Software

MiRKAT: Available on CRAN.

  • Distance-based association analysis for the microbiome and a wide variety of outcome types, including continuous, binary, longitudinal, high-dimensional, and paired/correlated.


MiRKAT-S: Available on GitHub or in MiRKAT package on CRAN.

  • Distance-based association analysis for the microbiome and censored survival outcomes.


pldist: Available on GitHub.

  • Creates ecological distance and dissimilarity matrices (UniFrac, Bray-Curtis, Gower, Jaccard, and Kulczynski) for longitudinal microbiome data.


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