MiRKAT: Available on CRAN.
Distance-based association analysis for the microbiome and a wide variety of outcome types, including continuous, binary, longitudinal, high-dimensional, and paired/correlated.
Distance-based association analysis for the microbiome and censored survival outcomes.
pldist: Available on GitHub.
Creates ecological distance and dissimilarity matrices (UniFrac, Bray-Curtis, Gower, Jaccard, and Kulczynski) for longitudinal microbiome data.
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