This section is organized as a series of questions to help you get started with ASHS.
Most users will run ASHS using one of the existing atlases that we provide. However, for this to work, your MRI scans must be sufficiently similar to the MRI scans used to form the atlas. Currently, the following atlases are available for ASHS:
Use this atlas if:
Input data and segmentation for the ASHS-PMC atlas
Use this atlas if:
Input data and segmentation for the ASHS-PMC-T1 atlas
Use this atlas if:
If none of the atlases above suit your needs, you can build your own atlas. You will need:
Check that your data meet the requirements for the atlas you choose:
If you are using an existing atlas you can run ASHS in two ways:
If you are building a custom atlas, you will need to install ASHS on an HPC cluster