Software from our lab
mitoXplorer is a visual data mining platform for exploring the dynamics of mitochondrial gene expression in a vast amount of NGS-data
AnnoMiner allows you to annotate ChIP-seq data and to perform enrichment analysis using the ENCODE/modERN resources
mitoMammal is a metabolic modeling framework for constraint-based modeling of mitochondrial metabolism for 2 species, human and mouse.
MechanoPro-DB is a database we have created to store and mine mechanical properties of proteins, such as unfolding forces and other experimentally measured protein features.
Phasik
Phasik is a novel method based on temporal network clustering to extract phases from temporal, biological data (such as time-course expression data).
TimeNexus
TimeNexus is a Cytoscape app that allows users to extract 'active' pathways across a temporal expression data set by using temporal multilayer networks.
RNfuzzyApp
RNfuzzyApp is a R-shiny app for the differential expression and time-course analysis of RNA-seq data.
HH-MOTiF finds short linear motifs (SLiMs) de novo in proteins using Hidden Markov Model (HMM) comparisons
morFeus finds remotely conserved orthologs based on iterative, relaxed, reciprocal BLAST searches and network scoring
evo-MOTiF
evo-MOTiF is a pipeline to analyze protein motif evolution in a protein structural context.
HMMerThread is a data-resource of remotely conserved domains in protein sequences
Git-repository of the lab