Publications

Publications 2015 - 2021

Hernández R., Jimenez H., Vargas-Garcia C., Caro-Quintero A., Reyes A. (2021).Disentangling the Complexity of the Rumen Microbial Diversity Through Fractionation Using a Sucrose Density Gradient. Frontiers in Microbiology, 12, 1883. DOI:10.3389/fmicb.2021.664754

Simbaqueba, J., Rodriguez, E. A., Burbano, D. M., Gonzalez, C., & Caro-Quintero, A (2021).Putative Novel Effector Genes Revealed by the Genomic Analysis of the Phytopathogenic Fungus Fusarium oxysporum f. sp. physali (Foph) That Infects Cape Gooseberry Plants. Frontiers in Microbiology. 2020 ;11:593915. DOI: 10.3389/fmicb.2020.593915.

Santos-Torres, M., Romero-Perdomo, F., Mendoza-Labrador, J., Gutiérrez, A. Y., Vargas, C., Castro-Rincon, E., Caro-Quintero, A... & Estrada-Bonilla, G. A. (2021). Genomic and phenotypic analysis of rock phosphate-solubilizing rhizobacteria. Rhizosphere, 17, 100290.

Rodriguez-Castaño, G. P., Rey, F. E., Caro-Quintero, A., & Acosta-González, A. (2020). Gut-derived Flavonifractor species variants are differentially enriched during in vitro incubation with quercetin. PloS one, 15(12), e0227724.

Pacheco-Montealegre, M. E., Dávila-Mora, L. L., Botero-Rute, L. M., Reyes, A., & Caro-Quintero, A. (2020). Fine resolution analysis of microbial communities provides insights into the variability of cocoa bean fermentation. Frontiers in microbiology, 11, 650.

Ruiz-Moreno, H. A., López-Tamayo, A. M., Caro-Quintero, A., Husserl, J., & Barrios, A. F. G. (2019). Metagenome level metabolic network reconstruction analysis reveals the microbiome in the Bogotá River is functionally close to the microbiome in produced water. Ecological Modelling, 399, 1-12.

Deng, J., Auchtung, J. M., Konstantinidis, K. T., Caro-Quintero, A., Brettar, I., Höfle, M., & Tiedje, J. M. (2018). Divergence in gene regulation contributes to sympatric speciation of Shewanella baltica strains. Applied and environmental microbiology, 84(4).

Pacheco-Montealegre, M., Patiño, R. E., Torres, L., Jiménez, S., Rodríguez, J. L., & Caro-Quintero, A. (2017). The draft genome of Brucella abortus strain Ba col-B012, isolated from a dairy farm in Nariño, Colombia, bring new insights into the epidemiology of biovar 4 strains. Standards in genomic sciences, 12(1), 1-9.

Díaz-Cárdenas, C., Bernal, L. F., Caro-Quintero, A., López, G., Alzate, J. D., Gonzalez, L. N., ... & Baena, S. (2017). Draft genome and description of Consotaella salsifontis gen. nov. sp. nov., a halophilic, free-living, nitrogen-fixing alphaproteobacterium isolated from an ancient terrestrial saline spring. International journal of systematic and evolutionary microbiology, 67(10), 3744-3751.

Rodriguez-Castano, G. P., Caro-Quintero, A., Reyes, A., & Lizcano, F. (2016). Advances in Gut Microbiome research, opening new strategies to cope with a Western lifestyle. Frontiers in Genetics, 7, 224.

Moeller, A. H., Caro-Quintero, A., Mjungu, D., Georgiev, A. V., Lonsdorf, E. V., Muller, M. N., ... & Ochman, H. (2016). Cospeciation of gut microbiota with hominids. Science, 353(6297), 380-382.

Caro-Quintero, A., & Ochman, H. (2015). Assessing the unseen bacterial diversity in microbial communities. Genome biology and evolution, 7(12), 3416-3425.

Previous publications

Bristow, L. A., Sarode, N., Cartee, J., Caro‐Quintero, A., Thamdrup, B., & Stewart, F. J. (2015). Biogeochemical and metagenomic analysis of nitrite accumulation in the G ulf of M exico hypoxic zone. Limnology and Oceanography, 60(5), 1733-1750.

Caro-Quintero, A., & Konstantinidis, K. T. (2015). Inter-phylum HGT has shaped the metabolism of many mesophilic and anaerobic bacteria. The ISME journal, 9(4), 958-967.

Caro-Quintero, A., Auchtung, J., Deng, J., Brettar, I., Höfle, M., Tiedje, J. M., & Konstantinidis, K. T. (2012). Genome sequencing of five Shewanella baltica strains recovered from the oxic-anoxic interface of the Baltic Sea.

Caro‐Quintero, A., & Konstantinidis, K. T. (2012). Bacterial species may exist, metagenomics reveal. Environmental microbiology, 14(2), 347-355.

Caro-Quintero, A., Ritalahti, K. M., Cusick, K. D., Löffler, F. E., & Konstantinidis, K. T. (2012). The chimeric genome of Sphaerochaeta: nonspiral spirochetes that break with the prevalent dogma in spirochete biology. MBio, 3(3), e00025-12.

Oh, S., Caro-Quintero, A., Tsementzi, D., DeLeon-Rodriguez, N., Luo, C., Poretsky, R., & Konstantinidis, K. T. (2011). Metagenomic insights into the evolution, function, and complexity of the planktonic microbial community of Lake Lanier, a temperate freshwater ecosystem. Applied and environmental microbiology, 77(17), 6000-6011.

Caro-Quintero, A., Deng, J., Auchtung, J., Brettar, I., Höfle, M. G., Klappenbach, J., & Konstantinidis, K. T. (2011). Unprecedented levels of horizontal gene transfer among spatially co-occurring Shewanella bacteria from the Baltic Sea. The ISME journal, 5(1), 131-140.

Caro-Quintero, A., Rodriguez-Castaño, G. P., & Konstantinidis, K. T. (2009). Genomic insights into the convergence and pathogenicity factors of Campylobacter jejuni and Campylobacter coli species. Journal of bacteriology, 191(18), 5824-5831.