presentation slides:
ChIP-seq design
ChIP-seq analysis
data:
UCSC genome browser session with RNA Pol II ChIP in different stages
modENCODE chromatin data sets
modENCODE transcription factor data sets
ChIP-seq analysis tools:
Link to Abcam Workshop for Analysis of ChIP-seq data
Bowtie mapping reads
MACS peak finding
Galaxy web based analysis
UCSC genome browser
MEME ChIP motif finding
Web logo motif visualization
R bioconductor