I've provided zips of entire simulations which include bash scripts, python scripts, and pbs scripts to do a variety of simulations and post-process the data. Some of the simulations require pyflamestk which I use to automate simulations.
The hardest part of installing LAMMPS is getting it to compile. However, I've gotten it to install on my macbook (without any advanced options) and Windows laptop (without any advanced options). Getting it to install on an MPI cluster, is another thing all together.
neighbor <skin> <style>
neigh_modify
thermo
thermo_style
thermo_modify
Tutorial
I found this tutorial very helpful in learning how to run LAMMP code
https://icme.hpc.msstate.edu/mediawiki/index.php/LAMMPS_tutorials
Workflow Notes
Visualization
Avogadro - http://avogadro.openmolecules.net/wiki/Main_Page
Ovito - http://www.ovito.org/
Pre-processing
Simulation
Post-processing
Polymer LAMMPS - https://icme.hpc.msstate.edu/mediawiki/index.php/LAMMPS_Polymer
Interatomic Potentials