Articles

• YC Fan, YC Fong, CT Kuo, CW Li, WY Chen, JD Lin, F Burtin, M Linnebacher, QT Bui, KD Lee, YC Tsai. Tumor-derived interleukin-1 receptor antagonist exhibits immunosuppressive functions and promotes pancreatic cancer. Cell and Bioscience, 13(147), August, 2023. (Rank: Q1, BIOCHEMISTRY & MOLECULAR BIOLOGY , 5-yr. IF=7.9).

• D G Loredan, J C Devlin, K A Lacey, N Howard, Z Chen, E E Zwack, JD Lin, K V Ruggles, K M Khanna, V J Torres, P Loke*. Single-cell analysis of CX3CR1+ cells reveals a pathogenic role for BIRC5+ myeloid proliferating cells driven by Staphylococcus aureus leukotoxins. Journal of Immunology, 211, July 2023. (Rank: Q2, IMMUNOLOGY, 5-yr. IF=5.2; Citations≥1).

• SY Chen, CT Chu, ML Yang, JD Lin, CT Wang, CH Lee, IC Lin, AL Shiau, P Ling, CL Wu. Amelioration of murine colitis by attenuated Salmonella choleraesuis encoding interleukin-19. microorganisms, 11(6), June 2023. (Rank: Q2, MICROBIOLOGY, 5-yr. IF=4.8; Citations≥1).

• YH Chen*, F Yeung*, KA Lacey, K Zaldana, JD Lin#, GCW Bee, C McCauley, RS Barre, SH Liang, CB Hansen, AE Downie, K Tio, JN Weiser, VJ Torres, RJ Bennett, P Loke, AL Graham, K Cadwell. Rewilding of laboratory mice enhances granulopoiesis and immunity through intestinal fungal colonization. Science Immunology, 8(84), June 2023. (Rank: Q1, IMMUNOLOGY, 5-yr. IF=22, Citations≥8), *Co-first Author, #4th Author.  

• P Loke*, JD Lin*. Redefining inflammatory macrophage phenotypes across stages and tissues by single-cell transcriptomics. Science Immunology, 7(70), April 2022. (Rank: Q1, IMMUNOLOGY, 5-yr. IF=22, Citations≥11), *Corresponding Author. 

• JD Lin*, P Loke*. Helminth infections and cardiovascular diseases: A role for the microbiota and Møs? Journal of Leukocyte Biology, 110(6), September 2021. (Rank: Q2, HEMOTOLOGY, 5-yr. IF=5.4, Citations≥4), *Corresponding Author. 

• C McElrath, V Espinosa, JD Lin#, J Peng, R Sridhar, O Dutta, HC Tseng, S V Smirnov, H Risman, M J Sandoval, V Davra, YJ Chang, B P Pollack, R B Birge, M Galan, A Rivera, J E Durbin, S V Kotenko. Critical role of interferons in gastrointestinal injury repair. Nature Communication, 12(1), May 2021. (Rank: Q1, MULTIDISPLINARY SCIENCES, 5-yr. IF=17, Citations≥51), #3rd Author.  

• J C Devlin*, J Axelrad*, A M Hine*, S Chang, S Sarkar, JD Lin#, K V Ruggles, D Hudesman, K Cadwell, P Loke. Single-cell transcriptional survey of ileal-anal pouch immune cells from ulcerative colitis patients. Gastroenterology, 160(5), April 2021. (Rank: Q1, GASTROENTEROLOGY & HEPATOLOGY, 5-yr. IF=25.8, Citations≥38), *Co-first Author. #4th Author.  

• JD Lin, J C Devlin, F Yeung, C McCauley, J M. Leung, YH Chen, A Cronkite, C Hansen, C Drake-Dunn, K V. Ruggles, K Cadwell, A L Graham, P Loke. Rewilding Nod2 and Atg16l1 mutant mice uncover genetic and environmental contributions towards variation in microbial responses and immune cell composition. Cell Host & Microbe, 27(5), May 2020. (Rank: Q1, MICROBIOLOGY, 5-yr. IF=25.7, Citations≥64) 

• F Yeung*, YH Chen*, JD Lin*, J M Leung, C McCauley, J C. Devlin, C Hansen, A Cronkite, Z Stephens, C Drake-Dunn, Y Fulmer, B Shopsin, K V. Ruggles, J L. Round, P Loke, A L Graham, K Cadwell. Altered immunity of laboratory mice in the natural environment is associated with fungal colonization. Cell Host & Microbe, 27(5), May, 2020. (Rank: Q1, MICROBIOLOGY, 5-yr. IF=25.7, Citations≥116); *Co-first Author.

• JD Lin, H Nishi, J Poles, X Niu, C Mccauley, K Rahman, E J. Brown, S T Yeung, N Vozhilla, A Weinstock, S Ramsey, E A Fisher and P Loke. Single-cell analysis of fate-mapped macrophages reveals heterogeneity, including stem-like properties, during atherosclerosis progression and regression. JCI insight, 4 (4), February, 2019. (Rank: Q1, MEDICINE, RESEARCH & EXPERIMENTAL, 5-yr. IF=8.6; Citations≥269) (Top 1% cited in "Clinical Medicine" field)

• U M Gundra, N M Girgis, M A Gonzalez, MS Tang, H J P Van Der Zande, JD Lin, M Ouimet, L J Ma, J Poles, N Vozhilla, E A Fisher, K J Moore, P Loke. Vitamin A mediates conversion of monocyte-derived macrophages into tissue-resident macrophages during alternative activation. Nature Immunology, 18 (6), June 2017. (Rank: Q1, IMMUNOLOGY, 5-yr. IF=29.6; Citations≥142)

• JD Lin, N Feng, A Sen, M Balan, HC Tseng, C McElrath, S V Smirnov, J Peng, L L Yasukawa, R K. Durbin, J E Durbin, H B Greenberg and S V. Kotenko. Distinct roles of type I and type III interferons in intestinal immunity to homologous and heterologous rotavirus infection. PLoS Pathog., 12 (4), April, 2016. (Rank: Q1, MICROBIOLOGY, 5-yr. IF=6.7; Citations≥176)

Conference Issues

• JD Lin, TY Chou, YZ Ye, IJ Lin, CJ Lien, ZY Wang, CH Yang, PA Chao, YT Chen, P Loke. Single-cell multi-omics analysis reveals serum amyloid A3 restrains alternative activations in macrophages derived from different origins. Journal of Immunology, 210 (1 Supplement), May 2023. 

• JD Lin, TY Chou, CH Yang, PA Chao, YT Chen, P Loke. Single-cell multi-omic analysis identifies heterogeneity and distinct features in fate-mapped tissue-resident alternatively activated macrophages. Journal of Immunology, 210 (1 Supplement), May 2022. 

• Jian-Da Lin, Frank Yeung, Cooper Devlin, Ying-Han Chen, Caroline McCauley, Alex Cronkite, Jacqueline M. Leung, Andrea L. Graham, Ken H. Cadwell, P’ng Loke. Integration of multi-omics data from re-wilded laboratory mice to identify key parameters that determine immune heterogeneity and activation. J. Immunol., 202 (1 Supplement), May, 2019.

• Jian-Da Lin, Hitoo Nishi, Jordan Poles, Xiang Niu, Caroline Mccauley, Karishma Rahman, Ashley Hine, Nikollaq Vozhilla, Edward A. Fisher and P’ng Loke. Heterogeneity of plaque macrophages derived from CX3CR1+ monocyte precursors in atherosclerosis progression and regression at a single-cell level. J. Immunol., 200 (1 Supplement), May, 2018.

• Jian-Da Lin, Jianya Peng, Constance McElrath, Hsiang-Chi Tseng, Ningguo Feng, Adrish Sen, Russell K. Durbin, Joan E. Durbin, Harry B. Greenberg and Sergei V. Kotenko. Role of IFN-lamda in the pathogenesis of heterologous rotavirus infection in suckling mice. Cytokine, Volume 87, Page 94, November, 2016.

• Constance McElrath, Jian-Da Lin, Jianya Peng, Raghavendra Sridhar, Vanessa Espinosa, Orchi Dutta, Hsiang-Chi Tseng, Heidi Risman, Marvin Sandoval, Mark Galan, Joan E. Durbin, Amazrliz Rivera and Sergei V. Kotenko. Role of IFNs in gastro-intestinal mucosal inflammation. Cytokine, Volume 87, Page 141, November, 2016. 

• l  Marvin Sandoval, Jian-Da Lin, Qing Li, Heidi Risman, Russell K. Durbin, Sergei V. Kotenko and Joan E. Durbin. IFN-lamda production is mediated by epithelial cell in the small intestine and CD8 alpha dendritic cells in the spleen in vivo. Cytokine, Volume 87, Page 118, November, 2016.

• Jian-Da Lin, Ningguo Feng, Adrish Sen, Murugabaskad Balan, Hsiang-Chi Tseng, Constance McElrath, Russell K. Durbin, Joan E. Durbin, Harry B. Greenberg, Sergei V. Kotenko. Role of type I and type III interferons in intestinal immunity to homologous and heterologous rotavirus infection. Cytokine, Volume 76, Issue 1, November, 2015.

• Marvin Sandoval, Troy Cline, Jian-Da Lin, Sergei V. Kotenko, Russell K. Durbin, Joan E. Durbin. Resistance to respiratory syncytial virus replication is STAT1 and STAT2 dependent, but I interferon independent. Cytokine, Volume 63, Issue3, September, 2013.