Software from our lab

mitoXplorer

mitoXplorer is a visual data mining platform for exploring the dynamics of mitochondrial gene expression in a vast amount of NGS-data

AnnoMiner

AnnoMiner allows you to annotate ChIP-seq data and to perform enrichment analysis using the ENCODE/modERN resources

HH-MOTiF

HH-MOTiF finds short linear motifs (SLiMs) de novo in proteins using Hidden Markov Model (HMM) comparisons

morFeus

morFeus finds remotely conserved orthologs based on iterative, relaxed, reciprocal BLAST searches and network scoring

RNfuzzyApp

RNfuzzyApp is a R-shiny app for the differential expression and time-course analysis of RNA-seq data.

Phasik

Phasik is a novel method based on temporal network clustering to extract phases from temporal, biological data (such as time-course expression data).

TimeNexus

TimeNexus is a Cytoscape app that allows users to extract 'active' pathways across a temporal expression data set by using temporal multilayer networks.

SLiMS-TITAN

SLiMS-TITAN is a pipeline to analyze protein motif evolution in a protein structural context.

SLALOM

SLALOM is a suite of python programs for statistical analysis based on positional data in proteins and genomes

viPEr / PEANuT

viPEr and PEANuT are two Cytoscape 3 apps for focus network analysis

HMMerThread

HMMerThread is a data-resource of remotely conserved domains in protein sequences

Git-repository of the lab

check out our code on Git