Publication

Articles: 

1. Gwon Mo Yang, Na Yun Kim, Yohan Song, Donghwa Chung, Hyo Jin Kim☎, Complete genome sequence of Bacillus subtilis SNUY1, a novel strain enhancing antifungal activity in edible coatings, Microbiology Resource Announcements. 2026 15:e01061-25.

2. Azma Fakhar, Muhammad Ajaz Ahmed, Na Yun Kim, Hyo Jin Kim, Tae Min Kim, Joon Weon Choi, Phenolated lignin nanoparticles with improved stability and biofunctionality: A comparative study of nanoprecipitation and solvent exchange fabrication techniques, International Journal of Biological Macromolecules. 2025 332(Pt 2):148724

3. Dong Hoon Kim, Yohan Song, Gunhyung Park, Huin Lee, Hee Chung, Hyo Jin Kim and Donghwa Chung, Effects of aging on the physicochemical, mechanical, and gas barrier properties of edible shellac–cellulose nanofiber composite films with different blending ratios, Food Engineering Progress. 2025 29(4):239-247

4. Hea Joon Kim, Min Young Kwon, Seongbong Song, Seong Won Cheon, Hyo Jin Kim☎, Engineered Lactiplantibacillus plantarum and Levilactobacillus brevis utilizing ribonucleoprotein-mediated editing for inactivation of hemolysin gene, World Journal of Biotechnology and Microbiology. 2025 41:373

5. Suk Han, Hae Won Jang, Soyoung Park, Tae Min Kim, Hyo Jin Kim☎, Unlocking the flavor potential of brewing yeast with CRISPR/Cas9 genome editing, LWT. 2025 230:118254

6. Jeong Pin Ahn, Sung Jin Moon, Migi Lee, Min Young Kwon, Ju-Yeon Pyo, Soo Chan Lee, Hyo Jin Kim☎, Engineering Polyphosphate-Accumulating Probiotics for Therapeutic Applications in Chronic Kidney Disease, Food Bioscience. 2025 68:106360

7. Jae Won Han, Nari Lee, Hea Joon Kim, Sung Jin Moon, Soo Chan Lee, Hyo Jin Kim☎, Weissella sp. SNUL2 as potential probiotics with broad-spectrum antimicrobial activities, Heliyon. 2024 10(7):e28481

8. Hye Ree Yoon§, Suk Han§, Seung Chul Shin, Su Cheong Yeom, Hyo Jin Kim☎, Improved natural food colorant production in the filamentous fungus Monascus ruber using CRISPR-based engineering, Food Res Int. 2023. 167:112651 (IF=7.425)

9. Sung Jin Moon§,☎, Junsang Hwang§, Woo Kyung Kang, Jeong-Pin Ahn, Hyo Jin Kim☎, Administration of the probiotic Lactiplantibacillus paraplantarum is effective in controlling hyperphosphatemia in 5/6 nephrectomy rat mode, Life Sciences 2022. 306:120856 (IF=6.780)

10. Hye Ree Yoon§, Danyeol Ku§, Suk Han, Seung Chul Shin, Han-Woo Kim,  Hyo Jin Kim☎, Safety evaluation of mycotoxin citrinin production from Monascus ruber through whole-genome sequencing and analytical evaluation, 3 Biotech 2022. 12:214 (IF=2.893)

11. Young-Wook Chin§, Seung Chul Shin§, Suk Han, Hae Won Jang, Hyo Jin Kim☎, CRISPR/Cas9-mediated Inactivation of arginase in a yeast strain isolated from Nuruk and its impact on the whole genome, Journal of Biotechnology 2021. 341:163-167 (IF=3.595)

12. Seongmin Shin, Mi Sun Park, Hansol Lee, Seongeun Lee, Haeun Lee, Tae Hoon Kim, Hyo Jin Kim, Global Trends in Research on Wild-Simulated Ginseng: Quo Vadis?, Forests 2021. 12:664 (IF=3.282)

13. Junsang Hwang§, Seung Chul Shin§, Jae Won Han, Sang Pil Hong, Won-Ki Min, Donghwa Chung, Hyo Jin Kim☎, Complete genome sequence of Paenibacillus xylanexedens PAMC 22703, a xylan-degrading bacterium, Marine Genomics 2021. 55:100788 (IF=2.143)

14. Seung Chul Shin☎, Woong Choi, Junhyuck Lee, Hyo Jin Kim, Han-Woo Kim☎, Evaluation of assembly methods combining long-reads and short-reads to obtain Paenibacillus sp. R4 high-quality complete genome, 3 Biotech 2020. 10:480 (IF=2.893)

15. Junsang Hwang§, Ina Bang§, Donghyuk Kim, Seung Chul Shin, Young-Wook Chin, Tae-Wan Kim, and Hyo Jin Kim☎, Genome sequence of the potential probiotic eukaryote Saccharomyces cerevisiae KCCM 51299, 3 Biotech 2020. 10:185 (IF=2.893)

16. Tae-Yong Lee, Won-Ki Min, Hyo Jin Kim☎, Jin-Ho Seo☎, Improved production of 3-hydroxypropionic acid in engineered Escherichia coli by rebalancing heterologous and endogenous synthetic patheays, Bioresource Technology 2020. 299:122600 (IF=11.889)

17. Hyo Jin Kim☎, Won-Heong Lee, Timothy Lee Turner, Suryang Kwak, Yong-Su Jin☎, An extra copy of the β-glucosidase gene improved the cellobiose fermentation capability of an engineered Saccharomyces cerevisiae strain, 3 Biotech 2019. 9:367 (IF=2.893)

18. Woong  Heo, Jun Hee Kim, Sooah Kim, Kyong Heon Kim, Hyo Jin Kim☎, Jin-Ho Seo, Enhanced production of 3-hydroxypropionic acid from glucose and xylose by alleviation of metabolic congestion due to glycerol flux in engineered Escherichia coli, Bioresource Technology 2019. 285:121320 (IF=11.889)

19. Sang-Pil Hong, Seung-Chul Shin, Woo-Kyung Kang, Young-Wook Chin, Timothy L Turner, Hyun-Wook Choi, Kyung-Mo Song and Hyo Jin Kim☎, Complete genome sequence of Leuconostoc garlicum KCCM 43211 producing exopolysaccharide, Journal of Biotechnology 2017. 246:40-44. (IF=3.595)

20. Young-Wook Chin, Woo-Kyung Kang, Hae Won Jang, Timothy L. Turner, and Hyo Jin Kim☎, CAR1 deletion by CRISPR/Cas9 reduces formation of ethyl carbamate from ethanol fermentation by Saccharomyces cerevisiae. Journal of Industrial Microbiology & Biotechnology 2016. 43(11):1517-1525. (IF=4.258)

21. So-Lim Park, So-Young Lee, Hyo Jin Kim, Seong-Il Lim, Young-Do Nam, and Il-Mo Kang. Application of clay minerals in the food industry. Economic and Environmental Geology. 2015. 48(3): 255-260.

22. Jin-Kyoung Jung, Kyung-Mo Song, Sung-Hun Yi, Hyo-Jin Kim, Young-Sook Han, and Myung-Ki Lee. Fermentation conditions for high acceptability of Korean traditional fermented beverage Kyejang. J Korean Soc Food Sci Nutr 2015. 44(1): 137-144.

23. Soo-Jeong Hong§, Hyo Jin Kim§, Jin-Woo Kim, Dae-Hee Lee and Jin-Ho Seo. Optimizing promoters and secretory signal sequences for producing ethanol from inulin by recombinant Saccharomyces cerevisiae carrying Kluyveromyces marxianus inulinase. Bioprocess Biosyst Eng 2015. 38: 263-272. (IF=3.434)

24. Sunhyun Park, Kyung-Mo Song, Hyo-Jin Kim, Bong-Soo Kim, Young Kyung Rhee and Myung-Ki Lee. Characterization and use of microbial communities in Doenjang to control the unpleasant odor of Ginkgo epicarp. Food Sci. Biotechnol.2014. 23(6): 1959-1964. (IF=3.231)

25. Hyo Jin Kim, Min-Jeong Kim, Timothy Lee Turner and Myung-Ki Lee. Pyrosequencing-based analysis of the bacterial community during fermentation of Alaska pollock sikhae: traditional Korean seafood. J Gen Appl Microbiol 2014. 60:227-233. (IF=1.356)

26. Hyo Jin Kim☎. Exploitation of reactive oxygen species by fungi: Roles in host-fungus interaction and fungal development. J Microbiol Biotechnol 2014. 24(11):1455-1463. (JMB 우수논문) (IF=3.277)

27. Myung-Ki Lee, Hyo Jin Kim, Kyung Mo Song, Sung Hoon Yi, Young-Kyoung Rhee, Sung-Won Moon, and Yu-Ri Kim. Development of primers for PCR classification of lactic acid bacteria in Kimchi based on the genes for carbohydrate metabolic pathways. Curr Top Lactic Acid Bac Probio 2014. 2(2):1-8.

28. Sunhyun Park, Min-Jeong Kim, Jiyoung Hong, Hyo-Jin Kim, Sung-Hun Yi and Myung-Ki Lee. Selection and characterization of Cheonggukjang (fast fermented soybean paste)-originated bacterial strains with a high level of S-adenosyl-L-methionine (SAMe) production and probiotics efficacy. J Med Food 2014. 17(11):1170-1176. (IF=2.542)

29. Hyo Jin Kim, Min-Jeong Kim, Timothy Lee Turner, Bong-Soo Kim, Kyung-Mo Song, Sung Hun Yi, and Myung-Ki Lee. Pyrosequencing analysis of microbiota reveals that lactic acid bacteria are dominant in Korean flat fish fermented food, gajami-sikhae. Biosci Biotechnol Biochem 2014. 78(9):1611-1618. (IF=2.337)

30. Min-Jeong Kim, Sunhyun Park, Ran-Sook Lee, Sang-Dong Lim, Hyo Jin Kim and Myung-Ki Lee. Selection and characteristics of fermented salted seafood (Jeotgal)-originated strains with excellent S-adenosyl-L-methionine (SAM) production and probiotics efficacy. Korean J Food Sci An 2014. 34(1):65-72.

31. Hyo Jin Kim, Timothy Lee Turner and Yong-Su Jin. Combinatorial Genetic Perturbation to Refine Metabolic Circuits for Producing Biofuels and Biochemicals. Biotechnol Adv 2013. 31(6):976-985. (BRIC 한빛사 논문) (IF=17.681)

32. Won-Heong Lee, Hong Nan, Hyo Jin Kim, Yong-Su Jin. Simultaneous Saccharification and Fermentation by Engineered Saccharomyces cerevisiae without Supplementing Extracellular β-Glucosidase. J Biotechnol 2013. 167(3):316-322. (IF=3.595)

33. Hyo Jin Kim, Hyeong-Rho Lee, Chang Sup Kim, Yong-Su Jin and Jin-Ho Seo. Investigation of Protein Expression Profiles of Erythritol-producing Candida magnoliae in Response to Glucose Perturbation. Enzyme Microb Technol 2013. 53(3):174-180. (IF=3.705)

34. Hyo Jin Kim, Changbin Chen, Medhi Kabbage, Martin B. Dickman. Identification and Characterization of Sclerotinia sclerotiorum NADPH oxidases. Appl Environ Microbiol 2011. 77(21):7721-7729. (IF=5.005)

35. Brett M. Williams, Medhi Kabbage, Hyo Jin Kim, Robert Britt and Martin B. Dickman. Tipping the Balance: Sclerotinia sclerotiorum Secreted Oxalic Acid Suppresses Host Defenses by Manipulating the Host Redox Environment. 2011. PLoS Pathog 7(6):e1002107 (IF=7.464)

36. Yong-Cheol Park, Do-Yup Lee, Dae-Hee Lee, Hyo-Jin Kim, Yeon-Woo Ryu and Jin-Ho Seo. Proteomics and Physiology of Erythritol Producing Strains. 2005. J Chromatogr B 815(1-2): 251-260. (IF=3.318)

37. Hyo-Jin Kim, Do-Yup Lee, Dae-Hee Lee, Yong-Cheol Park, Dae-Hyuk Kweon, Yeon-Woo Ryu and Jin-Ho Seo. Strategic Proteome Analysis of Candida magnoliae with Unsequenced Genome. 2004. Proteomics 4:3588-3599. (IF=5.393)

38. Lee, Do-Yup, Yong-Cheol Park, Hyo-Jin Kim, Yeon-Woo Ryu and Jin-Ho Seo. Proteomic Analysis of Candida magnoliae Strains by Two Dimensional Electrophoresis and Mass Spectrometry. 2003. Proteomics 3: 2330-2338. (IF=5.393)

39. Eun-Sung Koh, Tae-Hee Lee, Do-yup Lee, Hyo-Jin Kim, Yeon-Woo Ryu & Jin-Ho Seo. Scale-up of Erythritol Production by an Osmophilic Mutant of Candida magnolia. 2003. Biotechnology Letters 25: 2103-2105. (IF=2.716)

☎ Corresponding author

§ equally contributed