• Shahoor Kausmally @ MI: Functional categories of code links with programming expertise and neural efficiency

• Koki Kishishita @ MI: Analysis of differences in graph neural network structures

• Li Zhongluo @ MI: Temporal attention for robust multiple object pose tracking

• Brian Godwin Lim @ MI:  Linear filtering factor model for stock price movements

• Benedict Tiu @ MI: Twitter-based metrics for Philippine macroeconomic monitoring

• Harun H. Kabalika @ MI: Mathematical models for the long-term impacts of control strategies on the dynamics of Onchocerciasis in areas co-infected with Loiasis

• Dayta Dominic Bagus @ MI: Nonparametric topics over time and space

• Don Saldajeno @ MI: Prediction of triple-negative breast cancer (TNBC) patient response to chemotherapy using time series cytokine expression data

• Yulun Gao @ CBNS: Rule learning measurement using game ”understand” for schizotypy

• Mohiuddin Saifullah @ D2B: Advanced deep CNN models for brain tumor identification and grading from MRI scan: Real-world user interface development

• Yufei Wu @ D2B: Motion triggered average analysis for pseudo-simultaneous measurement of molecular activities

• Haruna Tagawa @ D2B: Glioma cell motility modeling and analysis

• Yassin Terki @ D2B: Estimation of estrous cycle from mouse images using convolutional neural network

• Misaki Abe @ KWU: Body parts tracking for the horse toward quantitative analysis of horse-human interaction

[Aug 8 (3)]

7:00-8:30 breakfast

9:00-9:15 greetings (Yuichi Sakumura @ D2B, Jun Yoshimoto @ FHU, Yuki Maruno @ KWU)

9:30-10:50 oral session 2 (20 min x 4) @ Room 1

• Yuki Ura @ MI: Object behavior embedding from videos

• Chen Tien-Hao @ MI: Omics-data analysis of subtyping delirium

• Mario Eduardo Aburto Gutierrez @ MI: Information theory for multitask reinforcement learning

• Zhe Xu @ D2B: Estimation of enzyme inhibition patterns that promote axon elongation by KSFS

11:00-11:25 flash talks for poster session 2 (90 sec x 13)

11:30-17:00 lunch & free discussion

18:00-19:30 dinner

19:30-22:00 poster session 2 @ Room 2

• Li Shanglin @ CNS/MI: Geometric deep learning for generalization across domain-specific label distributions

• Jianna Braza @ MI: A framework for dynamic factor modeling

• Marin Mikami @ MI: Multimodal deep learning in dog emotion estimation

• Rikito Endo @ MI: Evaluation of the passes in the football game

• Kaito Ozawa @ MI: Zero/few-shot classification of dog emotions from images

• Hideki Hayashi @ MI: Modeling mobility with hypergraph

• Kazuki Mizoguchi @ MI: Estimation of biological signals as a model of emotional responses to visual and auditory stimuli

• Kotaro Asakawa @ D2B: Disease diagnostic performance of a simple detector of exhaled VOCs

• Takeru Hamada @ D2B: Quantitative mathematical model of cell motility responsible for angiogenesis

• Kenta Nakayama @ D2B: Time generation by cell populations in somitogenesis

• Hayate Segawa @ D2B: Computational fluid dynamics analysis in Kupffer's vesicles

• Nao Osumi @ D2B: Estimation of interactions between Rho GTPases using simultaneous activity time series

• Nanako Miyai @ KWU: Canine emotion estimation based on posture analysis with DeepLabCut

[Aug 9 (4)]

7:00-8:30 breakfast

8:55-9:15 greetings (Takatomi Kubo @ MI, Toshiya Kokaji @ D2B, Chie Hieida @ MI, Renzo Tan @ MI)

9:15-10:55 oral session 3 (20 min x 5) @ Room 1

• Koya Nakamatsu @ D2B: Chromatin accessibility and gene expression analysis of neuronal differentiation of Phc1 knockout mice

• Andres Mohali @ MI: Analyzing mice social behavior after deletion of chromosome 15

• Igor Zavialov @ MI: Stability analysis of a financial system

• Masato Uehara @ CNS/MI: Development of an easy-to-use brain-computer interface using optically pumped magnetometer

• Mark Christian Guinto @ FHU: Predictive maps

11:00-16:00 lunch & free discussion

16:00 departure at Amanohashidate

Meeting Points:

7:30 NAIST Main Gate (map)

Note:

Link to past lab retreats