研究成果

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プレプリント・投稿中

• Wu J, Meng L, Gaïa M, Hikida H, Okazaki Y, Endo H, and Ogata H. Gene transfer among viruses substantially contributes to gene gain of giant viruses. bioRxiv, doi.org/10.1101/2023.09.26.559659 [Link]

• Yang Q, Yang Y, Xia J, Fukuda H, Okazaki Y, Nagata T, Ogata H, and Endo H. Characterization of sinking and suspended microeukaryotic communities in spring Oyashio waters. bioRxiv, doi.org/10.1101/2023.09.13.557659v1 [Link]

査読付き論文

2024

• Ban H., Endo H., The EukBank Team, Kuwata A., Ogata H. Global distribution and diversity of marine Parmales. Microbes Environ., 29, 1, ME23093 (2023) [Link]

DOI: 10.1264/jsme2.ME23093

2023

• Meng L, Delmont TO, Gaia M, Pelletier E, Fernandez-Guerra A, Chaffron S, Neches RY, Wu J, Kaneko H, Endo H, and Ogata H. Genomic adaptation of giant viruses in polar oceans. Nature Commun. 14, 6233 (2023)

DOI: 10.1038/s41467-023-41910-6

• Kaneko H, Endo H, Henry N, Berney C, Mahé F, Poulain J, Labadie K, Beluche O, Hourany R EI, Tara Oceans coordinators, Chaffron S, Wincker P, Nakamura R, Karp-Boss L, Boss E, Bowler C, de Vargas C, Tomii K, and Ogata H. Predicting global distributions of eukaryotic plankton communities from satellite data.  ISME Commun., 3, 101 (2023)

DOI: 10.1038/s43705-023-00308-7

• Pascoal F, Tomasino M, Piredda R, Quero G, Torgo L, Poulain J, Galand P, Fuhrman J, Mitchell A, Tinta T, Dermastia T, Fernandez-Guerra A, Vezzi A, Logares R, Malfatti F, Endo H, Dąbrowska AM, Pascale FD, Sanchez P, Henry N, Fosso B, Wilson B, Toshchakov S, Ferrant G, Grigorov I, Vieira F, Costa R, Pesant S, and Magalhães C. Inter-comparison of marine microbiome sampling protocols. ISME Commun., 3, 84 (2023)

DOI: 10.1038/s43705-023-00278-w

• Rigonato J, Budinich M, Murillo A.A, Brandão M.C, Pierella J.J, Soviadan Y.D, Gregory A.C, Endo H, Kokoszka F, Vik D, Henry N, FrémontP, Labadie K, Zayed A.A, Dimier C, Picheral M, Searson S, Poulain J, Kandels S, Pesant S, Karsenti E, The Tara Oceans coordinators, Bork P, Bowler C, Chaffron S, de Vargas C, Eveillard D, Gehlen M, Iudicone D, Lombard F, Ogata H, Stemmann L, Sullivan M.B, Sunagawa S, Wincker P, and Jaillon O. Ocean-wide comparisons of mesopelagic planktonic community structures. ISME Commun., 3, 83 (2023)

DOI: 10.1038/s43705-023-00279-9

• Ban H, Sato S, Yoshikawa S, Yamada K, Nakamura Y, Ichinomiya M, Sato N, Blanc-Mathieu R, Endo H, Kuwata A, and Ogata H. Genome analysis of Parmales, a sister group of diatoms, reveals the evolutionary specialization of diatoms from phago-mixotrophs to photoautotrophs. Commun. Biol., 6, 697 (2023) 

DOI: 10.1038/s42003-023-05002-x

• Okazaki Y, Nguyen TT, Nishihara A, Endo H, Ogata H, Nakano S, Tamaki H. A fast and efficient method to co-extract DNA and RNA from an environmental microbial sample. Microb. Environ., 38, ME22102 (2023)

DOI: 10.1264/jsme2.ME22102

• Endo H, Umezawa Y, Takeda S, and Suzuki K. Haptophyte communities along the Kuroshio Current reveal their geographical sources and ecological traits. Mol. Ecol., 31, 110–123 (2023)

DOI: 10.1111/mec.16734

2022

• Xia J, Kameyama S, Prodinger F, Cho K-H, Jung J, Yang E-J, Ogata H, and Endo H. Tight association between microbial eukaryote and giant virus communities in the Arctic Ocean. Limnol. Oceanogr., 67, 1343–1356 (2022)

DOI: 10.1002/lno.12086

• Xu Z, Cheung S, Endo H, Xia X, Wu W, Chen B, Ho NHE, Meng Li, and Hongbin Liu. Disentangling the ecological processes shaping the latitudinal pattern of phytoplankton communities in the Pacific Ocean. mSystems, 7, e01203-21 (2022)

DOI: 10.1128/msystems.01203-21

2021

• Prodinger F, Endo H, Takano Y, Li Y, Tominaga K, Isozaki T, Blanc-Mathieu R, Gotoh Y, Tetsuya H, Taniguchi E, Nagasaki K, Yoshida T, and Ogata H. Year-round dynamics of amplicon sequence variant communities differ among eukaryotes, Imitervirales, and prokaryotes in a coastal ecosystem. FEMS Microbiol. Ecol., 97, fiab167 (2021)

DOI: 10.1093/femsec/fiab167

• Shiozaki T, Hashihama F, Endo H, Ijichi M, Takeda M, Makabe A, Fujiwara A, Noshino S, and Harada N. Assimilation and oxidation of urea-derived nitrogen in the summer Arctic Ocean. Limnol. Oceanogr., 66, 4159– 4170 (2021) 

DOI: 10.1002/lno.11950

• Zhang R, Endo H, Takemura M, and Ogata H. RNA-seq of the medusavirus suggests remodeling of the host nuclear environment at an early infection stage. Microbiol. Spectr., 9, e00064-21 (2021)

DOI: 10.1128/Spectrum.00064-21

• Cheung S, Zehr JP, Xia X, Tsurumoto C, Endo H, Nakaoka S, Mark W, Suzuki K, and Liu H. Gamma4: a genetically versatile Gammaproteobacterial nifH phylotype that is widely distributed in the North Pacific Ocean. Environ. Microbiol. 23, 4246–4259 (2021)

DOI: 10.1111/1462-2920.15604

• Kijima S, Delmont T.O, Miyazaki U, Gaia M, Endo H, and Ogata H. Discovery of viral myosin genes with complex evolutionary history within plankton. Front. Microbiol., 12, 683294 (2021)

DOI: 10.3389/fmicb.2021.683294

• Meng L, Endo H, Blanc-Mathieu R, Hernández-Velázquez R, Kaneko H, and Ogata H. Quantitative assessment of nucleocytoplasmic large DNA virus and host interactions predicted by co-occurrence analyses. mSphere, 6, e01298-20 (2021)

DOI: 10.1128/mSphere.01298-20

• Yoshida K, Zhang R, Garcia K, Endo H, Gotoh Y, Hayashi T, Takemura M, and Ogata H. Draft Genome Sequence of Medusavirus stheno, a new member of “Medusaviridae” Isolated from the Tatakai River of Uji, Japan. Microbiol. Resour. Announc., 10(1), e01323-20 (2021)

DOI: 10.1128/MRA.01323-20

• Kaneko H, Blanc-Mathieu R, Endo H, Chaffron S, Delmont TO, Gaia M, Henry N, Hernández-Velázquez R, Nguyen CH, Mamitsuka H, Forterre P, Jaillon O., de Varga C, Sullivan B, Suttle CA, Guidi L, and Ogata H. Eukaryotic virus composition can predict the efficiency of carbon export in the global ocean. iScience, 24, 102002 (2021)

DOI: 10.1016/j.isci.2020.102002

[Press release] [Link to the previous version]

• =Kawasaki T, =Endo H*, Ogata H, Chatchawankanphanich O, and Yamada T. The complete genomic sequence of a novel myovirus RP13 infecting Ralstonia solanacearum, the causative agent of bacterial wilt. Arch. Virol., 166, 651–654 (2021) [Link] *co-first author

DOI: 10.1007/s00705-020-04893-z

2020

• Nishiyama H, Endo H, Blanc-Mathieu R, and Ogata H. Ecological dynamics of temperate bacteriophages in the inflammatory bowel disease affected gut. Microorganisms, 8(11), 1663 (2020)

DOI: 10.3390/microorganisms8111663

• Endo H, Blanc-Mathieu R, Li Y, Salazar G, Henry N, Labadie K, de Vargas C, Sullivan B.M, Bowler C, Wincker P, Karp-Boss L, Sunagawa S, and Ogata H. Biogeography of marine giant viruses reveals their interplay with eukaryotes and ecological functions. Nat. Ecol. Evol., 4, 1639–1649 (2020)

DOI: 10.1038/s41559-020-01288-w

[Press release] [Blog] [Free Article View]

• Cheung S, Nitanai R, Tsurumoto C, Endo H, Nakaoka S, Cheah W, Lorda J.F, Xia Z, Liu H, and Suzuki K. Physical forcing controls the basin-scale occurrence of nitrogen-fixing organisms in the North Pacific Ocean. Global Biogeochem. Cy., 34, e2019GB006452 (2020)

DOI: 10.1029/2019GB006452

• Prodinger F, Endo H, Gotoh, Y, Li Y, Morimoto D, Omae, K, Tominaga K, Blanc-Mathieu, R, Takano Y, Hayashi T, Nagasaki K, Yoshida T, and Ogata H. An optimized metabarcoding method for Mimiviridae. Microorganisms, 8(4), 506 (2020)

DOI: 10.3390/microorganisms8040506

2019

• Aramaki T, Blanc-Mathieu R, Endo H, Ohkubo K, Kanehisa M, Goto S, and Ogata H. KofamKOALA: KEGG ortholog assignment based on profile HMM and adaptive score threshold. Bioinformatics, 36, 2251–2252 (2019)

DOI: 10.1093/bioinformatics/btz859

• Ibarbalz F.M, Henry N, Brandão M.C, Martini S, Busseni G, Byrne H, Coelho L.P, Endo H, Gasol J.M, Gregory A.C, Mahé F, Rigonato J, Royo-Llonch M, Salazar G, Sanz-Sáez I, Scalco E, Soviadan D, Zayed A, Zingone A, Labadie K, Ferland J, Marec C, Kandels S, Picheral M, Dimier C, Poulain J, Pisarev S, Carmichael M, Pesant S, Tara Oceans Coordinators, Babin M, Boss E, Iudicone D, Jaillon O, Acinas S.G, Ogata H, Pelletier E, Stemmann L, Sullivan M.B, Sunagawa S, Bopp L, de Vargas C,  Boss L.K, Wincker P, Lombard F, Bowler C, and Zinger L. Global trends in marine plankton diversity across kingdoms of life. Cell, 179(5), 1084–1097 (2019)

DOI: 10.1016/j.cell.2019.10.008

• Li Y, Endo H, Goto Y, Watai H, Ogawa N, Blanc-Mathieu R, Yoshida T, and Ogata H. The earth is small for “leviathans”: long distance dispersal of giant viruses across aquatic environments. Microbes Environ., doi:10.1264/jsme2.ME19037 (2019)

DOI: 10.1264/jsme2.ME19037

• Endo H, and Suzuki K. Spatial variations in community structure of haptophytes across the Kuroshio front in the Tokara Strait. In: Kuroshio Current: Physical, Biogeochemical and Ecosystem Dynamics (eds.Nagai T, Saito H, Suzuki K, and Takahashi M), AGU Geophysical Monograph Series, AGU-Wiley, doi.org/10.1002/9781119428428.ch13, (2019)

DOI: 10.1002/9781119428428.ch13

• Yan D, Endo H, and Suzuki K. Increased temperature benefits growth and photosynthetic performance of the sea ice diatom Nitzschia cf. neglecta (Bacillariophyceae) isolated from Lake Saroma, Hokkaido, Japan. J. Phycol., 55(3), 700–713 (2019)

DOI: 10.1111/jpy.12846

• Xia X, Cheung, S, Endo H, Suzuki K, and Liu H.Latitudinal and vertical variations of Synechococcus assemblage composition along 170°W transect from the South Pacific to the Arctic Ocean. Microb. Ecol., 77(2), 333–342 (2019)

DOI: 10.1007/s00248-018-1308-8

2018

• Li Y, Hingamp P, Watai H, Endo H, Yoshida T, and Ogata H. Degenerate PCR primers to reveal the diversity of giant viruses in coastal waters. Viruses, 10, 496 (2018)

DOI: 10.3390/v10090496

• Endo H, Ogata H, and Suzuki K. Contrasting biogeography and diversity patterns between diatoms and haptophytes in the central Pacific Ocean. Sci. Rep., 8, 10916 (2018)

DOI: 10.1038/s41598-018-29039-9

• Yoshida K., Endo H, Lawrenz E, Isada T, Hooker SB, Prášil O, Suzuki K. Community composition and photophysiology of phytoplankton assemblages in coastal Oyashio waters of the western North Pacific during early spring, Estuar. Coast. Shelf Sci., 212, 80–94 (2018)

DOI: 10.1016/j.ecss.2018.06.018

2017

• Endo H, Hattori H, Mishima T, Hashida G, Sasaki H, Nishioka J, and Suzuki K. Phytoplankton community responses to iron and CO2 enrichment in different biogeochemical regions of the Southern Ocean. Pol. Biol., 40, 2143–2159 (2017)

DOI: 10.1007/s00300-017-2130-3

2016

• Endo H, Sugie K, Yoshimura T, and Suzuki K. Response of spring diatoms to CO2 availability in the western North Pacific as determined by next-generation sequencing. PLOS ONE, 11, e0154291 (2016)

DOI: 10.1371/journal.pone.0154291

2015

• Endo H, Sugie K, Yoshimura T, and Suzuki K. Effects of CO2 and iron availability on rbcL gene expression in Bering Sea diatoms. Biogeosciences, 12, 2247−2259 (2015)

DOI: 10.5194/bg-12-2247-2015

2014

• Yoshimura T, Sugie K, Endo H, Suzuki K, Nishioka J, and Ono T. Organic matter production response to CO2 increase in open subarctic plankton communities: Comparison of six microcosm experiments under iron-limited and -enriched bloom condition. Deep-Sea Res. I., 94, 1−14 (2014)

DOI: 10.1016/j.dsr.2014.08.004

2013

• Sugie K, Endo H, Suzuki K, Nishioka J, and Yoshimura T. Synergistic effects of pCO2 and iron availability on nutrient consumption ratio of the Bering Sea phytoplankton community. Biogeosciences, 10, 6309−6321 (2013)

DOI: 10.5194/bg-10-6309-2013

• Endo H, Yoshimura T, Kataoka T, and Suzuki K. Effects of CO2 and iron availability on phytoplankton and eubacterial community compositions in the northwest subarctic Pacific. J. Exp. Mar. Biol. Ecol., 439, 160−175 (2013)

DOI: 10.1016/j.jembe.2012.11.003

和文誌

• 遠藤寿「分子生物学手法を用いた海洋生物地球化学循環の研究」 海洋化学研究, (財)海洋化学研究所, Vol. 36, Number 2, pp. 92–100 (2023) [Link]

• 遠藤寿「スポットライト：イケメン&イケジョ VOL.57」日本微生物生態学会誌,  Vol. 38, Number 2, pp. 72–73 (2023) [Link]

• 遠藤寿 「小さな植物プランクトンの大いなる可能性」『14 歳の世渡り術 最前線に立つ研究者 15 名の白熱!講義 生きものは不思議』河出書房新社, ISBN978–309–61748–0, pp. 108–125 (2023) [Link]

• 遠藤寿「海洋ウイルスと生物地球化学 海洋物質循環で暗躍する巨大ウイルスの機能解明に向けて」黄檗, 京都大学化学研究所, 通巻54号, pp. 7 (2021) [Link]

• 遠藤寿「月例卓話 メタゲノミクスを用いた大規模海洋調査」 海洋化学研究, (財)海洋化学研究所, Vol. 32, Number 2, pp. 152–156 (2019) [Link]

• 遠藤寿「リレー紹介：日本のバイオインフォマティクス研究室」日本バイオインフォマティクス学会ニュースレター, 第36号, pp. 15– 16 (2019) [Link]

• 佐々木洋, 遠藤寿「海洋プランクトンに対する海洋酸性化の影響 (特集 海洋酸性化)」 海洋と生物, 生物研究社, 通巻207号，Vol. 35 (4), pp. 323–331 (2013) [Link]

• 杉江恒二, 遠藤寿, 鈴木光次, 芳村毅「pCO2と鉄濃度の違いが夏季ベーリング海の植物プランクトン群集におけるSiとNの利用比に与える影響」 月刊海洋, 海洋出版株式会社, 通巻494号, Vol. 43 (12), pp.735–741 (2011) [Link]