Inquiry question: How do cells coordinate activities within their internal environment and the external environment?
Students:
2.1 investigate the way in which materials can move into and out of cells, including but not limited to:
a) conducting a practical investigation modelling diffusion and osmosis (ACSBL046)
b) examining the roles of active transport, endocytosis and exocytosis (ACSBL046)
c) relating the exchange of materials across membranes to the surface-area-to-volume ratio, concentration gradients and characteristics of the materials being exchanged (ACSBL047)
2.2 investigate cell requirements, including but not limited to:
a) suitable forms of energy, including light energy and chemical energy in complex molecules (ACSBL044)
b) matter, including gases, simple nutrients and ions
c) removal of wastes (ACSBL044)
2.3 investigate the biochemical processes of photosynthesis, cell respiration and the removal of cellular products and wastes in eukaryotic cells (ACSBL049, ACSBL050, ACSBL052, ACSBL053)
2.4 conduct a practical investigation to model the action of enzymes in cells (ACSBL050)
2.5 investigate the effects of the environment on enzyme activity through the collection of primary or secondary data (ACSBL050, ACSBL051)
DEFINITIONS (Tier 3 words, subject-specific terminology):
Solvent – the medium in which solutes are dissolved (eg water)
Solute – the substances that are dissolved in the solvent (eg sugar)When you throw a teaspoon of sugar in a cup of water, the sugar is the solute and the water is the solvent. Together, the sugar water is called a solution.
Concentration gradient – The process whereby solutes move from an area of low solute concentration to high solute concentration (more solute for a fixed amount of solvent)
Diffusion – Molecules will move from area of high solute concentration to low solute concentration (moving along the concentration gradient)
Osmosis – Water will move from an area of low solute concentration to high solute concentration (due to the attraction to solute charges as water is polar. This means it is attracted to both positive and negative ions of the solute)
Active transport – Moving molecules against the concentration gradient. Moving substances from low solute concentration to high solute concentration (against the concentration gradient)
Selectively permeable membranes - also called partially permeable membranes or semi-permeable membranes. They let some substances pass through them, but not others.
BACKGROUND CONCEPTS:
What is diffusion?
Particles in liquids and gases are constantly moving. As a result of this movement, particles will spread out in all directions. Diffusion happens when solute particles are free to move: in gases, and for particles dissolved in solutions. (Diffusion does not occur in solids because the particles are not mobile in the solid state.)
As a net result of random movement, particles move from a region where they are in high concentration to a region where they are in low concentration.
View video:
https://www.youtube.com/watch?v=ygiCHALySmM [1.18 mins]
Watch the video below to see smoke particles viewed under a microscope. The large soot particles are being pushed around by the movement of the air particles, which are too small to see with a microscope.
View video:
https://www.youtube.com/watch?v=qkR0j0OKp7g [2.39 mins]
Lead nitrate and potassium iodide slowly dissolving and diffusing through water until they meet each other. At the place where they meet, a band of solid lead(II) iodide is formed. (The lead nitrate diffuses through the water more slowly than potassium iodide.)
2.1 a) investigate the way in which materials can move into and out of cells, including but not limited to:
conducting a practical investigation modelling diffusion and osmosis (ACSBL046)
View video:
How do things move across the membrane? https://www.youtube.com/watch?v=u0co0yC89IE&list=PLuvczWTLJXAu_Co-DRNi5uBQUCtCdXVsm&index=11 [2.21 mins]
The cell is not isolated from ite environment - some substances need to enter the cell - the raw materials for cell respiration (glucose, oxygen) as well as other substances such as amino acids for protein synthesis (making proteins). Some products of metabolism (carbon dioxide from respiration) need to leave the cell. Water movement in and out is also essential for the cell.
It is inportant for the cell to be able to control this movement, to some degree, and that is one of the roles of the cell membrane.
The movement of substances in and out of the cell membranes can occur in two energy formats:
1. PASSIVE TRANSPORT - NO ENERGY (ATP) required to be used.
A. Diffusion
i) Simple Diffusion
ii) Facilitated Diffusion
B. Osmosis
2. ACTIVE TRANSPORT - ENERGY (ATP) required to be used
A. The Sodium-Potassium Pump
B. Bulk Transport
i) Exocytosis
ii) Endocytosis
View video:
Passive and active transport https://www.youtube.com/watch?v=PMFoc_sJdwM&list=PLuvczWTLJXAu_Co-DRNi5uBQUCtCdXVsm&index [4.22 mins]
The cell is not required to use any energy in any form of passive transport, i.e. simple diffusion, facilitated diffusion or osmosis.
What is diffusion?
Dissolved or gaseous substances have to pass through the cell membrane to get into or out of a cell. Diffusion is one of the processes that allows this to happen.
Particles diffuse down a concentration gradient, from an area of high concentration to an area of low concentration. This is how the smell of cooking travels around the house from the kitchen, for example. This is shown in the left side of Diagrams 1 and 2 below,
Oxygen and carbon dioxide, dissolved in water, are exchanged by diffusion in the lungs:
oxygen moves down a concentration gradient from the air in the alveoli to the blood
carbon dioxide moves down a concentration gradient from the blood to the air in the alveoli
The dissolved substances will only continue to diffuse while there is a concentration gradient (high concentration hypertonic to low concentration hypotonic until the concentrations are the same isotonic.
i) Simple diffusion
A few types of molecules can pass through the cell membrane without requiring assistance. They move from areas of high concentration (hypertonic) to low (hypertonic). This movement, called diffusion or simple diffusion is shown in the left of Diagrams 1 and 2.
ii) Facilitated diffusion: The role of Transport Proteins in diffusion
Most molecules that need to enter or leave cells, or cross organelle membranes, need the help of proteins. Passive transport of materials across the plasma membrane from an area of their higher concentration to area of their lower concentration with the help of transport proteins is called facilitated diffusion.
Transport proteins involved in passive transport - facilitated diffusion are:
channel proteins -
“channel” proteins form open holes in the membrane of a cell and are open to both the outside and inside of the cell. Each channel protein has a size and shape that will accept only specific molecules. Water channel proteins (aquaporins) allow water to diffuse in single file across the membrane at a very fast rate - up to 100 million per second. Ion channel proteins allow ions to very rapidly diffuse across the membrane. Channel protein actions are shown in the right side of Diagram 1, the middle of Diagram 2, in Diagram 3 and in the far left of Diagram 4 below. The movement is with the concentration gradient, and requires NO ENERGY input from the cell.
Extension: Channel proteins are special arrangements of amino acids which embed in the cell membrane, providing hydrophilic (water-loving) passages for water and small, polar ions down their concentration or electric potential gradients, an energetically favourable reaction. These proteins are characterized by being open to both the intracellular and extracellular spaces at the same time. Channels are typically designed so that only specific substances can pass through.
carrier proteins -
carrier proteins are transport proteins specific for an ion, molecule, or group of substances. Carrier proteins "carry" the ion or molecule across the membrane by changing shape after binding with the ion or molecule. They are only open to one side of the membrane at once. When carrier proteins are involved in passive transport - facilitated diffusion, the movement is with the concentration gradient and requires NO ENERGY input from the cell. Carrier proteins are seen below in the far right of Diagram 2 and in Diagram 4.
View videos:
CBL#8 https://www.youtube.com/watch?v=XQAh0YYNJ0Q&list=PLeFSFSJ9WqSCfU18KMOtHG1BjN3Qvt0kg&index=10 [6.26 mins]
What is diffusion https://www.youtube.com/watch?v=DE4C1zXtTwI&list=PLuvczWTLJXAu_Co-DRNi5uBQUCtCdXVsm&index=15 [4.15 mins]
View PPT: Membrane Structure and Function
View video:
CBL#8 Diffusion https://www.youtube.com/watch?v=XQAh0YYNJ0Q&list=PLeFSFSJ9WqSCfU18KMOtHG1BjN3Qvt0kg&index=10 [6.27 mins]
Aim:
To show diffusion in a liquid environment
Equipment:
Beaker
Potassium permanganate crystal
Metal spatula
Water
Method:
Add approximately 200mLs of water to a 250mL beaker
Using the flat part of the metal spatula, carefully transfer 1-2 crystals of potassium permanganate into the beaker
3. Observe across a few minutes.
Discussion:
The water surrounding the crystal has lower solute concentration (no dye molecules). Since the water particles are moving, the drop of dye (containing many dye molecules) spreads out in the water of the beaker until the solute concentration is even throughout (moving with the concentration gradient).
View video https://www.youtube.com/watch?v=hxZFU2LBfgA [7.00 mins] (It does play, depite the image)
Then see if you can work out the sequence for the diffusion rates in the images below the video.
Aim:
To investigate diffusion using iodine, which turns blue-black in the presence of starch.
Hypothesis:
If the solute (iodine) molecules diffuse from the solution in the beaker into the tubing, then the starch inside the tubing will turn blue-black.
Equipment:
dialysis tubing
2 elastic bands
starch solution
iodine in dropper bottle
water
large beaker
Method:
1) Add 250 ml of tap water to a beaker.
2) Add several droppers of Iodine solution to the water until it is visibly yellow-amber in colour. Record colour.
3) Soak the dialysis tubing in water for a few minutes until it begins to open. Fold and clip one end of the bag to secure it so that no solution seeps through.
4) Open the other end of the tubing to form a bag. Add 3ml of starch into it.
5) Close the bag record the colour of the solution.
6) Rinse the outside of the bag in tap water and secure the top with an elastic band.
7) Place the bag in the beaker with the top hanging over the edge of the beaker.
8) Leave the bag for about 30 minutes.
9) Carefully remove and stand in a dry beaker. Record the final colour of the solutions in the bag and the original beaker.
View PPT: Diffusion Lab https://slideplayer.com/slide/7702635/
USBiologyTeaching.Com.
Osmosis is is a form of passive transport that’s similar to diffusion, but it involves movement of solvent (usually water) molecules, from a region of higher concentration of water on one side of the selectively permeable membrane to a region of lower concentration of water on the other side of the membrane. (A high concentration of water molecules is found in a dilute solution, while a a low concentration of water molecules is found in a concentrated solution.) Water is a polar molecule that will not pass through the lipid bilayer; however, it’s small enough to move through the protein channels of most cell membranes. The membrane allows the solvent (water) to move through, but keeps out the solute (the particles dissolved in the water).
Typically, a cell contains about a 1% saline solution —1% salt (solute) and 99% water (solvent). Transport by osmosis is affected by the concentration of solute (the number of particles) in the water.
A hypotonic solution has less solute and higher water concentration than inside the cell. An example is 100% distilled water, which has less solute than what is inside the cell. Therefore, if a human cell is placed in a hypotonic solution, molecules diffuse down the concentration gradient into the cell until the cell’s membrane bursts. See left box of the first diagram below.
An isotonic solution has the same concentration of solute and solvent as found inside a cell, so a cell placed in an isotonic solution — typically 1% saline solution for humans — experiences equal flow of water into and out of the cell, maintaining equilibrium, and no overall change is seen. See middle box of the first diagram below.
A hypertonic solution has more solute and lower water concentration than inside the cell. So if the membrane of a human cell was placed in a 10% saline solution (10% salt and 90% water) water would flow out of the cell (from the higher concentration inside to the lower concentration outside), therefore shrinking it. See right box of the first diagram below.
View videos:
View and interact with PPT https://slideplayer.com/slide/15427098/
View video: Osmosis and water potential https://www.youtube.com/watch?v=L-osEc07vMs [9.49 mins]
Complete worksheet https://www.amoebasisters.com/uploads/2/1/9/0/21902384/video_recap_of_osmosis_by_amoeba_sisters_2.5.pdf (below right)
Aim:
To investigate osmosis in living tissue
Equipment:
Scalpel
Ruler
Potato
Salt
4 Beakers
Water
Paper towel
Method:
Cut potatoes into 6 groups each of 3 small, uniform cubes (=18 cubes) measuring 1/2 cm by 1/2 cm.
Blot cubes with paper towel to remove excess moisture.
Add 100mL of water to one beaker, label it 0.
Weigh 1g of salt on paper towel on a balance. Measure 100mL water in a measuring cylinder. Add the water and salt to a beaker and stir gently. Label this beaker 1.
Repeat to make 4 more solutions of salt: 2g in 100mL, 3g in 100mL, 4g in 100mL, 5g in 100mL and add to 5 separate beakers. Label the 4 beakers 2 to 5 according to the mass of salt contained.
Weigh each group of three potatoes cubes on a balance and record the weight before immersing the 3 in a separate solution.
Leave for as long as possible within a 30min - 24 hour time span.
After immersion, blot dry and weigh each group again.
Calculate the changes in the potato masses (as in discussion below).
Discussion:
1. Calculate the percentage change in mass using [final mass - start mass] / start mass x 100
Example :
A piece of potato has a mass of 2.5 g at the start and 3.0 g at the end.
percentage change in mass = [(3.0 – 2.5) / 2.5] × 100 = [0.5 / 2.5] × 100 = +20%
The plus sign shows that it has gained mass.
2. Comment on why a group gained mass, lost mass or retained the same mass.
3. Draw a graph of your results and identify the sucrose concentration in the potato (see example in diagram below).
Alternative to Practical
View Video: Osmosis in Potatoes: https://www.youtube.com/watch?v=jTDATlaBV-o [5.19]
View video:
Hypertonic, Hypotonic and Isotonic Solutions! https://www.youtube.com/watch?v=rMa9MzP19zI [4.45]
PASSIVE TRANSPORT REVIEW: Diffusion vs osmosis
Passive transport = no external energy required.
Diffusion is solute (solid) molecules moving through a cell membrane from an area of their higher concentration to an area of their lower concentration in two ways:
passive diffusion: a solute molecule dissolves in the phospholipid bilayer, diffuses across it, and then dissolves in the aqueous solution at the other side of the membrane.
facilitated diffusion: proteins help the solute molecules to cross the plasma membrane without directly interacting with its hydrophobic (water resisting) interior:
channel proteins form open pores through the membrane, allowing the free diffusion of any molecule of the appropriate size and electric charge.
carrier proteins bind specific molecules on one side of the membrane, then change their form to allow the molecule to pass through the membrane and be released on the other side.
Osmosis is water moving across the semipermeable membrane. Most of the water passes through aquaporins (channel proteins). Aquaporins allow only water molecules in and out of the cell, stopping ions and other solutes.
2.1 b) investigate the way in which materials can move into and out of cells, including but not limited to:
examining the roles of active transport, endocytosis and exocytosis
While passive transport is a great strategy for moving molecules into or out of a cell - it's cheap, easy, and all the cell has to do is sit there and let the molecules diffuse in - it doesn't work in every situation. Suppose glucose is more concentrated inside a cell than outside. If the cell needs more glucose to meet its metabolic needs, how can it get that in?
The cell can't import glucose for free using diffusion, because the higher concentration inside the cell means the glucose will diffuse out rather than flowing in. Instead, the cell must bring in more glucose molecules via active transport. In active transport the cell expends energy (in the form of ATP) to move a substance against its concentration gradient.
Active transport occurs across a semipermeable membrane against the normal concentration gradient, moving from the area of lower concentration to the area of higher concentration and requiring an expenditure of the energy released from an ATP molecule.
Embedded with the hydrophilic heads in the outer layer of the membrane are transmembrane protein molecules able to detect and move compounds through the membrane. These carrier or transport proteins interact with the passenger molecules and use the ATP-supplied energy to move them against the gradient. The carrier molecules combine with the transport molecules — most importantly amino acids and ions — to pump them against their concentration gradients.
Active transport lets cells obtain nutrients that can’t pass through the membrane by other means.
The main types of ActiveTransport are
A. Pumps eg the Sodium-Potassium Pump
B. Bulk Transport involving Exocytosis and Endocytosis.
Active Transport often involves carrier proteins that act as pumps that USE ENERY (supplied by ATP) to move ions and molecules across the membrane. They are often called cell membrane pumps. Active Transport is especially important in keeping a constant ion concentration within the cell and between cells.
The carrier protein first binds with a particle of the substance to be transported. (The carrier protein must be a similar shape that fits the molecule or ion to which it is binding .)
When the molecule binds with the carrier protein, chemical energy allows the cell to change the shape of the carrier protein so that the particle to be moved is released on the other side of the membrane (like an open door). Once the particle is released, the carrier protein returns to its original shape.
Sodium-Potassium Pump
The main function of the N+/K+ ATPase pump is to keep cells in a state of a low concentration of sodium ions and higher levels of potassium ions.
The sodium-potassium pump transports sodium out of and potassium into the cell in a repeating cycle of shape changes. In each cycle, three sodium ions leave the cell, while two potassium ions enter. This process takes place in the following steps:
To begin, the pump is open to the inside of the cell. In this form, the pump binds sodium ions, and will take up three of them.
When the sodium ions bind, they trigger the pump to break down ATP.
The ATP breakdown makes the pump change shape and it now opens towards the space outside the cell. In this conformation, the pump releases the three sodium ions outside the cell.
In its outward-facing form, the pump switches binds with potassium ions. It will bind two of them, and this triggers athe pump to change back to its original form, opening towards the interior of the cell.
In its inward-facing shape, the two potassium ions will be released into the cytoplasm. The pump is now back to where it was in step 1, and the cycle can begin again.
The pump involves the carrier protein going back and forth between two forms: an inward-facing form that binds sodium and an outward-facing form that binds potassium.
View videos:
CBL#10 Active Transport https://www.youtube.com/watch?v=_lq9OVeAGLo&list=PLeFSFSJ9WqSCfU18KMOtHG1BjN3Qvt0kg&index=12 [7.19 mins]
Amoeba Sisters Sodium Potassium Pump https://www.youtube.com/watch?v=7NY6XdPBhxo&feature=youtu.be&t=0s [7.00 mins]
Example of active transport in plants
In plants, active transport enables roots to absorb nutrients from the soil. Plant nutrients are more concentrated inside the roots than in the surrounding soil. Active transport in the root cell membrane enables the plant to absorb the nutrients against the concentration gradient. Without active transport, nutrients would diffuse out of the roots.
Visit https://www.teachengineering.org/activities/view/van_membrane_activity3?fbclid=IwAR10E66alZygOFcC0J7rLma4h0_D3fY34Sk6a6adlo7ahsi3TlMAu4K2tNU for instructions and resources
Bulk transport is a form of active transport where processes take in or release molecules from the cell that are too large to pass directly through the plasma membrane. Two process are involved in taking in or releasing large molecules from the cell - ENDOCYTOSIS and EXOCYTOSIS.
Endocytosis
Large molecules are engulfed and enclosed by a portion of the cell plasma membrane (packaged in membrane-bound sacs called a vesicle) and moved across the membrane.
During ENDOCYTOSIS the cell membrane folds into a pouch that encloses the particles.
This pocket grows until it is pinched off, forming a vesicle (membrane-wrapped bubble) trapping the pouch and its contents inside the cell.
The vesicle can then fuse with other organelles (eg lysosomes) or release its contents into the cytoplasm.
View video:
Bulk transport https://www.youtube.com/watch?v=u0rqRkvSMpA&list=PLuvczWTLJXAu_Co-DRNi5uBQUCtCdXVsm&index=13 [3.44 mins]
Exocytosis
EXOCYTOSIS is the opposite of endocytosis.
In exocytosis, the cell creates a vesicle to enclose something that is inside itself, for the purpose of moving it outside. This most commonly occurs to “export” an important product, such as in cells which make enzymes, hormones, and antibodies that are needed throughout the body.
In eukaryotic cells, protein products are made in the endoplasmic reticulum. They are often packaged by the endoplasmic reticulum into vesicles, and sent to the Golgi apparatus.
The Golgi apparatus can be thought of like a “post office.” It receives packages from the endoplasmic reticulum, processes them, and “addresses” them by adding molecules that will be recognised by receptors on the membrane of the cell that will receive the product.
The Golgi apparatus then packages the finished “addressed” products into vesicles of its own, which move towards the cell membrane where they dock and join with it.
In the joining process, the vesicle membrane becomes part of the cell membrane, and the vesicle’s contents are spilled into extracellular space.
Mucus and waste products are other materials excreted by exocytosis.
Endocytosis and Exocytosis
Both move masses of material - they are bulk transport forms of active transport
Both require energy - they are active transport modes
View video:
CBL#10a Endocytosis and exocytosis https://www.youtube.com/watch?v=-9SJ4HIagNo&list=PLeFSFSJ9WqSCfU18KMOtHG1BjN3Qvt0kg&index=13 [8.09 mins]
VIEW Videos:
Active vs Passive Transport https://www.youtube.com/watch?v=Gecu_RKFPho [6.01 mins]
Crash Course - Membranes and Transport https://www.youtube.com/watch?v=dPKvHrD1eS4&list=PL3EED4C1D684D3ADF&index=5 [11.44]
View video Amoeba Sisters: Cell Transport https://www.youtube.com/watch?v=Ptmlvtei8hw [7.59]
Complete worksheet https://www.amoebasisters.com/uploads/2/1/9/0/21902384/video_recap_of_cell_transport_by_amoeba_sisters.pdf (below right)
Plan and carry out a practical investigation to determine the relationship between concentration gradients and the rate of diffusion.
KEY POINTS:
Water is NOT actively transported. The movement of water can only be done via passive transport - osmosis.
The movement of water will change the solute concentration and thereby the concentration gradient. This change in concentration gradient will affect the direction and extent of diffusion.
Active transport uses energy to move substances against the concentration gradient.
2.1 c) investigate the way in which materials can move into and out of cells, including but not limited to:
relating the exchange of materials across membranes to the surface-area-to-volume ratio, concentration gradients and characteristics of the materials being exchanged
Note: concentraion gradients and nature of materials have been covered in treatment of active and passive transport.
In order to survive, cells must constantly interact with their surrounding environment.
Gases and food molecules dissolved in water must be absorbed, and waste products must be eliminated. Each internal part of the cell has to be served by a part of the cell surface - the cell membrane. As a cell grows bigger, its internal volume gets bigger and the cell membrane expands. The volume increases more rapidly than the surface area, as we will see in an experiment, so the amount of surface area available to pass materials to a unit volume of the cell decreases.
At some point, there is just enough surface available to service all the interior; to survive, the cell must stop growing.
The important point is that the surface area to the volume ratio gets smaller as the cell gets larger.
Thus, if the cell grows beyond a certain limit, not enough material will be able to cross the membrane fast enough to accommodate the increased cell volume. When this happens, the cell must divide into smaller cells with favourable surface area/volume ratios, or cease to function.
That is why cells have limiting size.
As the cell grows, the volume increases, but the surface area does not increase by the same amount, so the area of the cell membrane available to the contents of the cell is less.
Look at the boxes 1 and 2 in the diagram on the left. The side of the cell becomes twice as big (2 to 4), the surface area increases 4x (24 to 96) but thevolume is 8x (8 to 64), so the surface area available for the volume drops from 3 to 1.5.
The amount of nutrients required is 8 times as much (the cell could 'starve' with nutrients not reaching it in time) and the amount of waste produced also increases 8 times (so the wastes could poison the cell because they wouldn't be removed quickly enough).
For the boxes above, perform the calculations to gain the values for surface area, volume and SA/Vol ratio.
View videos:
Why are cells so small? https://www.youtube.com/watch?v=pp_uHrNu4X8&list=PLuvczWTLJXAu_Co-DRNi5uBQUCtCdXVsm&index=25 [3.23 mins]
CBL#11 Surface Area to Volume Ratio https://www.youtube.com/watch?v=quuR_T9kDjQ&list=PLeFSFSJ9WqSCfU18KMOtHG1BjN3Qvt0kg&index=14 [11.44 mins]
Alternatives to Practical
View videos:
1. Extensive experiment with calculations https://www.youtube.com/watch?v=h8auubIyA6w [23.34 mins]
2. Simpler experiment https://www.youtube.com/watch?v=xuG4ZZ1GbzI [2.44 mins]
2.2 investigate cell requirements, including but not limited to:
a) suitable forms of energy, including light energy and chemical energy in complex molecules
Some organisms such as plants make the energy they need by converting energy from sunlight and storing it in the chemical bonds of glucose. This process is called photosynthesis. The flow of energy through living organisms begins with photosynthesis.
Cells in living organisms like plants and animals release the stored energy by breaking the chemical bonds in glucose to produce ATP. The process in which glucose is broken down and ATP is made is called cellular respiration.
Photosynthesis and cellular respiration are the reverse of each other: the products of one process are the reactants of the other. Together, the two processes store and release energy in living organisms. The two processes also work together to cycle energy, as well as oxygen and carbon dioxide in Earth’s atmosphere.
ATP (adenosine triphosphate) molecules store smaller quantities of energy, but each releases just the right amount to actually do work within a cell. Muscle cell proteins, for example, work by using the energy released when bonds in ATP break . The process of photosynthesis also makes and uses ATP - for energy to build glucose. ATP, then, is the usable form of energy for cells.
A molecule of glucose, C6H12O6, carries a packet of chemical energy just the right size for transport and uptake by cells. Glucose is the "deliverable" form of energy, carried in the blood through capillaries to each of a person's 100 trillion cells. Glucose is also the carbohydrate produced by photosynthesis, and as such is the near-universal food for life – much easier to carry around, but too large for some things. Just like we find several sizes of money useful, organisms need several sizes of energy – a smaller quantity for work within cells, a larger quantity for storage, transport and delivery to cells.
An ATP molecule is like a rechargeable battery: its energy can be used by the cell when it breaks apart into ADP (adenosine diphosphate) and P (phosphate), and then the "worn-out battery" ADP can be recharged using new energy to attach a new phosphate and rebuild ATP. The materials are recyclable, but energy is not.
A single cell uses about 10 million ATP molecules per second, and recycles all of its ATP molecules about every 20-30 seconds.
When one of the three P (phosphate) groups is broken off from the adenosinetriphosphate (ATP tri=3) forming adenosinediphosphate (ADP di=2), energy is released.
View video What is ATP? https://www.youtube.com/watch?v=23ZzI6WZS28 [5.51 mins]
Complete WS
Living organisms obtain chemical energy in one of two ways.
Autotrophs, shown in the diagram below, store chemical energy in carbohydrate food molecules they build themselves. Food is chemical energy stored in organic molecules. Food provides both the energy to do work and the carbon to build bodies. Because most autotrophs transform sunlight to make food, the process they use is called photosynthesis. Only three groups of organisms - plants, algae, and some bacteria - are capable of this life-giving energy transformation. Autotrophs make food for their own use, but they make enough to support other life as well. Almost all other organisms depend absolutely on these three groups for the food they produce. The producers, as autotrophs are also known, begin food chains which feed all life.
Heterotrophs cannot make their own food, so they must eat or absorb it. For this reason, heterotrophs are also known as consumers. Consumers include all animals and fungi, and many protists and bacteria. They may consume autotrophs or other heterotrophs or organic molecules from other organisms. Heterotrophs are limited by total dependence on those autotrophs that originally made the food. If plants, algae, and autotrophic bacteria vanished from earth, animals, fungi, and other heterotrophs would soon disappear as well. All life requires a constant input of energy. Only autotrophs can transform that ultimate, solar source into the chemical energy in food that powers life.
Photosynthesis provides over 99% of the energy for life on earth by transforming light energy to chemical energy stored in food.
Photosynthetic autotrophs, which make food using the energy in sunlight, include (a) plants, (b) algae, and (c) certain bacteria.
View video:
Autotrophs and Heterotrophs https://www.youtube.com/watch?v=9y43NRxMdns [3.43 mins]
View videos:
CBL#12 Energy in Cells https://www.youtube.com/watch?v=atEYUZJ3i4w&list=PLeFSFSJ9WqSCfU18KMOtHG1BjN3Qvt0kg&index=15 [8.23 mins]
CBL#13 Cell Requirements https://www.youtube.com/watch?v=5u1c2Uu0M70&list=PLeFSFSJ9WqSCfU18KMOtHG1BjN3Qvt0kg&index=16 [11.10 mins]
2.2 investigate cell requirements, including but not limited to:
b) matter, including gases, simple nutrients and ions
While different types of cells might need different specific nutrients, all living things require the same basic elements. The four most abundant elements in living things are:
carbon
hydrogen
oxygen
nitrogen
Other elements, including phosphorus, calcium, and iron, are also important, but are needed in much smaller quantities.
Every living cell is made of some combination of the same 20 elements. Cells get these elements by taking them in from their environment. They can come from a variety of different food sources, some of which are small molecules, like salts and water. Other elements come from larger macromolecules, like starches, proteins, and fats.
Gases
Cells require oxygen to carry out cell respiration. Some plant cells require carbon dioxide to carry out photosynthesis. These will be covered in Section 2.3.
Matter
The macromolecules (big molecules) are the basic, energy-providing molecules. They mostly provide the elements used by the cell. The four major macromolecules are:
carbohydrates
lipids
proteins
nucleic acids
Carbohydrates and lipids are both made of carbon, hydrogen, and water, which are all found in the major macromolecules of a cell.
In addition to carbon, hydrogen, and oxygen, proteins can provide a few other elements. All amino acids contain nitrogen, which is an important element in the structure of proteins and nucleic acids. Some proteins also contain sulfur. In addition to being a part of protein structure, sulfur can act as a cofactor for some enzymes.
Nucleic acids provide carbon, hydrogen, and oxygen, but also contain phosphorus. Phosphorus is found in DNA, as well as the molecules used by the cell to store energy.
2.2 investigate cell requirements, including but not limited to:
c) removal of wastes
This will be covered in Section 2.3c.
2.3 investigate the biochemical processes of
a) photosynthesis in eukaryotic cells
Photosynthesis is often considered to be the single most important life process on Earth. It changes light energy into chemical energy and also releases oxygen. Without photosynthesis, there would be no oxygen in the atmosphere. Photosynthesis involves many chemical reactions, but they can be summed up in a single chemical equation:
6CO2 + 6H2O + Light Energy → C6H12O6 + 6O2
Photosynthetic autotrophs capture light energy from the sun and absorb carbon dioxide and water from their environment. Using the light energy, they combine the reactants to produce glucose and oxygen, which is a waste product. They store the glucose, usually as starch, and they release the oxygen into the atmosphere.
The process of photosynthesis, which usually begins the flow of energy through life, uses many different kinds of energy-carrying molecules to transform sunlight energy into chemical energy and build food. Some carrier molecules hold energy briefly, quickly shifting it like a hot potato to other molecules. This strategy allows energy to be released in small, controlled amounts. An example starts in chlorophyll, the green pigment present in most plants, which helps convert solar energy to chemical energy. When a chlorophyll molecule absorbs light energy, electrons are excited and "jump" to a higher energy level. The excited electrons then bounce to a series of carrier molecules, losing a little energy at each step. Most of the "lost" energy powers some small cellular task, such as moving ions across a membrane or building up another molecule. Another short-term energy carrier important to photosynthesis, NADPH, holds chemical energy a bit longer but soon "spends" it to help to build sugar.
Two of the most important energy-carrying molecules are glucose and adenosine triphosphate, commonly referred to as ATP. These are nearly universal fuels throughout the living world and are both key players in photosynthesis, as shown below.
Glucose
A molecule of glucose, which has the chemical formula C6H12O6, carries a packet of chemical energy just the right size for transport and uptake by cells. In your body, glucose is the "deliverable" form of energy, carried in your blood through capillaries to each of your 100 trillion cells. Glucose is also the carbohydrate produced by photosynthesis, and as such is the near-universal food for life.
View videos:
CBL #15 https://www.youtube.com/watch?v=QWeZ4NmL_K0&list=PLeFSFSJ9WqSCfU18KMOtHG1BjN3Qvt0kg&index=18 [15.08 mins]
CBL #15a https://www.youtube.com/watch?v=UAevcZT1ZpQ&list=PLeFSFSJ9WqSCfU18KMOtHG1BjN3Qvt0kg&index=19 [8.29 mins]
What is photosynthesis https://www.youtube.com/watch?v=vdZi6bhHcqY&list=PLuvczWTLJXAu_Co-DRNi5uBQUCtCdXVsm&index=19 [1.33 mins]
The most important biochemical process on the planet https://www.youtube.com/watch?v=9pSYQjvm40s&list=PLuvczWTLJXAu_Co-DRNi5uBQUCtCdXVsm&index=20 [1.32 mins]
Converting light energy to chemical energy https://www.youtube.com/watch?v=CbLMSjDpClM&list=PLuvczWTLJXAu_Co-DRNi5uBQUCtCdXVsm&index=21 [1.47 mins]
View PPT:
Photosynthesis: https://slideplayer.com/slide/9748825/
The first diagram shows how we summarise the chemical reactions that make up photosynthesis.
The second set of two give an idea of the complexity of the biochemical pathways for photosynthesis (not needed to learn in detail).
View video: Photosynthesis https://www.youtube.com/watch?v=uixA8ZXx0KU&list=PLwL0Myd7Dk1F0iQPGrjehze3eDpco1eVz&index=26 [7.45 mins]
Complete WS for Photosynthesis
2.3 investigate the biochemical processes of
b) cell respiration in eukaryotic cells
Cellular (or cell) respiration is the biochemical pathway by which cells release energy from the chemical bonds of food molecules, and provide that energy for the essential processes of life. Cell respiration is as a production process for the energy molecule ATP.
Food consists of organic (carbon-containing) molecules which store energy in the chemical bonds between their atoms. Organisms use the atoms of food molecules to build larger organic molecules including proteins, DNA, and fats (lipids) and use the energy in food to power life processes. By breaking the bonds in food molecules, cells release energy to build new compounds. Although some energy dissipates as heat at each energy transfer, much of it is stored in the newly-made molecules. Chemical bonds in organic molecules are a reservoir of the energy used to make them. Fuelled by the energy from food molecules, cells can combine and recombine the elements of life to form thousands of different molecules. Both the energy (despite some loss) and the materials (despite being reorganised) pass from producer to consumer.
All living cells must carry out cellular respiration: aerobic respiration in the presence of oxygen and/or anaerobic respiration. Prokaryotic cells carry out anaerobic cellular respiration within the cytoplasm or on the inner surfaces of the cells; it is anaerobic respiration because they lack mitochondria. Eukaryotic cells contain mitochondria, the site of most of the reactions involved in aerobic respiration.
While respiration “burns” glucose for energy, it doesn’t produce light or intense heat as the reactions we think of as burning do. This is because cell respiration releases the energy in glucose slowly, in many small steps. It uses the energy that is released to form molecules of ATP.
Cellular respiration in eukaryotes involves many complex chemical reactions, which are summed up with this chemical equation:
C6H12O6 + 6O2 → 6CO2 + 6H2O + Chemical Energy (in ATP)
Summary of the complex set of processes in cellular respiration
https://live.staticflickr.com/8706/16434153643_43df6fc991.jpgSome of the complexity of cell (aerobic) respiration
View video:
View video: Cellular Respiration and the Mighty Mitochondria https://www.youtube.com/watch?v=4Eo7JtRA7lg&feature=youtu.be&list=PLwL0Myd7Dk1F0iQPGrjehze3eDpco1eVz [7.48 mins]
Complete WS for Respiration
Reverse reactions: photosynthesis and aerobic respiration
2.3 investigate the biochemical processes of
c) the removal of cellular products and wastes in eukaryotic cells
Cellular respiration produces H2O and CO2 as metabolic wastes.
CO2 normally binds with water H2O to form carbonic acid H2CO3, helping to maintain the blood's acid/base balance - pH. Since too much CO2 would lower the blood's pH too much, making it too acid, excess CO2 must be constantly removed.
CO2 is excreted from the cell via diffusion into the blood stream, where it is transported in three ways:
Up to 7% is dissolved in its molecular form (CO2) in blood plasma
About 70-80% is converted into hydrocarbonate ions
The remainder binds with haemoglobin in red blood cells, is carried to the lungs, and exhaled.
H2O diffuses out of the cell. In humans, it diffuses into the blood stream, from where it is excreted in the form of perspiration, water vapour in breath, or urine from the kidneys.
View videos:
CBL#13 https://www.youtube.com/watch?v=fgASIMhfmfM&list=PLeFSFSJ9WqSCfU18KMOtHG1BjN3Qvt0kg&index=17 [6.34 mins]
Why our cells need oxygen and need to remove carbon dioxide https://www.youtube.com/watch?v=2cR5QGmNGpU [9.37]
View video:
Cell Requirements and Processes https://www.youtube.com/watch?v=0fOJbAhazmk [10.26 mins]
2.4 conduct a practical investigation to model the action of enzymes in cells
Enzymes are proteins and occur naturally in living biological systems, acting in many metabolic pathways. They are biological catalysts. They work in both anabolic (building molecules) and catabolic (breaking down molecules) reactions in cells.
[A catalyst is a substance which speeds up a reaction, taking less time for it to occur, but isn't itself changed in the reaction. Catalysts lower the amount of energy the cell needs to provide for the reaction to take place - called the activation energy. See Diagram 1.]
Enzymes are highly specific, acting on a single substrate (simply means the substance on which an enzyme acts) or small group of related substrates. Enzymes have an active site - a small portion of the molecule which matches the shape of part of the substrate. Here, the enzyme changes shape slightly, fitting tightly with the substrate and forming the enzyme/substrate complex. See Diagram 2.
The substrate binds to the active site of the enzyme forming the enzyme-substrate complex. Strain is induced in the bonds causes them to break and the products leave the active site, making it available for further reactions. By binding to a substrate and holding it, the reaction happens more efficiently. See Diagram 3.
View videos:
CBL #16 https://www.youtube.com/watch?v=CtkJsninqGo&list=PLeFSFSJ9WqSCfU18KMOtHG1BjN3Qvt0kg&index=21 [10.06 mins]
Enzymes: How polypeptide chains work https://www.youtube.com/watch?v=RwGvSsLCvy8&list=PLuvczWTLJXAu_Co-DRNi5uBQUCtCdXVsm&index=22 [3.58 mins]
Enzymes: Rubisco - the most abundant protein on earth https://www.youtube.com/watch?v=73GL_6T9bxY&list=PLuvczWTLJXAu_Co-DRNi5uBQUCtCdXVsm&index=23 [2.32 mins]
Enzymes: How they work https://www.youtube.com/watch?v=yIBiUM1DuWU&list=PLuvczWTLJXAu_Co-DRNi5uBQUCtCdXVsm&index=26 [3.51 mins]
There are two main models of enzyme activity:
1. Lock and Key Model
The specific action of an enzyme with a single substrate can be explained using a Lock and Key analogy first postulated in 1894 by Emil Fischer. In this analogy, the lock is the enzyme and the key is the substrate. Only the correctly sized key (substrate) fits into the key hole (active site) of the lock (enzyme). Smaller keys, larger keys, or incorrectly positioned teeth on keys (incorrectly shaped or sized substrate molecules) do not fit into the lock (enzyme). Only the correctly shaped key opens a particular lock.
2. Induced Fit Model
Not all experimental evidence can be adequately explained by using the enzyme model assumed by the lock and key theory. A modification, called the induced-fit theory, has been proposed. The induced-fit theory assumes that the substrate plays a role in determining the final shape of the enzyme and that the enzyme is partially flexible. This explains why certain compounds can bind to the enzyme but do not react because the enzyme has been distorted too much. Other molecules may be too small to induce the proper alignment and therefore cannot react. Only the proper substrate is capable of inducing the proper alignment of the active site.
Two models of enzyme action: 1. Lock and Key 2. Induced Fit
Gifs: https://www.amoebasisters.com/gifs.htmlView Videos:
Enzymes a fun introduction https://www.youtube.com/watch?v=XTUm-75-PL4 [4.46]
How enzymes work animation https://www.youtube.com/watch?v=aRSfPLp_I10 [1.15]
Extension: Enzymes: Nature's Factory Workers https://www.youtube.com/watch?v=H_1ULIKzwfA [7.16]
http://www.rsc.org/learn-chemistry/resource/res00000425/testing-for-enzymes?cmpid=CMP00005921
Enzymes act as catalysts and increase the rate of reactions. They are large protein molecules whose catalytic action can be very specific to certain chemical reactions.
Catalase is a common enzyme found in nearly all living organisms exposed to oxygen (such as bacteria, plants, and animals). It catalyses the decomposition of hydrogen peroxide to water and oxygen. Catalase is a very important enzyme in protecting the cell from oxidative damage.
2H2O2 --> 2H2O + O2
To show the similarity between enzymes and chemical catalysts, the teacher may demonstrate (or ask the class to perform as part of the class experiment after reviewing Risk Assess) the catalytic decomposition of hydrogen peroxide solution by manganese(IV) oxide (HARMFUL - see Risk Assess.)
Hydrogen peroxide is used to detect the presence of the enzyme catalase in potato, by detecting the presence of the oxygen gas formed.
Apparatus
Eye protection
Each working group will require:
Conical flask (100 mL)
Measuring cylinder (25 mL)
Bunsen burner
Wooden splint
A bucket or bin for disposal of waste materials
Chemicals
Hydrogen peroxide solution, '5 volume'
Potato (small piece)
Manganese IV oxide
Procedure
Wear safety glasses
a Measure 25 mL of hydrogen peroxide solution into a conical flask.
b Hold a glowing splint in the neck of the flask.
c Note the glowing splint is re-lit by the evolved oxygen.
d Dispose of mixture into the bucket or bin provided.
e Repeat CAREFULLY with a small grain of manganese IV oxide
Alternative to Practical: Decomposition of Hydrogen Peroxide
View video: https://www.youtube.com/watch?v=Ta4DomSDzF8 [4.13 mins]
2.5 investigate the effects of the environment on enzyme activity through the collection of primary or secondary data
The activity of enzymes is affected by pH, temperature, enzyme concentration and substrate concentration. Enzymes work best within specific temperature and pH ranges, at which they experience maximal activity. Sub-optimal conditions can cause an enzyme to lose its ability to bind to a substrate.
Temperature: Raising temperature generally speeds up a reaction, and lowering temperature slows down a reaction. However, high temperatures can cause an enzyme to lose its shape (denature) and stop working.
pH: Each enzyme has an optimum pH range. Changing the pH outside of this range will slow enzyme activity. Extreme pH values can cause enzymes to denature.
Enzyme concentration: Increasing enzyme concentration will speed up the reaction, as long as there is substrate available to bind to. Once all of the substrate is bound, the reaction will no longer speed up, since there will be nothing for additional enzymes to bind to.
Substrate concentration: Increasing substrate concentration also increases the rate of reaction to a certain point. Once all of the enzymes have bound, any substrate increase will have no effect on the rate of reaction, as the available enzymes will be saturated and working at their maximum rate.
Enzymes are "specific." Each type of enzyme typically only reacts with one, or a couple, of substrates. Some enzymes are more specific than others and will only accept one particular substrate. Other enzymes can act on a range of molecules, as long as they contain the type of bond or chemical group that the enzyme targets.
Enzymes are reusable. Enzymes are not reactants and are not used up during the reaction. Once an enzyme binds to a substrate and catalyzes the reaction, the enzyme is released, unchanged, and can be used for another reaction. This means that for each reaction, there does not need to be a 1:1 ratio between enzyme and substrate molecules.
View videos:
CBL #17 https://www.youtube.com/watch?v=_D13OFzjDQU&list=PLeFSFSJ9WqSCfU18KMOtHG1BjN3Qvt0kg&index=22 [10.56 mins]
Enzymes: Environmental factors affecting https://www.youtube.com/watch?v=Dv-v2Ksp80k&list=PLuvczWTLJXAu_Co-DRNi5uBQUCtCdXVsm&index=27 [4.33 mins]
Effect of temperature on enzyme activity
1. Carry out the experiment for effect of changing pH levels given below:
(Ref https://www.sasta.asn.au/files/266_pm14_sample_pages_from_practical_manual_version_15.pdf)
2. View the video and/or reproduce the experiment for surface area vs enzyme activity
3. Use the same setup to design your own experiments for temperature and enzyme concentration.
Alternative to Practical: Effect of surface area on enzyme activity
View video: https://www.youtube.com/watch?v=RY0aHmyo98E&t=115s [1.55 mins]
Plan a similar experiment to investigate temperature, pH and enzyme concentration.
1. Visit and interact with http://www.mhhe.com/biosci/genbio/virtual_labs_2K8/labs/BL_02/index.html (requires Flash to be enabled https://support.digication.com/hc/en-us/articles/115003963468-Enabling-Flash-for-Google-Chrome-Windows-Macintosh- )
Open the Virtual Lab: Enzyme Controlled Reactions
The virtual lab simulation will be on the right side of the screen, and the “Question” column will be on the left side of the screen.
Click the monitor in the lab simulation to watch a video about enzyme action.
Click the “Information” bar at the bottom of the lab simulation and read all the background information.
Read all background information and instructions in the “Question” column.
Answer questions 1-9 on the Enzyme Controlled Reactions Worksheet (below).
Follow the instructions in the “Question” column to complete the virtual lab. You must test each lactose sample at all pH levels: 3,5,7,9, and 11. Record your data in Table 1 on the Lab Worksheet.
Answer questions 10 – 15 on the Lab Worksheet (below).
Image of the virtual lab below. This is not an active link.