研究業績 Publications
論文 Original Article, Review
（プレプリント Preprint, not yet peer-reviewed）
Kayama-Watanabe, H., Nagai, Y., Sakai, S., Kobayashi, G., Yamamori, L., Tada, N., Kuwatani, T., Nishikawa, H., Horigome, T., Uehara, H., Yusa, Y. Heterogeneous shell growth of the neustonic goose barnacle Lepas anserifera: Its potential application for tracking floating materials. (Marine Biology, Under revision)
https://doi.org/10.21203/rs.3.rs-3819539/v1
（査読あり Peer-reviewed）
28. Kobayashi, G., Goto, R. Worms that repair: reconstruction of tubes is faster than normal growth in Spirobranchus akitsushima (Annelida: Serpulidae). Marine Biology Research (early view).
https://doi.org/10.1080/17451000.2024.2312903
27. Kobayashi, G. Buried treasure in a public repository: mining mitochondrial genes of 32 annelid species from sequence reads deposited in the Sequence Read Archive (SRA). PeerJ, 11, e16446, 2023.
(Open access) https://doi.org/10.7717/peerj.16446/
26. Kobayashi, G., Itoh, H., Nakajima, N. First report of the mitogenome of the invasive reef-building polychaete Ficopomatus enigmaticus (Annelida: Serpulidae) and a cryptic lineage from the Japanese Archipelago. Molecular Biology Reports, 50, 7183–7196, 2023.
https://doi.org/10.1007/s11033-023-08647-3
25. Kagawa, O., Hirota, S.K., Saito, T., Uchida, S., Watanabe, H., Miyazoe, R., Yamaguchi, T., Matsuno, T., Araki, K., Wakasugi, H., Suzuki, S., Kobayashi, G., Miyazaki, H., Suyama, Y., Hanyuda, T., Chiba, S. Host-shift speciation proceeded with gene flow in algae covering shells. The American Naturalist, 202(5), 721–732, 2023
https://www.journals.uchicago.edu/doi/epdf/10.1086/726221
24. Shinomiya, C., Kobayashi, G., Seike K., Yamashita, M., Yamamori, L., Sugiyama, T., Kawamura, M., Nishikawa, K., Goto, R. Molecular and morphological assessment of juvenile and adult forms in the giant worm Eunice cf. aphroditois (Annelida: Eunicidae) and its phylogenetic position in the family. Zoological Science, 40(4), 314–325, 2023.
https://doi.org/10.2108/zs220075
【表紙 Cover photo】
23. Kobayashi, G., Abe, H., Suzuki, M., Okoshi, K., Lin, H.J., Chen, T.Y., Sato-Okoshi, W. Populations of the intertidal crab Macrophthalmus banzai are not grouped by latitude: Taiwan population is genetically closer to the populations in the Japanese mainland than the Ryukyu Islands. Zoological Science, 40(4), 278–283, 2023.
https://doi.org/10.2108/zs220117
22. Kobayashi, G., Itoh, H., Nakajima, N. Molecular phylogeny of thoracotreme crabs including nine newly determined mitochondrial genomes. Zoological Science, 40(3), 224–234, 2023.
https://doi.org/10.2108/zs220063
【表紙 Cover photo】
21. Kobayashi, G., Itoh, H., Kanaya, G., Abe, H., Kojima, S. Genetically isolated population of the coastal species with high dispersal potential: the case of the sentinel crab Macrophthalmus japonicus (Brachyura: Macrophthalmidae) in Japan. Plankton and Benthos Research, 18, 13–20, 2023.
(Open access) https://doi.org/10.3800/pbr.18.13
20. Kobayashi, G., Itoh, H., Nakajima, N. First mitochondrial genome of a lugworm (Annelida: Arenicolidae) and its phylogenetic position. Journal of the Marine Biological Association of the United Kingdom, 102(8), 635–644, 2022.
https://doi.org/10.1017/S0025315422001035
19. 松政正俊，阿部博和，小林元樹，鈴木孝男．岩手県沿岸におけるヤマトオサガニ個体群の初記録．日本ベントス学会誌. 77, pp. 54–59, 2022.
[Matsumasa, M., Abe, H., Kobayashi, G., Suzuki, T. First record of Macrophthalmus japonicus (De Haan, 1835) (Brachyura: Macrophthalmidae) population from the Pacific coast of Iwate Prefecture, northern Japan. Japanese journal of benthology (in Japanese with English abstract)]
(Open access) https://doi.org/10.5179/benthos.77.54
18. Kobayashi, G., Itoh, H., Nakajima, N. First mitochondrial genomes of Capitellidae and Opheliidae (Annelida) and their phylogenetic placement. Mitochondrial DNA Part B, 7, 577-579, 2022.
(Open access) https://doi.org/10.1080/23802359.2022.2056537
17. Kobayashi, G., Itoh, H. & Kojima, S. Mitogenome of a stink worm (Annelida: Travisiidae) includes degenerate group II intron that is also found in five congeneric species. Scientific Reports 12: 4449, 2022.
(Open access) https://doi.org/10.1038/s41598-022-08103-5
16. Kobayashi, G., Sakamoto, T. New record of bioluminescence in Odontosyllis cf. australiensis (Annelida: Syllidae: Eusyllinae) in Japan. Journal of the Marine Biological Association of the United Kingdom, 101, pp. 919–925, 2021.
https://doi.org/10.1017/S0025315421000850
15. Kobayashi, G., Goto, R. Molecular phylogenetic assessment of Spirobranchus kraussii-complex (Annelida: Serpulidae) from the Japanese Archipelago. PeerJ, 9:e11746, 2021.
(Open access) https://doi.org/10.7717/peerj.11746
14. 小林元樹．環形動物門の高次系統に関する概説．Edaphologia（招待論文）, 109, pp. 9–17, 2021.
[Kobayashi, G. A brief review of annelid phylogeny. Edaphologia (in Japanese with English abstract) ]
(Open access) https://doi.org/10.20695/edaphologia.109.0_9
13. Kobayashi, G., Kojima, S. Travisia sanrikuensis, a new species of Travisiidae (Annelida) from the lower bathyal zone of the northwestern Pacific. Species Diversity, 26, pp. 131–136, 2021.
(Open access) https://doi.org/10.12782/specdiv.26.131
12. Kobayashi, G., Itoh, H., Fukuda, H., Kojima, S. The complete mitochondrial genome of the sand bubbler crab Scopimera globosa and its phylogenetic position. Genomics, 113(1), pp. 831–839, 2021.
https://doi.org/10.1016/j.ygeno.2020.10.014
11. Nakano, T., Kawamura, M., Kobayashi, G., Koizumi, K., Nakayama R., Sugiyama, T., Shimomura, M., Asakura, A. The intertidal macrobenthic fauna of the Hatakejima Experimental Field, Wakayama Prefecture, Japan, in 2019. Publications of Seto Marine Biological Laboratory, Kyoto University, 46, pp. 1–41, 2021.
(Open access) http://dx.doi.org/10.5134/262624
10. Kobayashi, G., Mukai, R., Itoh, H. New record of Halla okudai Imajima, 1967 (Annelida, Eunicida, Oenonidae) from Fukue Island in the Goto Islands, Japan. Check List, 16(5), pp. 1199–1203, 2020.
(Open access)
https://doi.org/10.15560/16.5.1199
9. Kobayashi, G. Small-scale population genetic structure of the sand bubbler crab Scopimera ryukyuensis in the Ryukyu Islands, Japan. Molecular Biology Reports, 47, pp. 2619–2626, 2020.
https://doi.org/10.1007/s11033-020-05350-5
8. Drennan, R., Wiklund, H., Rouse, G.W., Georgieva, M.N., Wu, X., Kobayashi, G., Yoshino, K. & Glover, A.G. Taxonomy and phylogeny of mud owls (Annelida: Sternaspidae), including a new synonymy and new records from the Southern Ocean, North East Atlantic Ocean and Pacific Ocean: challenges in morphological delimitation. Marine Biodiversity, 49, pp. 2659–2697, 2019.
(Open access)
https://doi.org/10.1007/s12526-019-00998-0
7. Kobayashi, G. & Araya, J. F. Southernmost records of Escarpia spicata and Lamellibrachia barhami (Annelida: Siboglinidae) confirmed with DNA obtained from dried tubes collected from undiscovered reducing environments in northern Chile. PLoS ONE, 13, e0204959, 2018.
(Open access)
https://doi.org/10.1371/journal.pone.0204959
6. Kobayashi, G., Goto, R., Takano, T. & Kojima, S. Molecular phylogeny of Maldanidae (Annelida): multiple losses of tube-capping plates and evolutionary shifts in habitat depth. Molecular Phylogenetics and Evolution, 127, pp. 332–344, 2018.
https://doi.org/10.1016/j.ympev.2018.04.036
5. Kobayashi, G., Mukai, R., Alalykina, I., Miura, T. & Kojima, S. Phylogeography of benthic invertebrates in deep waters: a case study of Sternaspis cf. williamsae (Annelida: Sternaspidae) from the northwestern Pacific Ocean. Deep-Sea Research Part II: Topical Studies in Oceanography, 154, 159–166, 2018.
https://doi.org/10.1016/j.dsr2.2017.12.016
4. Kobayashi, G. & Kojima, S. First record of Protomystides hatsushimaensis (Annelida: Phyllodocidae) inhabiting vacant tubes of vestimentiferan tubeworms. Marine Biodiversity Records, 10:25, 2017.
(Open access)
https://doi.org/10.1186/s41200-017-0127-9
3. Seike, K., Kobayashi, G. & Kogure, K. Post-depositional alteration of shallow-marine tsunami-induced sand layers: A comparison of recent and ancient tsunami deposits, Onagawa Bay, northeastern Japan. Island Arc, 26(2), e12174, 2017
(Open access) http://dx.doi.org/10.1111/iar.12174
>>One of the journal’s top 20 most downloaded recent papers in 2017<<
2. Kobayashi, G., Miura, T. & Kojima, S. Lamellibrachia sagami sp. nov., a new vestimentiferan tubeworm (Annelida: Siboglinidae) from Sagami Bay and several sites in the northwestern Pacific Ocean. Zootaxa, 4018(1), 97–108, 2015.
(Open access) http://dx.doi.org/10.11646/zootaxa.4018.1.5
→McCowin et al. 2019 は L. columna のシノニムにしています (2019/6/21)
1. Abe, H., Kobayashi, G. & Sato-Okoshi, W. Impacts of the 2011 tsunami on the subtidal polychaete assemblage and the following recolonization in Onagawa Bay, northeastern Japan. Marine Environmental Research, 112, 86–95, 2015.
http://dx.doi.org/10.1016/j.marenvres.2015.09.011
（査読なし Not peer-reviewed, in Japanese）
9. 小林元樹，大越和加，小島茂明． 深海性多毛類の深度分布および遺伝的多様性．タクサ，56, pp. 19–23, 2024（招待論文、カバーイラスト Invited, cover illustration）．
[Kobayashi, G., Sato-Okoshi, W., Kojima, S. Bathymetric distribution and genetic diversity of deep-sea polychaetes. Taxa, Proceedings of the Japanese Society of Systematic Zoology (invited)]
(Open access) https://doi.org/10.19004/taxa.56.0_19
8. 阿部博和，小林元樹，小田中健流，太田尚志，後藤龍太郎，美濃川拓哉，鷲尾正彦，阿部広和，福森啓晶．スジホシムシモドキ共生性二枚貝スジホシムシモドキヤドリガイの宮城県と青森県における記録．石巻専修大学 研究紀要，34, 109–114, 2023.
[Abe, H., Kobayashi, G., Odanaka, T., Ota, T., Goto, R., Minokawa, T., Washio, M., Abe, H., Fukumori, H. Records of the galeommatoid bivalve Nipponomysella subtruncata (Yokoyama, 1927), a commensal with the sipunculan Siphonosoma cumanense (Keferstein, 1867) from Miyagi and Aomori Prefectures, Japan. Bulletin of Ishinomaki Senshu University (in Japanese with English abstract)]
(Open access) https://www.senshu-u.ac.jp/ishinomaki/library/search/kiyou/
7. 小林元樹，菅孔太朗，阿部博和．屋久島におけるタケフシゴカイ科２種の報告．みちのくベントス，6, pp. 58–63, 2022.
[Kobayashi, G., Kan, K., Abe, H. Record of two species of Maldanidae from Yakushima Island, Japan. Michinoku Benthos (in Japanese)]
6. 太田瑞希 ，小林元樹，阿部博和，伊藤萌 ，冨岡森理，小島茂明 ．利尻島沿岸の等脚目甲殻類(節足動物門) ．利尻研究，39, pp. 47–54, 2020.
[Ohta, M., Kobayashi, G., Abe, H., Itoh, H., Tomioka, S., Kojima, S. Coastal Isopods (Arthropoda: Crustacea: Isopoda) around Rishiri Island. Rishiri Studies (in Japanese with English abstract)]
(Open access) http://riishiri.sakura.ne.jp/Sites/RS/archive/392020/3911.pdf
5. 小林元樹，阿部博和，冨岡森理，伊藤萌，小島茂明．利尻島の海産環形動物．利尻研究，38, pp. 29–41, 2019.
[Kobayashi, G., Abe, H., Tomioka, S., Ito, H., Kojima, S. Marine Annelids of Rishiri Island, Northern Japan. Rishiri Studies (in Japanese with English abstract)]
(Open access) http://riishiri.sakura.ne.jp/Sites/RS/archive/382019/3804.pdf
4. 阿部博和，冨岡森理，小林元樹，伊藤萌．利尻島沿岸のスピオ科多毛類相（環形動物門）．利尻研究，38, pp. 15–27, 2019.
[Abe, H., Tomioka, S., Kobayashi, G., Ito, H. Spionidae (Annelida) from Rishiri Island, northern Japan. Rishiri Studies (in Japanese with English abstract)]
(Open access) http://riishiri.sakura.ne.jp/Sites/RS/archive/382019/3803.pdf
3. 小林元樹，阿部博和，伊藤萌，冨岡森理，小島茂明．タマシキゴカイ科環形動物２種の利尻島初記録と日本における本科の過去の記録について．利尻研究，37, pp. 95–100, 2018.
[Kobayashi, G., Abe, H., Ito, H., Tomioka, S., Kojima, S. New records of two arenicolid species (Annelida: Arenicolidae) from Rishiri Island, northern Japan with a brief review of previous records of Japanese arenicolids. Rishiri Studies (in Japanese with English abstract)]
(Open access) http://riishiri.sakura.ne.jp/Sites/RS/download/372018.html
2. 小林元樹，三浦知之，小島茂明．環形動物の興味深い仲間：ハオリムシ類．号外海洋，海洋出版株式会社, 57, pp. 46–51, 2016.[Kobayashi, G., Miura, T., Kojima, S. Interesting member of annelids: vestimentiferan tubeworms. Kaiyo extra (in Japanese)]
1. 阿部博和，近藤智彦，小林元樹，大越和加．河口域，干潟，湾内の海洋環境とマクロベントス群集の変化−蒲生干潟と女川湾を例として−. 月刊海洋, 海洋出版株式会社, 46, pp. 48–55, 2014.
[Abe, H., Kondoh, T., Kobayashi, G., Sato-Okoshi, W. Environmental and macrobenthic faunal changes occurred in river mouth, tidal flat and bay after the 2011 tsunami – Examples of Gamo Lagoon and Onagawa Bay. Kaiyo monthly (in Japanese)]
著書 Book/Book Chapter
2. 小林元樹．海産環形動物の系統学的研究．pp. 86–95. 京都大学フィールド科学教育研究センター瀬戸臨海実験所創立100周年記念出版編集委員会（編）．海産無脊椎動物多様性学 100年の歴史とフロンティア，706 pp.
・小林（2021）で紹介した後に提案された環形動物の分類体系について簡単に解説しました。Rouse et al. (2022) が提案した多毛綱に対するコメントも記述しました。
https://www.kyoto-up.or.jp/books/9784814004492.html?lang=en
1. Abe, H., Kobayashi, G. & Sato-Okoshi, W. Ecological impacts of earthquake and tsunami and the following succession on the subtidal macrobenthic community in Onagawa Bay, northeastern Japan, with special reference to the dominant taxon, polychaetes. In: Urabe, J. & Nakashizuka, T. (Eds) Ecological impacts of tsunamis on coastal ecosystems: Lessons from the Great East Japan Earthquake. Springer, Tokyo, pp. 59–84, 2016.
https://doi.org/10.1007/978-4-431-56448-5_6
活動報告など Reports (in Japanese)
9. 小林元樹．海産環形動物の多様性．うみうし通信，122, pp. 9–11, 2024.（招待原稿）
8. 山守瑠奈，邉見由美，小林元樹．2022年度日本ベントス学会若手の会 開催報告．日本ベントス学会誌，77, pp. 73–74, 2022.
https://www.jstage.jst.go.jp/article/benthos/77/0/77_73/_article/-char/ja/
7. 阿部博和，菅孔太朗，小林元樹．屋久島の多毛類の多様性．屋久島通信, 82, pp. 4–5, 2022.
https://www.researchgate.net/publication/365853642_wujiudaonoduomaoleinoduoyangxing
6. 小川晟人，自見 直人，蛭田眞平，小林元樹，清家弘治，野牧秀隆．白鳳丸世界一周KH-19-6航海での南半球ベントス採集記．日本ベントス学会誌, 75, pp. 65–70, 2020.
https://doi.org/10.5179/benthos.75.65
5. 小林元樹．瀬戸臨海実験所: 紀伊半島の高い生物多様性を研究に活かす．日本進化学会ニュース, 21(2), pp. 5–8, 2020b.
http://sesj.kenkyuukai.jp/special/?id=1450
4. 小林元樹，杉山 高大，阿部 博和，中村 真悠子，自見 直人，後藤 龍太郎，2019年日本ベントス学会・日本プランクトン学会合同大会自由集会2「環形動物の多様性と進化」開催報告．日本ベントス学会誌, 74(2), pp. 136–139, 2020.
https://doi.org/10.5179/benthos.74.136
3. 小林元樹．13th International Polychaete Conference 参加報告．日本ベントス学会誌, 74(2), pp. 123, 2020a. https://doi.org/10.5179/benthos.74.123
2. 小林元樹．研究航海レポート（白鳳丸航海 KH-18-4）．東京大学大気海洋研究所ニュースレター Ocean Breeze, 30, pp. 8, 2019
https://www.aori.u-tokyo.ac.jp/newsletter/files/ocean_breeze030.pdf
1. 伊勢戸徹，岡西政典，生野賢司，瀬尾絵理子，堀越彩香，照屋清之介，林亮太，福森啓晶，小林元樹，自見直人，山崎剛史，菊地波輝，田中颯，東亮一，鈴木隆仁，神保宇嗣．「若手分類学者の集い」の10年. タクサ, 47, pp. 30–38, 2019. https://www.jstage.jst.go.jp/article/taxa/47/0/47_30/_article/-char/ja
取材協力等
利尻島の水産だより118号「 北の海の語り 釣り餌の定番「ゴカイ類」の多様性とくらし」 p. 5, 2021年3月