EIGENSOFTplus

Files for enhanced use of Principal Components Analysis for performing GWAS QC and primary analysis. Please refer to Weale ME (2010), “Quality Control for Genome-Wide Association Studies”, in Genetic Variation: Methods and Protocols, Methods in Molecular Biology, vol. 628, pp.341-372 (Eds. M. R. Barnes and G. Breen). Humana Press.

For the list of high-LD regions used in analysis of samples of European ancestry, please refer to Price AL, Weale ME, Patterson N, et al. (2008), “Long-range LD can confound genome scans in admixed populations”, Am J Hum Genet 83: 132-5, Table 1.

EIGENSOFTplus_v10.zip