Publications


Supplementary online material for some papers can be found here.

Selected conference abstracts can be found here (more to come).

A few favourite papers 

Bogler C, Bode S, Haynes JD. Decoding successive computational stages of saliency processing. Curr Biol. 2011 Oct 11;21(19):1667-71. Epub 2011 Sep 29. PubMed PMID: 21962709.

Chen, Y,, Namburi, P., Elliott, L.T., Heinzle, J., Soon, C.S., Chee, M.W. & Haynes, J.D. (2010). Cortical surface-based searchlight decoding. Neuroimage 56, 582-92.

Haynes, J.D., Sakai, K., Rees, G., Gilbert, S., Frith, C. & Passingham, D. (2007). Reading hidden intentions in the human brain. Current Biology 17, 323-328.

Heinzle, J., Kahnt, T. & Haynes, J.D. Topographically specific functional connectivity between visual field maps in the human brain. Neuroimage 56, 1426-36.

Kahnt, T., Grueschow, M., Speck, O. & Haynes, J.D. (2011). Perceptual learning and decision-making in human medial frontal cortex. Neuron 70, 549-59.

Kahnt, T., Heinzle, J., Park, S.Q. & Haynes, J.D. (2010). The neural code of reward anticipation in human orbitofrontal cortex. Proceedings of the National Academy of Sciences of the USA 107, 6010-5.

Soon CS, He AH, Bode S, Haynes JD. (2013). Predicting free choices for abstract intentions. Proc Natl Acad Sci U S A 110(15):6217-22.

Soon, C.S., Brass, M., Heinze, H.J.& Haynes, J.D. (2008). Unconscious determinants of free decisions in the human brain. Nature Neuroscience 11, 543-5.

Tusche, A., Bode, S. & Haynes, J.D. (2010). Neural responses to unattended products predict later consumer choices. Journal of Neuroscience 30, 8024-31.



Full List of Original Work in Peer-Reviewed Journals 


Soon CS, He AH, Bode S, Haynes JD. (2013). Predicting free choices for abstract intentions. Proc Natl Acad Sci U S A 110(15):6217-22.

Bogler C, Bode S, Haynes JD. Orientation pop-out processing in human visual cortex. Neuroimage. 2013 May 17;81C:73-80.

Tusche A, Kahnt T, Wisniewski D, Haynes JD. Automatic processing of political preferences in the human brain. Neuroimage. 2013 May 15;72:174-82.

Reverberi C, Görgen K, Haynes JD. Distributed representations of rule identity and rule order in human frontal cortex and striatum. J Neurosci. 2012 Nov 28;32(48):17420-30.

Kuhlen AK, Allefeld C, Haynes JD. Content-specific coordination of listeners' to speakers' EEG during communication. Kuhlen AK, Allefeld C, Haynes JD. Front Hum Neurosci. 2012;6:266. doi: 10.3389/fnhum.2012.00266.

Bode S, Bogler C, Haynes JD. Similar neural mechanisms for perceptual guesses and free decisions. Neuroimage. 2013 Jan 15;65:456-65. doi: 10.1016/j.neuroimage.2012.09.064. Epub 2012 Oct 3. PubMed PMID: 23041528.

Christophel TB, Hebart MN, Haynes JD. Decoding the contents of visual short-term memory from human visual and parietal cortex. J Neurosci. 2012 Sep 19;32(38):12983-9. PubMed PMID: 22993415.

Hebart MN, Donner TH, Haynes JD. Human visual and parietal cortex encode visual choices independent of motor plans. Neuroimage. 2012 Nov 15;63(3):1393-403. doi: 10.1016/j.neuroimage.2012.08.027. Epub 2012 Aug 16. PubMed PMID: 22922368.

Weygandt M, Schaefer A, Schienle A, Haynes JD. Diagnosing different binge-eating disorders based on reward-related brain activation patterns. Hum Brain Mapp. 2012 Sep;33(9):2135-46. doi: 10.1002/hbm.21345. Epub 2011 Aug 30. PubMed PMID: 22887826.

Imamoglu F, Kahnt T, Koch C, Haynes JD. Changes in functional connectivity support conscious object recognition. Neuroimage. 2012 Dec;63(4):1909-17. doi: 10.1016/j.neuroimage.2012.07.056. Epub 2012 Aug 2. PubMed PMID: 22877578.

Heinzle J, Wenzel MA, Haynes JD. Visuomotor functional network topology predicts upcoming tasks. J Neurosci. 2012 Jul 18;32(29):9960-8. doi: 10.1523/JNEUROSCI.1604-12.2012. PubMed PMID: 22815510.

Kahnt T, Chang LJ, Park SQ, Heinzle J, Haynes JD. Connectivity-based parcellation of the human orbitofrontal cortex. J Neurosci. 2012 May 2;32(18):6240-50. doi: 10.1523/JNEUROSCI.0257-12.2012. PubMed PMID: 22553030.

Hackmack K, Paul F, Weygandt M, Allefeld C, Haynes JD. Multi-scale classification of disease using structural MRI and wavelet transform. Neuroimage. 2012 Aug 1;62(1):48-58.

Herrmann B, Maess B, Kalberlah C, Haynes JD, Friederici AD. Auditory perception and syntactic cognition: brain activity-based decoding within and across subjects. Eur J Neurosci. 2012 Apr 17. doi: 10.1111/j.1460-9568.2012.08053.x


Hackmack K, Weygandt M, Wuerfel J, Pfueller CF, Bellmann-Strobl J, Paul F, Haynes JD. Can we overcome the 'clinico-radiological paradox' in multiple sclerosis? J Neurol. 2012 Mar 24.


Momennejad I, Haynes JD. Human anterior prefrontal cortex encodes the 'what' and 'when' of future intentions. Neuroimage. 2012 Mar 6. [Epub ahead of print] PubMed PMID: 22418393.


Kotz SA, Kalberlah C, Bahlmann J, Friederici AD, Haynes JD. Predicting vocal emotion expressions from the human brain. Hum Brain Mapp. 2012 Feb 27. doi: 10.1002/hbm.22041. [Epub ahead of print] PubMed PMID: 22371367. 


Cichy RM, Sterzer P, Heinzle J, Elliott LT, Ramirez F, Haynes JD. Probing principles of large-scale object representation: Category preference and location encoding. Hum Brain Mapp. 2012 Feb 27. doi: 10.1002/hbm.22020. [Epub ahead of print] PubMed PMID: 22371355.


Weygandt M, Blecker CR, Schäfer A, Hackmack K, Haynes JD, Vaitl D, Stark R, Schienle A. fMRI pattern recognition in obsessive-compulsive disorder. Neuroimage. 2012 Apr 2;60(2):1186-93. Epub 2012 Jan 17. PubMed PMID: 22281674.


Heinzle J, Allefeld C, Haynes JD. Information flow, dynamical systems theory and the human brain: Comment on "Information flow dynamics in the brain" by M.I. Rabinovich et al. Phys Life Rev. 2012 Mar;9(1):78-9. Epub 2011 Dec 28. PubMed PMID: 22237168.


Kahnt T, Heinzle J, Park SQ, Haynes JD. Decoding the formation of reward predictions across learning. J Neurosci. 2011 Oct 12;31(41):14624-30. PubMed PMID: 21994378.


Bogler C, Bode S, Haynes JD. Decoding successive computational stages of saliency processing. Curr Biol. 2011 Oct 11;21(19):1667-71. Epub 2011 Sep 29. PubMed PMID: 21962709.


Bode S, Bogler C, Soon CS, Haynes JD. The neural encoding of guesses in the human brain. Neuroimage. 2012 Jan 16;59(2):1924-31. Epub 2011 Sep 10. PubMed PMID: 21933719.


Reverberi C, Görgen K, Haynes JD. Compositionality of Rule Representations in Human Prefrontal Cortex. Cereb Cortex. 2011 Aug 4. [Epub ahead of print] PubMed PMID: 21817092.


Bode S, He AH, Soon CS, Trampel R, Turner R, Haynes JD. Tracking the unconscious generation of free decisions using ultra-high field fMRI. PLoS One. 2011;6(6):e21612. Epub 2011 Jun 27. PubMed PMID: 21760881; PubMed Central PMCID: PMC3124546. 


Kahnt, T., Grueschow, M., Speck, O. & Haynes, J.D. (2011). Perceptual learning and decision-making in human medial frontal cortex. Neuron 70, 549-59.

 

Cichy, R.M., Heinzle, J. & Haynes, J.D. (2011). Imagery and Perception Share Cortical Representations of Content and Location. Cerebral Cortex [Epub ahead of print] PubMed PMID: 21666128.

 

Bode, S., He, A.H., Soon, C.S., Trampel, R., Turner, R. & Haynes, J.D. (2011). Tracking the Unconscious Generation of Free Decisions Using UItra-High Field fMRI. PLoS One 6, e21612.

 

Weygandt, M., Hackmack, K., Pfüller, C., Bellmann-Strobl, J., Paul, F., Zipp, F. & Haynes, J.D. (2011). MRI pattern recognition in multiple sclerosis normal-appearing brain areas. PLoS One 6, e21138.

 

Gomez, A., Rothkirch, M., Kaul, C., Weygandt, M., Haynes, J.D., Rees, G. & Sterzer, P. (2011). Emotion modulates the effects of endogenous attention on retinotopic visual processing. Neuroimage 57, 1542-51.

 

Herrmann, B., Obleser, J., Kalberlah, C., Haynes, J.D. & Friederici, A.D. (2011). Dissociable neural imprints of perception and grammar in auditory functional imaging. Human Brain Mapping. [Epub ahead of print] PubMed PMID: 21391281.

 

Heinzle, J., Kahnt, T. & Haynes, J.D. Topographically specific functional connectivity between visual field maps in the human brain. Neuroimage 56, 1426-36.

 

Cichy, R.M., Chen, Y. & Haynes, J.D. (2011). Encoding the identity and location of objects in human LOC. Neuroimage 54, 2297-307.

 

Lizier, J.T., Heinzle, J., Horstmann, A., Haynes, J.D. & Prokopenko M. (2011). Multivariate information-theoretic measures reveal directed information structure and task relevant changes in fMRI connectivity. Journal of Computational Neuroscience 30, 85-107.

 

Chen, Y,, Namburi, P., Elliott, L.T., Heinzle, J., Soon, C.S., Chee, M.W. & Haynes, J.D. (2010). Cortical surface-based searchlight decoding. Neuroimage 56, 582-92.

 

Anders, S., Heinzle, J., Weiskopf, N., Ethofer, T. & Haynes, J.D. (2011). Flow of affective information between communicating brains. Neuroimage 54, 439-46.

 

Kahnt, T., Heinzle, J., Park, S.Q. & Haynes, J.D. (2011). Decoding different roles for vmPFC and dlPFC in multi-attribute decision making. Neuroimage 56, 709-15.

 

Kahnt, T., Heinzle, J., Park, S.Q. & Haynes, J.D. (2010). The neural code of reward anticipation in human orbitofrontal cortex. Proceedings of the National Academy of Sciences of the USA 107, 6010-5.

 

Tusche, A., Bode, S. & Haynes, J.D. (2010). Neural responses to unattended products predict later consumer choices. Journal of Neuroscience 30, 8024-31.

 

Howard, J.D., Plailly, J., Grueschow, M., Haynes, J.D. & Gottfried, J.A. (2009). Odor quality  coding and categorization in human posterior piriform cortex. Nature Neuroscience 12, 932-938.

 

Corney, D., Haynes, J.D., Rees, G. & Lotto, R.B. (2009). The brightness of colour. PLoS One 4, e5091.

 

Bode, S. & Haynes, J.D. (2009). Decoding sequential stages of task preparation in the human brain. Neuroimage 45, 606-613.

 

Bengtsson, S.L., Haynes, J.D., Sakai, K., Buckley, M.J. & Passingham, R.E. (2009). The representation of abstract task rules in the human prefrontal cortex. Cerebral Cortex 19, 1929 1936.

 

Soon, C.S., Brass, M., Heinze, H.J.& Haynes, J.D. (2008). Unconscious determinants of free decisions in the human brain. Nature Neuroscience 11, 543-5.

 

Sterzer, P., Haynes, J.D. & Rees, G. (2008). Fine-scale patterns in high-level visual areas encode the category of invisible objects. Journal of Vision 8, 1-12.

 

Eger, E., Ashburner, J., Haynes, J.D., Dolan, R.J., Rees, G. (2008). FMRI activity patterns in human LOC carry information about object exemplars within category. Journal of Cognitive Neuroscience 20, 356-70.

 

Wright, N.D., Mechelli, A., Noppeney, U., Veltman, D.J., Rombouts, S.A., Glensman, J., Haynes, J.D., Price, C.J. (2008). Selective activation around the left occipito-temporal sulcus for words relative to pictures: individual variability or false positives? Human Brain Mapping 29, 986-1000.

 

Sumner, P., Anderson, E.J., Sylvester, R., Haynes, J.D. & Rees, G. (2008). Combined orientation and colour information in human V1 for both L-M and S-cone chromatic axes. Neuroimage 15, 814-824.

 

Haynes, J.D., Sakai, K., Rees, G., Gilbert, S., Frith, C. & Passingham, D. (2007). Reading hidden intentions in the human brain. Current Biology 17, 323-328.

 

Weil, R.S., Kilner, J.M., Haynes, J.D. & Rees, G. (2007). Neural correlates of perceptual filling in of an artificial scotoma in humans. Proceedings of the National Academy of Sciences of the USA 104, 5211-5216.

 

Watkins, S., Shams, L., Haynes, J.D. & Rees, G. (2006). Sound-induced illusory flash perception modulates V1 activity. Neuroimage 31, 1247-1256.

 

Ruff, C., Blankenburg, F., Bjoertolmt, O., Bestmann, S., Freeman, E., Haynes, J.D., Rees, G., Josephs, O., Deichmann, R. & Driver, J. (2006). Remote influences of frontal and parietal areas on human retinotopic visual cortex revealed by concurrent TMS-fMRI. Current Biology 16, 1479-1488.

 

Sterzer, P., Haynes, J.D. & Rees, G. (2006) Primary visual cortex activation on the path of apparent motion is meridated by feedback from hMT+/V5. Neuroimage 32, 1308-1316.

 

Haynes, J.D., Deichmann, R. & Rees, G. (2005) Eye-specific suppression in human LGN reflects perceptual dominance during binocular rivalry. Nature 438, 496-499.

 

Haynes, J.D., Tregellas, J. & Rees, G. (2005). Attentional integration between anatomically distinct stimulus representations in early visual cortex. Proceedings of the National Academy of Sciences of the USA 102, 14925-14930.

 

Haynes, J.D. & Rees, G. (2005). Predicting the stream of consciousness from activity in early visual cortex. Current Biology 15, 1301-1307.

 

Bristow, D., Haynes JD, Sylvester, R., Frith, C. & Rees, G. (2005). Two distinct effects of blinking on human neural processing. Current Biology 15, 1296-1300.

 

Haynes, J.D. & Rees, G. (2005). Predicting the orientation of invisible stimuli from activity in human primary visual cortex. Nature Neuroscience 8, 686-691.

 

Haynes, J.D., Driver, J. & Rees, G. (2005). Visibility Reflects Dynamic Changes of Effective Connectivity between V1 and Fusiform Cortex. Neuron 46, 811-821.

 

Sylvester, R., Haynes, J.D. & Rees, G. (2005). Saccades differentially modulate human LGN and V1 responses in the presence and absence of visual stimulation. Current Biology 15, 37-41.

 

Haynes, J.D., Lotto, R.B. & Rees, G. (2004). Responses of human visual cortex to uniform surfaces. Proceedings of the National Academy of Sciences of the USA. 101, 4286-91.

 

Haynes, J.D., Roth, G., Stadler, M. & Heinze, H.J. (2003). Neuromagnetic correlates of perceived contrast in primary visual cortex. Journal of Neurophysiology 89, 2655-66.

 

Otterpohl, J.R., Haynes, J.D., Emmert-Streib, F., Vetter, G. & Pawelzik, K. (2000). Extracting the dynamics of perceptual switching from 'noisy' behaviour: an application of hidden Markov modelling to pecking data from pigeons. Journal of Physiology [Paris] 94, 555-67.

 

Vetter, G., Haynes, J.D. & Pfaff, S. (2000). Evidence for multistability in the visual perception of pigeons. Vision Research 40, 2177-86.

 


Preprints

Allefeld C, Soon CS, Bogler C, Heinzle J, Haynes JD. (2013). Sequential dependencies between trials in free choice tasks. ArXiv:1311.0753v1. November 4th 2013 (http://arxiv.org/abs/1311.0753).



 

Reviews, Editorials, Opinions (in Journals)

 

Kiefer M, Ansorge U, Haynes JD, Hamker F, Mattler U, Verleger R, Niedeggen M. Neuro-cognitive mechanisms of conscious and unconscious visual perception: From a plethora of phenomena to general principles. Adv Cogn Psychol. 2011;7:55-67. Epub 2011 Dec 1. PubMed PMID: 22253669; PubMed Central PMCID: PMC3259028.


Haynes, J.D. (2011). Decoding and predicting intentions. Annals of the New York Academy of Sciences 1224, 9-21.

 

Haynes, J.D. (2011). Multivariate decoding and brain reading: introduction to the special issue. Neuroimage. 56, 385-6.

 

Haynes, J.D. (2009). Decoding the contents of visual consciousness from human brain activity. Trends in Cognitive Sciences 13, 194-202.

 

Haynes, J.D. (2008). Detecting deception from neuroimaging signals--a data-driven perspective. Trends in Cognitive Sciences 12, 126-7.

 

Bles, M. & Haynes, J.D. (2008). Detecting concealed information using brain-imaging technology. Neurocase 14, 82-92.

 

Haynes, J.D. & Rees, G. (2006) Decoding mental states from brain activity in humans. Nature Reviews Neuroscience 7, 523-534.

 

Haken, H., Stadler, M., Ditzinger, T. & Haynes, J.D. (2005). Synergetics of perception and consciousness. Gestalt Theory 27, 8-28.

 

Haynes, J.D. & Rees, G. (2004). Causal or representational holism? Discussion of Alva Noë and Evan Thompson: “Are there neural correlates of consciousness?”. J Consciousness Studies 11, 42-45.

 

Herrmann, M. & Haynes, J.D. (2002). What’s behind a scoopy title? Expectation and dopamine release: Mechanism of the placebo effect in Parkinson’s disease. Research in Complementary and Classical Natural Medicine 9, 237-239.

 

Cleeremans, A. & Haynes, J. D. (1999). Correlating consciousness: A view from empirical science. International Review of Philosophy (Revue Internationale de Philosophie) 3/1999,    387-420.

 

Haynes, J. D. (1999). Freiheit, Indeterminismus oder Unprognostizierbarkeit? Comment on Mario von Cranach and Alex Ammann: Die Annahme der Willensfreiheit und ihre Konsequenzen für die Sozialwissenschaften. Ethik und Sozialwissenschaften 10, 289.

 

Haynes, J. D., Roth, G., Schwegler, H. & Stadler, M. (1999). Die funktionale Rolle des bewußt Erlebten. Gestalt Theory 20, 186-213.

 

Vetter, G., Stadler, M. & Haynes, J. D. (1997). Phase transitions in learning. Journal of Mind and Behavior 18, 335-350.