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S Dash, R Jagadeesan, ISC Baptista, V Chauhan, V Kandavalli, SMD Oliveira and AS Ribeiro (2023) A library of reporters of the global regulators of gene expression in Escherichia coli. mSystems, e00065-24. DOI: 10.1128/msystems.00065-24
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ISC Baptista*, V Kandavalli*, V Chauhan, MNM Bahrudeen, BLB Almeida, CSD Palma, S Dash, and AS Ribeiro (2022) Sequence-dependent model of genes with dual σ factor preference, Biochim. Biophys. Acta Gene Regul. Mech. 1865(3), 194812. DOI: 10.1016/j.bbagrm.2022.194812. *Equal contributions.
For a short Video: press HERE.
S Dash*, CSD Palma*, ISC Baptista, BLB Almeida, MNM Bahrudeen, V Chauhan, R Jagadeesan and AS Ribeiro (2022) Alteration of DNA supercoiling serves as a trigger of short-term cold shock repressed genes of E. coli. Nucleic Acids Research 50(15) 8512–8528.
For a presentation PRESS HERE.
V Chauhan*, MNM Bahrudeen*, CSD Palma, ISC Baptista, BLB Almeida, S Dash, V Kandavalli, and AS Ribeiro (2021). Analytical kinetic model of native tandem promoters in E. coli. PLOS Computational Biology 18(1): e1009824. DOI: 10.1371/journal.pcbi.1009824. Also in bioRxiv. DOI:10.1101/2021.11.19.468961. *Equal contributions.
For a audioslides presentation PRESS HERE. This is a presentation at the Congress of Microbiology and Biotechnology (Microbiotec21) of the Portuguese Society of Microbiology and the Portuguese Society of Biotechnology, in Nov. 2021.
MNM Bahrudeen*, V Chauhan*, CSD Palma, SMD Oliveira, VK Kandavalli, and AS Ribeiro (2019) Estimating RNA numbers in single cells by RNA fluorescent tagging and flow cytometry. Journal of Microbiological Methods 166, 105745. DOI: 10.1016/j.mimet.2019.105745 *Equal contributions.
For a audioslides presentation PRESS HERE
S Startceva, VK Kandavalli, A Visa, and AS Ribeiro (2019) Regulation of asymmetries in the kinetics and protein numbers of bacterial gene expression. Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms 1862(2), 119–128. DOI: 10.1016/j.bbagrm.2018.12.005
For a audioslides presentation PRESS HERE
A.S. Ribeiro (2018) Official Inaugural Lecture of Professorship.
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J. Mäkelä, V. Kandavalli and A.S. Ribeiro (2017) Rate-limiting steps in transcription dictate sensitivity to variability in cellular components. Scientific Reports 7:10588. DOI:10.1038/s41598-017-11257-2. PDF
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VK Kandavalli, H Tran, and AS Ribeiro (2016) Effects of sigma factor competition on the in vivo kinetics of transcription initiation in Escherichia coli. BBA Gene Regulatory Mechanisms 1859, 1281-1288.
For audioslides presentation PRESS HERE
AS Ribeiro, BA Eales, J Lloyd-Price, and FG Biddle (2014) Predictability and randomness of paw choices are critical elements in the behavioural plasticity of mouse paw preference. Animal Behavior 98, 167-176.
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