Publications

    Publications by Year / Publications by Topics     [NCBI Bibliography[Google Scholar] [DBLP] [ResearchGate[PubMed
    Refereed Journal Papers (N=13) (* denotes corresponding author, underline denotes my students)
  1. Zhe He*, Cui Tao, Jiang Bian, Michel Dumontier, and William Hogan. Semantics-Powered Healthcare Engineering and Data Analytics. Journal of Healthcare Engineering. 2017. In press. (SCIE, Editorial of the JHE Special Issue)

  2. Zhe He*, Zhiwei Chen, Sanghee Oh, Jinghui Hou, and Jiang Bian. Enriching consumer health vocabulary through mining a social Q&A site: a similarity-based approach. Journal of Biomedical Informatics. 2017;69:75-85. PMID: 28359728 (SCI, Impact Factor: 2.75, 5-Year Impact Factor: 3.23) [PubMed] [ScienceDirect] [PDF]

  3. Min Sook Park, Zhe He*Zhiwei Chen, Sanghee Oh, and Jiang Bian. Consumer's Use of UMLS Concepts on Social Media: Diabetes-Related Textual Data Analysis in Blog and Social Q&A Sites. JMIR Medical Informatics. 2016; 4(4):e41. PMID: 27884812 (Park and He are equal-contribution first authors) (ESCI) [JMIR] [PubMed] [PMC] [PDF

  4. Jiang Bian, Kenji Yoshigoe, Amanda Hicks, Jiawei Yuan, Zhe He, Mengjun Xie, Yi Guo, Mattia Prosperi, and François Modave. Mining Twitter to assess the public perception of the "Internet of things"PLoS ONE. 2016;11(7): e0158450. PMID: 27391760 (SCI, Impact Factor: 3.06) [PLoS ONE] [PubMed] [PMC] [PDF]

  5. Christopher Ochs*, Zhe He, Ling Zheng, James Geller, Yehoshua Perl, George Hripcsak, and Mark Musen. Utilizing a structural meta-ontology for family-based quality assurance of the BioPortal ontologies. Journal of Biomedical Informatics. 2016;61:63-76. PMID: 26988001 (SCI, Impact Factor: 2.75, 5-Year Impact Factor: 3.23) [ScienceDirect] [PubMed] [PMC] [PDF]

  6. Zhe He*, Patrick Ryan, Julia Hoxha, Shuang Wang, Simona Carini, Ida Sim, and Chunhua Weng. Multivariate analysis of the population representativeness of related clinical studiesJournal of Biomedical Informatics. 2016;60:66-76. PMID: 26820188. (SCI, Impact Factor: 2.75, 5-Year Impact Factor: 3.23) [ScienceDirect] [PubMed] [PMC] [PDF]

  7. Huanying Gu*, Yan Chen, Zhe He, Michael Halper, and Ling Chen. Quality Assurance of UMLS Semantic Type Assignments Using SNOMED CT HierarchiesMethods of Information in Medicine. 2016; 55(2):158-165. PMID: 25925776. (SCI, Impact Factor: 2.25) [Schattauer] [PubMed

  8. Julia Hoxha, Praveen Chandar, Zhe He, David Hanauer, James J Cimino, and Chunhua Weng*. DREAM: Classification Scheme for Dialog Acts in Clinical Research Data Query MediationJournal of Biomedical Informatics. 2016;59:89-101. PMID: 26657707. (SCI, Impact Factor: 2.75, 5-Year Impact Factor: 3.23) [ScienceDirect] [PubMed] [PMC] [PDF]

  9. Zhe He*, James Geller, and Yan Chen. A comparative analysis of the density of the SNOMED CT conceptual content for semantic harmonization. Artificial Intelligence in Medicine. 2015;64(1):29-40. PMID: 25890688. (SCI, Impact Factor: 2.01, 5-Year Impact Factor: 2.34) [ScienceDirect] [PubMed] [PMC] [PDF] (Invited Talk at IHTSDO Implementation SIG Webinar [Slides] [Video](#14 Hottest Article April - June 2015)

  10. Zhe He, Simona Carini, Ida Sim, and Chunhua Weng*. Visual aggregate analysis of eligibility features of clinical trials. Journal of Biomedical Informatics. 2015;54:241-255. PMID: 25615940. (SCI, Impact Factor: 2.75, 5-Year Impact Factor: 3.23) [ScienceDirect] [PubMed] [PMC] [PDF[Link to VITTA System] (Clinical Research Informatics 2016 Year in Review)

  11. Zhe He*, C. Paul Morrey, Yehoshua Perl, Gai Elhanan, Ling Chen, Yan Chen, and James Geller. Sculpting the UMLS Refined Semantic Network. Online Journal of Public Health Informatics. 2014;(6)2:e181. PMID: 25422719. [PubMed] [PMC] [PDF]

  12. Ankur Agrawal*, Zhe He, Duo Wei, Michael Halper, Yehoshua Perl, and Gai Elhanan. The readiness of SNOMED problem list concepts for meaningful use of electronic health records. Artificial Intelligence in Medicine. 2013;(58)2:73-80. PMID:23602702. (SCI, Impact Factor: 2.01, 5-Year Impact Factor: 2.34) [ScienceDirect] [PubMed] [PDF(#12 Hottest Article)

  13. James Geller, Zhe He*, Yehoshua Perl, C. Paul Morrey, and Julia Xu. Rule-based support system for multiple UMLS semantic type assignments. Journal of Biomedical Informatics, 2013;(46)1:97-110. PMID: 23041716. (SCI, Impact Factor: 2.75, 5-Year Impact Factor: 3.23) [ScienceDirect] [PubMed] [PMC] [PDF] [Link to adviseEditor]. (#23 Hottest Article Oct - Dec 2012)

  14. Refereed Papers in Proceedings of Conferences, Symposiums, and Workshops (N=29)

  15. Jinchan Qu, Albert Steppi, Jie Hao, Jian Wang, Pei-Yau Lung, Tinting Zhao, Zhe He and Jinfeng Zhang. Mining protein interactions affected by mutations using a NLP based machine learning approach. Proceedings of BioCreative VI Challenge and Workshop. October 18-20, 2017 Bethesda, MD. pp. 132-135. (Invited to give an oral presentation at BioCreative VI Track 4: Mining protein interactions and mutations for precision medicine)

  16. Pei-Yau Lung, Tingting Zhao, Zhe He and Jinfeng ZhangExtracting chemical-protein compound interactions from literature. Proceedings of BioCreative VI Challenge and WorkshopOctober 18-20, 2017. Bethesda, MD. pp. 160-163. (Invited to give an oral presentation at BioCreative VI Track 5: Text mining chemical protein interactions)

  17. Antonio Lossio-Ventura, William Hogan, Francois Modave, Yi Guo, Zhe He, Amanda Hicks, and Jiang Bian, OC-2-KB: A software pipeline to build an evidence-based obesity and cancer knowledge base. Proceedings of 2017 IEEE International Conference on Bioinformatics and Biomedicine. November 13 - 16, 2017. Kansas City, MO. In press.

  18. Biyang Yu and Zhe He. Exploratory Textual Analysis of Consumer Health Languages for People Who are Deaf/Hard of HearingProceedings of 2017 IEEE International Conference on Bioinformatics and BiomedicineNovember 13 - 16, 2017. Kansas City, MO. In press.

  19. Zhiwei ChenZhe He, Xiuwen Liu, and Jiang Bian. An Exploration of Semantic Relations in Neural Word Embeddings Using Extrinsic KnowledgeProceedings of 2017 IEEE International Conference on Bioinformatics and BiomedicineNovember 13 - 16, 2017. Kansas City, MO. In press. [PDF]

  20. Zhe He, Yehoshua Perl, Gai Elhanan, Yan Chen, James Geller, and Jiang Bian. Auditing the Assignments of Top-Level Semantic Types in the UMLS Semantic Network to UMLS ConceptsProceedings of 2017 IEEE International Conference on Bioinformatics and Biomedicine. November 13 - 16, 2017. Kansas City, MO. In press. [PDF]

  21. James Geller, Vipina Kuttichi Keloth, and  Zhe He. Observation on a Potential Structure Problem in SNOMED CT. Symposium on Data Science for Healthcare (DaSH 2017). October 19 - 20, 2017. Ridgefield, CT.

  22. Zhe He, Arturo Gonzalez-Izquierdo, Spiros Denaxas, Andrei Sura, Yi Guo, William R. Hogan, Elizabeth Shenkman, and Jiang Bian. Comparing and Contrasting A Priori and A Posteriori Generalizability Assessment of Clinical Trials on Type 2 Diabetes Mellitus. Proceedings of American Medical Informatics Association 2017 Annual Symposium (AMIA 2017). November 4-8, 2017. Washington DC. In press. [PDF]

  23. Zhe He, Yan Chen, and James Geller. Perceiving the Usefulness of National Cancer Institute Metathesaurus for Enriching NCIt with Topological Patterns. The 16th World Congress on Medical and Health Informatics (MEDINFO 2017). August 21-25, 2017. Hangzhou, China. Studies in Health Technology and Informatics. In press. [PDF]

  24. Juan Antonio Lossio-Ventura, William Hogan, François Modave, Amanda Hicks, Yi Guo, Zhe He, and Jiang Bian. Towards an Obesity-Cancer Knowledge Base: Biomedical Entity Identification and Relation Detection. Proceedings of 2016 IEEE International Conference on Bioinformatics and Biomedicine (BIBM 2016). December 15-18, 2016. Shenzhen, China. pp. 1081-1088. DOI: 10.1109/BIBM.2016.7822672. PMID:  28503356 [IEEE] [PubMed] [PMC] [PDF]

  25. Zhe He, Zhiwei Chen, and Jiang Bian. Analysis of Temporal Constraints in Qualitative Eligibility Criteria of Cancer Clinical StudiesProceedings of 2016 IEEE International Conference on Bioinformatics and Biomedicine (BIBM 2016). December 15-18, 2016. Shenzhen, China. pp. 717-722. DOI: 10.1109/BIBM.2016.7822607. (Acceptance rate: 19%) [IEEE] [PDF]

  26. Zhe He, Yan Chen, Sherri de Coronado, Katrina Piskorskiand James Geller. Topological-Pattern-based Recommendation of UMLS Concepts for National Cancer Institute Thesaurus. Proceedings of American Medical Informatics Association 2016 Annual Symposium (AMIA 2016). November 12-16, 2016. Chicago, IL. pp. 618-627. PMID: 28269858 [Talk Slides] [PubMed] [PMC

  27. Zhe He, Zhiwei Chen, Thomas J George, Gloria Lipori, and Jiang Bian. Assessing the Population Representativeness of Colorectal Cancer Treatment Clinical Trials. Proceedings of the 38th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC 2016). August 16-20, 2016. Orlando, FL. pp.2970-2973. PMID: 28268936 (Acceptance rate for oral presentations: 20%) [IEEE] [PubMed]

  28. Zhe He and James Geller. Preliminary Analysis of Difficulty of Importing Pattern-Based Concepts into the National Cancer Institute ThesaurusStudies in Health Technology and Informatics2016. Volume 288: Exploring the Complexity in Health: An Interdisciplinary Systems Approach: 389-393. Medical Informatics Europe 2016 (MIE 2016). August 28 - September 2, 2016. Munich, Germany. PMID: 27577410. [IOS Press] [PubMed]

  29. Zhe He*, Min Sook Park*, and Zhiwei ChenUMLS-Based Analysis of Medical Terminology Coverage for Tags in Diabetes-Related Blogs (*: equal contribution). Proceedings of iConference 2016.  March 20-23, 2016. Philadelphia, PA. (Acceptance rate: 30%) (Runner up of the Most Interesting Preliminary Results Paper Award, Top 5) [Award Certificate] [Link] [PDF]

  30. Zhe He, Neil Charness, Jiang Bian, and William R. Hogan. Assessing the Comorbidity Gap between Clinical Studies and Prevalence in Elderly Patient Populations.  Proceedings of 2016 IEEE International Conference on Biomedical and Health Informatics (BHI 2016). February 24-27, 2016. Las Vegas, NV. pp.136-139. PMID: 27738664. [PDF] [IEEE Xplore] [PubMed] [PMC]

  31. Cilia Zayas, Zhe He, Jiawei Yuan, Mildred Maldonado-Molina, William R. Hogan, François Modave, and Jiang Bian. Examining Healthcare Utilization Patterns of Elderly and Mid-Aged Adults in the United States. Proceedings of the 29th International FLAIRS Conference (FLAIRS-29). May 16-18, 2016. Key Largo, FL. pp.361-366. PMID: 27430035. [AAAI] [PubMed] [PMC]

  32. Zhe He, Praveen Chandar, Patrick Ryan, and Chunhua Weng. Simulation-based Evaluation of the Generalizability Index for Study TraitsProceedings of American Medical Informatics Association 2015 Annual Symposium (AMIA 2015). November 14-18, 2015. San Francisco, CA. pp.594-603. PMID: 26958194 (Distinguished Paper Award of AMIA 2015 Annual Symposium [Official Announcement] [Award Certificate] [News Article])  [PDF] [PubMed] [PMC(Clinical Research Informatics 2016 Year in Review)

  33. Praveen Chandar, Anil Yaman, Julia Hoxha, Zhe He, and Chunhua Weng. Similarity-based Recommendation of New Concepts to a TerminologyProceedings of American Medical Informatics Association 2015 Annual Symposium (AMIA 2015). November 14-18, 2015. San Francisco, CA. pp.386-395. PMID: 26958170 [PubMed] [PMC]

  34. Zhe He, Shuang Wang, Elhaam Borhanian, and Chunhua Weng. Assessing the Collective Population Representativeness of Type 2 Diabetes Trials by Combining Public Data from ClinicalTrials.gov and NHANES. Proceedings of MEDINFO 2015, August 19-23, 2015, Sao Paulo, Brazil. Studies in Health Technology and Informatics. 2015;216:569-73. PMID: 26262115 [PDF]  (Student Paper Award Nominee[PubMed] [PMC] [IOS Press]

  35. Zhe He, and Chunhua Weng. Predicting New Target Conditions for Drug Retesting Using Temporal Patterns in Clinical Trials: A Proof of Concept. Proceedings of American Medical Informatics Association 2015 Joint Summits on Translational Science, 2015;445-9. PMID: 26306283. (Acceptance rate: 25%) (Student Paper Competition Finalist[PDF] [PubMed] [PMC] [Talk Slides]

  36. Zhe He, Simona Carini, Tianyong Hao, Ida Sim, and Chunhua Weng. A Method for Analyzing Commonalities in Clinical Trial Target Populations. Proceedings of American Medical Informatics Association 2014 Annual Symposium (AMIA 2014), November 15 - 19, 2014, Washington D.C. pp.1777-1786. PMID: 25954450. [PubMed] [PMC] [PDF] [Talk Slides]

  37. Chunhua Weng, Anil Yaman, Kuo Lin, and Zhe He. Trend and Network Analysis of Common Eligibility Features for Cancer Trials in ClinicalTrials.gov. Proceedings of 2014 International Conference for Smart Health, July 10 - 11, 2014, Beijing, China. Smart Health, Lecture Notes in Computer Science, Volume 8549:130-141. PMID: 26998530. [Springer] [PubMed] [PMC] [PDF

  38. Zhe He, James Geller, and Gai Elhanan. Categorizing the Relationships between Structurally Congruent Concepts from Pairs of Terminologies for Semantic Harmonization. Proceedings of 2014 American Medical Informatics Association Joint Summits on Translational Science, April 4 - 11, 2014, San Francisco, CA. pp. 48-53. PMID: 25717400 [PubMed] [PMC] [PDF] [Talk Slides]

  39. Zhe He, Christopher Ochs, Ankur Agrawal, Yehoshua Perl, Dimitrios Zeginis, Konstantinos Tarabanis, Gai Elhanan, Michael Halper, Natasha Noy, and James Geller. A Family-Based Framework for Supporting Quality Assurance of Biomedical Ontologies in BioPortal. Proceedings of American Medical Informatics Association 2013 Annual Symposium (AMIA 2013), November 16 - 20, 2013, Washington D.C. pp. 581-90. PMID: 24551360. (Selection for the "Ontology" paper of the year featured in the  "Informatics Year in Review"[PubMed] [PMC] [PDF] [Talk Slides]

  40. Christopher Ochs, Zhe He, Yehoshua Perl, Sivaram Arabandi, James Geller, and Michael Halper. Choosing the Granularity of Abstraction Networks for Orientation and Quality Assurance of the Sleep Domain Ontology. Proceedings of the 4th International Conference on Biomedical Ontology (ICBO 2013), July 8 and 9, 2013. Montreal, Qc, Canada. CEUR Proceedings Volume 1060:84-9. [PDF

  41. Zhe He, Christopher Ochs, Larisa Soldatova, Yehoshua Perl, Sivaram Arabandi, and James Geller. Auditing Redundant Import in Reuse of a Top Level Ontology for the Drug Discovery Investigations Ontology. Proceedings of 2013 International Workshop on Vaccine and Drug Ontology Studies (VDOS 2013) (co-located with ICBO 2013), July 7, 2013. Montreal, Qc, Canada. CEUR Proceedings Volume 1061 [PDF] [Talk Slides]

  42. Zhe He, Michael Halper, Yehoshua Perl, and Gai Elhanan. Clinical Clarity versus Terminological Order - the Readiness of SNOMED CT Concept Descriptors for Primary Care. Proceedings of the 2nd International Workshop on Managing Interoperability and Complexity in Health Systems (MIXHS 2012) (co-located with CIKM 2012). October 29, 2012.  Maui, HI, USA. pp.1-6. PMID: 26870837 [ACM Digital Library] [PubMed][PMC] [PDF] [Talk Slides]

  43. Huanying Gu, Gai Elhanan, Michael Halper, and Zhe He. Questionable Relationship Triples in the UMLS. Proceedings of 2012 IEEE-EMBS International Conference on Biomedical and Health Informatics (BHI 2012), January 2-7 2012. Hong Kong and Shenzhen, China. pp.713-6. [IEEE Xplore] [PDF] [Talk Slides] 

    Refereed Conference Panel Abstracts (N=2)


  44. Zhe He, Duo Wei, Jiang Bian, Jianlin Liu, and Yang Gong. Advancing Health Informatics Education and Health IT Workforce Development through Interdisciplinary CollaborationThe 16th World Congress on Medical and Health Informatics (MEDINFO 2017). August 21-25, 2017. Hangzhou, China.

  45. Chunhua Weng, Zhe He, Mollie McKillop, and Joseph Romano. Data Driven Clinical Research Generalizability Assessment and ImprovementThe 8th Annual Mid-Atlantic Healthcare Informatics Symposium, October 23, 2015, Philadelphia, PA. 

  46. Refereed Presentations (Conference Poster/Podium Abstracts) (N=13)
  47. Biyang Yu, Lynette Gerido, and Zhe He. Exploring Text Classification of Social Support in Online Health Communities for People Who are D/deaf and Hard of Hearing. Proceedings of the 80th Annual Meeting of the Association for Information Science and Technology (ASIS&T 2017), Washington DC. October 27 - November 1, 2017 (Visual Presentation Abstract)

  48. Lynette Gerido, Michelle Kazmer, Zhe He, and Marcia Mardis. Emergent Trends in Research to Increase Participation in Cancer Clinical Trials by Underrepresented Population: A Qualitative Analysis of the HSRProj DatabaseProceedings of the 80th Annual Meeting of the Association for Information Science and Technology (ASIS&T 2017), Washington DC. October 27 - November 1, 2017 (Visual Presentation Abstract)

  49. Jiang Bian, Andrei Sura, Yi Guo, François Modave, Zhe He, Elizabeth Shenkman, and William Hogan.  Implementing a Hash-based Privacy-Preserving Entity Resolution Tool in the OneFlorida Clinical Data Research Network. American Medical Informatics Association 2017 Annual Symposium (AMIA 2017). November 4-8, 2017. Washington DC. In press. (Poster)

  50. Zhe He, Zhiwei Chen, Sarah Mixon, and Jiang Bian. A Visual Analysis Tool for Qualitative Eligibility Criteria of Clinical StudiesAmerican Medical Informatics Association 2017 Annual Symposium (AMIA 2017). November 4-8, 2017.Washington DC. In press. (Poster)

  51. Juan Antonio Lossio-Ventura, William Hogan, François Modave,  Amanda Hicks, Yi Guo, Zhe He, Mirela Vasconcelos, and Jiang Bian. Building an Obesity and Cancer Semantic Web Knowledge BaseAmerican Medical Informatics Association 2017 Annual Symposium (AMIA 2017). November 4-8, 2017. Washington DC. In press. (Poster)

  52. Zhe He and Aisha Langford. Comparative Analysis of Geriatric and Adult Drug Clinical Trials on ClinicalTrials.govThe 16th World Congress on Medical and Health Informatics (MEDINFO 2017).  August 21-25, 2017. Hangzhou, China. (Poster)

  53. Tianyao Huo, Thomas J. George, Yi Guo, Zhe He, Mattia Prosperi, François Modave, and Jiang Bian. Explore Care Pathways of Colorectal Cancer Patients with Social Network AnalysisThe 16th World Congress on Medical and Health Informatics (MEDINFO 2017).  August 21-25, 2017. Hangzhou, China. (Poster)

  54. Natasha Williams, Zhe He, Andrea Barnes, Aisha Langford, and Girardin Jean-Louis. Minority participation in clinical trials for obstructive sleep apnea and insomniaSLEEP 2017, June 3-7, 2017.Boston, MA. (Poster). 

  55. Aisha Langford and Zhe He, Eligibility Criteria for Hypertension-Related Interventions: Are Blacks Included?" The 38th Annual Meeting and Scientific Sessions of the Society of Behavioral Medicine (SBM 2017). March 29 - April 1, 2017. San Diego, CA. (Poster)

  56. Zhe He, Zhiwei Chen, Sarah Mixon, Juan Antonio Loss-Ventua, and Jiang Bian. Developing a Parser to Structure Free-Text Qualitative Eligibility Criteria in Clinical Trials. 2017 Florida Undergraduate Research Conference. February 24-25, 2017. Miami, FL. (Poster)

  57. Amanda Hicks, William R. Hogan, Zhe He, Josh Hanna, Besty Shenkman, Jiawei Yuan, Jiang Bian. Using Semantic Queries for Cohort Discovery Across Research Networks. OHDSI Symposium 2015. October 20, 2015, Washington DC. (Poster)

  58. Zhe He, Patrick Ryan, Shuang Wang, and Chunhua Weng. A Method for Assessing the Collective Population Representativeness of Multiple Related Clinical Trials Using Public Data. Proceedings of AMIA 2015 Joint Summits on Translational Science, March 23 - 27, 2015, San Francisco, CA. pp. 255-256 (Oral Presentation) [Talk Slides]

  59. James Geller, Christopher Ochs, Zhe He, and Yehoshua Perl. A Structural Meta-ontology for the BioPortal ontologies. Proceedings of Bio-ontologies 2013 (co-located with ISMB/ECCB 2013), July 20, Berlin, Germany. (Poster)
    Non-Refereed Presentations (Conference Posters)
  1. Lynette Gerido, and Zhe He. Factors Influencing Cancer Clinical Trials Information Seeking Behaviors in Underrepresented Populations. ALISE 2018. February 6-9, 2018. Denver, CO 
    Edited Book
  1. Jiang Bian, Zhe He, Yi Guo, and Xia Hu. Social Web and Health Research - Benefits, Limitations and Best Practice. Springer International Publishing AG. (Contracted, to be published in December 2018)

  2. Doctoral Dissertation
    Zhe He. Using Structural and Semantic Methodologies to Enhance Biomedical Terminologies. PhD dissertation. New Jersey Institute of Technology, Newark, NJ. 2013. [ProQuest]
    Papers Under Review

  1. Zhe He, Jiang Bian, Henry Carretta, Jiwon Lee, William Hogan, Elizabeth Shenkman, and Neil Charness.  Comparative analysis of prevalence of multiple chronic conditions among older adults in Florida and the United States: Estimates from the OneFlorida Clinical Research Consortium Data Trust and National Inpatient Sample.  Journal of Medical Internet Research. Under review.

  2. Muhammad F. Amith*, Zhe He*, Jiang Bian, Juan Antonio Lossio-Ventura, and Cui Tao. Assessing the Practice of Ontology Evaluation for Biomedical Ontologies in BioPortal: Gaps and Opportunities. Under preparation. Journal of Biomedical Informatics. (Amith and He are equal-contribution first authors) Under review.

  3. Jinghui Hou, Joshua Hendrickse, Zhe He, Jingbo Meng, Hansi Zheng, Sanghee Oh, and Jiang Bian. Health Information Seeking Over Time: A Qualitative Analysis of Information Needs of Patients with Chronic Diseases on a Social Q&A Site. Journal of the Association for Information Science and Technology. Under review.

  4. Daniel R. Schelgel, Jodi Schneider, David Booth, R Cornet, Syed Waseem Haider, Oktie Hassanzadeh, Zhe He, Xia Jiang, Vassilis Koutkias, Raymond Francis Sarmiento, Dmitry Shin, Shyam Visweswaran, Victoria Wangie-Anderson, Michel Dumontier, and members of the AMIA KRS Working Group. Knowledge Representation in Biomedicine. Journal of Biomedical Informatics. Under review.

  5. Zhe He, Yan Chen, and James Geller. Extended Analysis of Topological-Pattern-Based Ontology Enrichment. Artificial Intelligence in Medicine. Under review.

  6.  Juan Antonio Lossio-Ventura, William Hogan, François Modave, Amanda Hicks, Yi Guo, Zhe He, Mirela Vasconcelos, and Jiang Bian. Automatic construction of an obesity and cancer knowledge base from biomedical literature. BMC Medical Informatics and Decision Making. Under review.

  7. Huanying Gu, Yan Chen, Zhe He, Duo Wei, and Gai Elhanan. Validating UMLS Semantic Type assignments Using SNOMED CT Semantic Tags. Methods of Information in Medicine. Under review.  
    Working Papers
  1. Aisha Langford and Zhe HeRacial disparities in depression clinical trials (working title).  Under preparation.

  2. Natasha Williams, Zhe He, Andrea Barnes, and Aisha Langford. Racial and ethnic disparities in obstructive sleep apnea and insomnia clinical trials. Under preparation. Target Journal: Sleep Medicine

  3. Zhe He, Henry Carretta, Jiwon Lee, and Jiang Bian. Assessing the Representation of Older Adults with Multiple Chronic Medical Conditions in Cancer Treatment Clinical Trials. Under preparation.