- Joint Label Fusion (underlying image segmentation technology)
- Greedy (underlying image registration technology in fast-ASHS)
- ITK-SNAP (useful for QC, viewing and editing ASHS segmentations)
- Convert3D (image processing Swiss Army Knife style tool)
- HS3 (Community effort to develop a common subfield protocol)
- Penn Hippo Atlas (Postmortem MRI and histology of the hippocampus)