Files for calculating Bayes Factors for combining functional annotation with association information, especially in the context of Genome-wide Association Studies. Please refer to Knight J, Barnes MR, Breen G, Weale ME (2011), “Using Functional Annotation for the Empirical Determination of Bayes Factors for Genome-wide Association Study Analysis”, PLoS ONE 6: e14808.
PLINK2wakefieldBF.R = R function (Unix text format) for generating BFassoc values from PLINK output files, using the approximate method of Wakefield (2007, 2009).
Annot.zip = Text file (Unix format) with BFannot values for each SNP in the combined Affy500+Illu550 panel + README file.